These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_1034#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 480 fasta sequence [TATTGTTATACATGATACTTATTATGTTGTTGCTCATTTTCATTATGCTTTAAGAATAGGTGCGGTTTTTAGATTATTGGCTGGGTTTTTTTATTGATTCCCTTTATTTACTGGGGTGTGTATAAATTCTAAGTATTTGTTAGTTCAGTTTTTGATTTTGTTTGTTGGTGTAAATATAACATTTTTTCCACAACATTTCTTAGGTTTAGCTGGAATACCTCGTCGTTATTCTGATTATGCTGATAGAATGTTATTTTGAAATATTATTTCTTCAATAGGAGCTTTTATTTCTTTTTTTGGGACAGGTATAATTATTTTTATTATTTGAGAAGCGCTTGTAGGAAAACGTTCTGTAGTATCTGTGTTAATTGGGTATTGAGATGTTGAGTGGAGGGATGAGTATCCCTTAAGATTCCATGCTTCCAATGAGACTGCTTAAGTTTATTTGGNNACAAACCAAAAGGGCAAACCAGATGGGGG] [+] EMBL CA758804 [TATTGTTATACATGATACTTATTATGTTGTTGCTCATTTTCATTATGCTTTAAGAATAGGTGCGGTTTTTAGATTATTGGCTGGGTTTTTTTATTGATTCCCTTTATTTACTGGGGTGTGTATAAATTCTAAGTATTTGTTAGTTCAGTTTTTGATTTTGTTTGTTGGTGTAAATATAACATTTTTTCCACAACATTTCTTAGGTTTAGCTGGAATACCTCGTCGTTATTCTGATTATGCTGATAGAATGTTATTTTGAAATATTATTTCTTCAATAGGAGCTTTTATTTCTTTTTTTGGGACAGGTATAATTATTTTTATTATTTGAGAAGCGCTTGTAGGAAAACGTTCTGTAGTATCTGTGTTAATTGGGTATTGAGATGTTGAGTGGAGGGATGAGTATCCCTTAAGATTCCATGCTTCCAATGAGACTGCTTAAGTTTATTTGGNNACAAACCAAAAGGGCAAACCAGATGGGGG] consensusID : consensus_1034#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 304 fasta sequence [TCCACAACATTTCTTAGGTTTAGCTGGAATACCTCGTCGTTATTCTGATTATGCTGATAGAATGTTATTTTGAAATATTATTTCTTCAATAGGAGCTTTTATTTCTTTTTTTGGGACAGTTATAATTATTTTTATTATTTGAGAAGCGTTTGