These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_10319#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 615 fasta sequence [GCCGTTTCCCTCTCTCTCCCGCCTCTTCTCCACCACCCCCTCC-TCCTCAGGTGATTCCAGCATGGTGGTGGTCGGATCGGCG-GAGTCCTTCACCAGCATCATGTCCAAGGTGG-AAGCGGAGAAGCTTCCGGCCGTGTTCTACTACACGGCGGTATGGTGCGGGCCTTGTAGAGCGATGGCACCCGTGATTTCAAAACTGAGCAGCCGGTACCCCAAGATACCTATCTACAAAGTTGACATTGACATGGATGGTGTTGGAAGCAAACTAAGTGATCTAAAAATATTCTCTGTGCCAACATTCCATTTCTACTACCAAGGTCGGAAG-CAGGTGAGGTNGTTNGGTGCTAATGCGACAAAACTTGAATCAACCATGGAAAGTCTTNAACAAGCACCTATAGGAAGGTTTTGTNGGAGAATATGACCCGGAGGTGGCCAGATGTCTCCATGTGCCTTCCATCAACGTGTTTGACATTGATATTTCTGAACCTTCTGGTTGTTTTTTATCATGCTGAATTCAGTACATTGCACCTCTTGTTTATTTAGCACAACTTTGTATAGTCTGCATGTCTAATATCAGAATCAACGCAAACATTCTGTTGGGAAAAAAAAAAAAAA] [+] EMBL C27892 [GCCGTTTCCCTCTCTCTCCCGCCTCTTCTCCACCACCCCCTCC TCCTCAGGTGATTCCAGCATGGTGGTGGTCGGATCGGCG GAGTCCTTCACCAGCATCATGTCCAAGGTGG AAGCGGAGAAGCTTCCGGCCGTGTTCTACTACACGGCGGTATGGTGCGGGCCTTGTAGAGCGATGGCACCCGTGATTTCAAAACTGAGCAGCCGGTACCCCAAGATACCTATCTACAAAGTTGACATTGACATGGATGGTGTTGGAAGCAAACTAAGTGATCTAAAAATATTCTCTGTGCCAACATTCCATTTCTACTACCAAGGTCGGAAG CAGGTGAGGTNGTTNGGTGCTAATGCGACAAAACTTGAATCAACCATGGAAAGTCTTNAACAAGCACCTATAGGAAGGTTTTGTNGGAGAATATGACCCGGAGGTGGCCAGATGT ] [+] EMBL AU100897 [ CCCTTCCTTCCTCAGGTGATTCCAGCATGGTGGTGGTCGGATCGGCGNAAGTCCTTCACCAGCATCATGTCCAAGGTGGAAAGCGGAGAAGCTTCCGGCCGTGTTCTACTACACGGCGGTATGGTGCGGGCCTTGTAGAGCGATGGCACCCGTGATTTCAAAACTGAGCAGCCGGTACCCCAAGATACCTATCTACAAAGTTGACATTGACATGGATGGTGTTGGAAGCAAACTAAGTGATCTAAAAATATTCTCTGTGCCAACATTCCATTTCTACTACCAAGGTCGGAAGACAGGTGAGGTGGTT GGTGCTAATGCGACAAAACTTGAATCAACCATGGAAAGTCTT CACAAGCAACTATA GAA GTTTTGTGGAAGAATATGACCGGGAGGTGGCCAGATGTCTCCATGTGCCTTCCATCAACGTGTTTGACATTGATATTTCTGAACCTTCTGGTTGTTTTTTATCATGCTGAATTCAGTACATTGCACCTCTTGTTTATTTAGCACAACTTTGTATAGTCTGCATGTCTAATATCAGAATCAACGCAAACATTCTGTTGGGAAAAAAAAAAAAAA] consensusID : consensus_10319#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 505 fasta sequence [CCCTNGCCGCCGCCGCCGCCGCCTCCAAACCCTACCTNCCCGGAAAACCTAGCCCCGCGCCTCCTCCTCCCCTCTCCTCCCCGCCGCCGTTTCCCTCTCTCTGCCGCCTCTTCTNCACCACCCNCTNCTCCTNAGGTGATTCCAGCATGGTGGTGGTCGGATCGGCGGAGTCCTTNACCAGCATCATGTCCAAGGTGGAAGCGGAGAAGCTTNCGGCCGTGTTCTACTACACGGCGGTATGGTGCGGGCCTTGTAGAGCGATNGGCACCNGTGATTTNAAAACTNAGTAGTNGGTANCNNAAGATACCTATCTACAAAGTTGACATTGACATGGATGGTGTTGGAAGCAAACTAAGTGATCTAAAAATATTCTCTGTGGTAAGTTGCATTGTACTATGACTATAGCTCATGACTGTGTGCCTAAATTTCTGCGCAGCTTCCTCCAGTTATCTAGATCTCTTTTTCTTTGTTGCCAACATGTTTTGCTCTTGTAGCCAACATTCCA] [+] EMBL OS1378A [CCCTNGCCGCCGCCGCCGCCGCCTCCAAACCCTACCTNCCCGGAAAACCTAGCCCCGCGCCTCCTCCTCCCCTCTCCTCCCCGCCGCCGTTTCCCTCTCTCTGCCGCCTCTTCTNCACCACCCNCTNCTCCTNAGGTGATTCCAGCATGGTGGTGGTCGGATCGGCGGAGTCCTTNACCAGCATCATGTCCAAGGTGGAAGCGGAGAAGCTTNCGGCCGTGTTCTACTACACGGCGGTATGGTGCGGGCCTTGTAGAGCGATNGGCACCNGTGATTTNAAAACTNAGTAGTNGGTANCNNAAGATACCTAT ] [+] EMBL CF322494 [ CGCCTCCTCCTCCCCTCTCCTCCCCGCCGCCGTTTCCCTCTCTCTCCCGCCTCTTCTCCACCACCCCCTCCTCCTCAGGTGATTCCAGCATGGTGGTGGTCGGATCGGCGGAGTCCTTCACCAGCATCATGTCCAAGGTGGAAGCGGAGAAGCTTCCGGCCGTGTTCTACTACACGGCGGTATGGTGCGGGCCTTGTAGAGCGAT GGCACCCGTGATTTCAAAACTGAGCAGCCGGTACCCCAAGATACCTATCTACAAAGTTGACATTGACATGGATGGTGTTGGAAGCAAACTAAGTGATCTAAAAATATTCTCTGTGGTAAGTTGCATTGTACTATGACTATAGCTCATGACTGTGTGCCTAAATTTCTGCGCAGCTTCCTCCAGTTATCTAGATCTCTTTTTCTTTGTTGCCAACATGTTTTGCTCTTGTAGCCAACATTCCA] consensusID : consensus_10319#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 405 fasta sequence [GGGATGCNCGTTTGNGNNNTGGNGCNTCNACTGTGNNCGNGTNCNTAAGACTCCNCTTCCTCGCCGCCGCCGCCGCCGCCTCCAAACCCTANNTCCCCCGAAAACCTAGACCCGCGCCTCCTCCTCCCCTCTCCTCCCCGNCGNCGTTTCCCTCTCTCTCCCGCCTCTTCTCCACCACNCCCTCCTCCTCNGGTGATTCCAGCNTGGTGGTGGTCGGATTGGCGGAGTCCTTCACCAGCATCATGTCCAAGGTGGAAGCGGAGAAGCTTCCGGCCGTGTTCTACTACACNGNGGTATGGTGCGGGGCTTGTAGANCGATGGCNCCCGTGNATATTCTATATATATATCTTTGGATTTCAGCCGGTNCCCCNNGATACCTATCTCCNAGTTGACNTTGACCTGGAT] [+] EMBL AA754509 [GGGATGCNCGTTTGNGNNNTGGNGCNTCNACTGTGNNCGNGTNCNTAAGACTCCNCTTCCTCGCCGCCGCCGCCGCCGCCTCCAAACCCTANNTCCCCCGAAAACCTAGACCCGCGCCTCCTCCTCCCCTCTCCTCCCCGNCGNCGTTTCCCTCTCTCTCCCGCCTCTTCTCCACCACNCCCTCCTCCTCNGGTGATTCCAGCNTGGTGGTGGTCGGATTGGCGGAGTCCTTCACCAGCATCATGTCCAAGGTGGAAGCGGAGAAGCTTCCGGCCGTGTTCTACTACACNGNGGTATGGTGCGGGGCTTGTAGANCGATGGCNCCCGTGNATATTCTATATATATATCTTTGGATTTCAGCCGGTNCCCCNNGATACCTATCTCCNAGTTGACNTTGACCTGGAT] consensusID : consensus_10319#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 374 fasta sequence [GACACTGACATGGACTGAGGAGTAGAATGTTTTTTATCATGCTGAATTCAGTACATTGCACCTCTTGTTTATTTAGCACAACTTTGTATAGTCTGCATGTCTAATATCAGAATCAACGCAAACATTCTGTTGGGATGCAGCAACCCACTAATTTTGTTGGGATAGACGTGAAGGAATTCTGGGCCTGTCAGTCCATCCATTGTTTTTCTGGGCCTTTGTCATAGTTCAACCATTCCAGTGTTGGGCTACAAGTCCCCCAGAATTTTTTCTCGCCATCGGCACAAGTTAATCATGAACCTACGATGTTTGGCGTCTCGAAAGTGAAAAAAAATAAATTAAATGCTTGAGTTTCACCTGAAAAAAAAAACAAAAAA] [+] EMBL CF320942 [GACACTGACATGGACTGAGGAGTAGAATGTTTTTTATCATGCTGAATTCAGTACATTGCACCTCTTGTTTATTTAGCACAACTTTGTATAGTCTGCATGTCTAATATCAGAATCAACGCAAACATTCTGTTGGGATGCAGCAACCCACTAATTTTGTTGGGATAGACGTGAAGGAATTCTGGGCCTGTCAGTCCATCCATTGTTTTTCTGGGCCTTTGTCATAGTTCAACCATTCCAGTGTTGGGCTACAAGTCCCCCAGAATTTTTTCTCGCCATCGGCACAAGTTAATCATGAACCTACGATGTTTGGCGTCTCGAAAGTGAAAAAAAATAAATTAAATGCTTGAGTTTCACCTGAAAAAAAAAACAAAAA ] [-] EMBL CF320941 [ ATGGACTGAGGAGTAGAATGTTTTTTATCATGCTGAATTCAGTACATTGCACCTCTTGTTTATTTAGCACAACTTTGTATAGTCTGCATGTCTAATATCAGAATCAACGCAAACATTCTGTTGGGATGCAGCAACCCACTAATTTTGTTGGGATAGACGTGAAGGAATTCTGGGCCTGTCAGTCCATCCATTGTTTTTCTGGGCCTTTGTCATAGTTCAACCATTCCAGTGTTGGGCTACAAGTCCCCCAGAATTTTTTCTCGCCATCGGCACAAGTTAATCATGAACCTACGATGTTTGGCGTCTCGAAAGTGAAAAAAAATAAATTAAATGCTTGAGTTTCACCTGAAAAAAAAAACAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_10319#1 ---------------------------------------------------------CCC 3 consensus_10319#2 GGGATGCNCGTTTGNGNNNTGGNGCNTCNACTGTGNNCGNGTNCNTAAGACTCCNCTTCC 60 consensus_10319#0 ------------------------------------------------------------ consensus_10319#3 ------------------------------------------------------------ consensus_10319#1 TNGCCGCCGCCGCCGCCGCCTCCAAACCCTACCTNCCCGGAAAACCTAGCCCCGCGCCTC 63 consensus_10319#2 TCGCCGCCGCCGCCGCCGCCTCCAAACCCTANNTCCCCCGAAAACCTAGACCCGCGCCTC 120 consensus_10319#0 ------------------------------------------------------------ consensus_10319#3 ------------------------------------GACACTGACATGGACTGAGGAGTA 24 consensus_10319#1 CTCCTCCCCTCTCCTCCCCGCCGCCGTTTCCCTCTCTCTGCCGCCTCTTCTNCACCACCC 123 consensus_10319#2 CTCCTCCCCTCTCCTCCCCGNCGNCGTTTCCCTCTCTCTCCCGCCTCTTCTCCACCACNC 180 consensus_10319#0 ----------------------GCCGTTTCCCTCTCTCTCCCGCCTCTTCTCCACCACCC 38 consensus_10319#3 GAATGTTTTTTATCATGCTGAATTCAGTACATTGCACCTCTTGTTTATTTAGCACAACTT 84 * * * * ** * * ** *** ** consensus_10319#1 NCT----NCTCCTNAGGTGATTCCAGCATGGTGGTGGTCGGATCGGCGGAGTCCTTNA-- 177 consensus_10319#2 CCT----CCTCCTCNGGTGATTCCAGCNTGGTGGTGGTCGGATTGGCGGAGTCCTTCA-- 234 consensus_10319#0 CCT----CCTCCTCAGGTGATTCCAGCATGGTGGTGGTCGGATCGGCGGAGTCCTTCA-- 92 consensus_10319#3 TGTATAGTCTGCATGTCTAATATCAGAATCAACGCAAACATTCTGTTGGGATGCAGCAAC 144 * ** * * ** *** * * * * ** * * * consensus_10319#1 CCAGCATCATGTCCAAGGTGGAAGCGGAGAAGCTTNCGGCCGTGTTCTACTACACGGCGG 237 consensus_10319#2 CCAGCATCATGTCCAAGGTGGAAGCGGAGAAGCTTCCGGCCGTGTTCTACTACACNGNGG 294 consensus_10319#0 CCAGCATCATGTCCAAGGTGGAAGCGGAGAAGCTTCCGGCCGTGTTCTACTACACGGCGG 152 consensus_10319#3 CCACTAATTTTGTTGGGATAGACGTGAAGGAATTCTGGGCC-TGTCAGTCCATCCATTGT 203 *** * * * * ** * * ** * * **** *** * * * * consensus_10319#1 TATGGTGCGGGCCTTGTAGAGCGATNGGCACCNGTGA---TTTNAAAACTNAGT------ 288 consensus_10319#2 TATGGTGCGGGGCTTGTAGANCGATGG-CNCCCGTGNATATTCTATATATATATCTTTGG 353 consensus_10319#0 TATGGTGCGGGCCTTGTAGAGCGATGG-CACCCGTGA---TTTCAAAACTGAGC------ 202 consensus_10319#3 TTTTCTG-GGCCTTTGTCATAGTTCAACCATTCCAGT---GTTGGGCTACAAGTC----- 254 * * ** ** **** * * * consensus_10319#1 -----AGTNGGTANCNNAAGATACCTATCTACA-AAGTTGACATTGACATGGATGGTGTT 342 consensus_10319#2 ATTTCAGCCGGTNCCCCNNGATACCTATCTCCN-A-GTTGACNTTGACCTGGAT------ 405 consensus_10319#0 -----AGCCGGTACCCCAAGATACCTATCTACA-AAGTTGACATTGACATGGATGGTGTT 256 consensus_10319#3 -----CCCCAGAATTTTTTCTCGCC-ATCGGCACAAGTTAATCATGA-ACCTACGATGTT 307 * ** *** * * *** * *** * consensus_10319#1 GGAAGCAAACTAAGTGATCTAAAAATATTCTCTGTGGTAAGTTGCATTGTACTATGACTA 402 consensus_10319#2 ------------------------------------------------------------ consensus_10319#0 GGAAGCAAACTAAGTGATCTAAAAATATTCTCTGTGCCAACATTCCATTT-CTACTACCA 315 consensus_10319#3 TGGCGTCTCGAAAGTGAAA-AAAAATAAATTAAATGCTTGAGTTTCACCT--GAAAAAAA 364 consensus_10319#1 TAGCTCATGACTGTGTGCCTAAATTTCTGCGCAGCTTCCTCCAGTTATCTAGATCTCTTT 462 consensus_10319#2 ------------------------------------------------------------ consensus_10319#0 AGGTCGGAAGCAGGTGAGGTNGTTNGGTGCTAATGCGACAAAACTTGAATCAACCATGGA 375 consensus_10319#3 AAACAAAAAA-------------------------------------------------- 374 consensus_10319#1 TTCTTTGTTGCCAACATGTTTTGCTCTTGTAGCCAACATTCCA----------------- 505 consensus_10319#2 ------------------------------------------------------------ consensus_10319#0 AAGTCTTNAACAAGCACCTATAGGAAGGTTTTGTNGGAGAATATGACCCGGAGGTGGCCA 435 consensus_10319#3 ------------------------------------------------------------ consensus_10319#1 ------------------------------------------------------------ consensus_10319#2 ------------------------------------------------------------ consensus_10319#0 GATGTCTCCATGTGCCTTCCATCAACGTGTTTGACATTGATATTTCTGAACCTTCTGGTT 495 consensus_10319#3 ------------------------------------------------------------ consensus_10319#1 ------------------------------------------------------------ consensus_10319#2 ------------------------------------------------------------ consensus_10319#0 GTTTTTTATCATGCTGAATTCAGTACATTGCACCTCTTGTTTATTTAGCACAACTTTGTA 555 consensus_10319#3 ------------------------------------------------------------ consensus_10319#1 ------------------------------------------------------------ consensus_10319#2 ------------------------------------------------------------ consensus_10319#0 TAGTCTGCATGTCTAATATCAGAATCAACGCAAACATTCTGTTGGGAAAAAAAAAAAAAA 615 consensus_10319#3 ------------------------------------------------------------ |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||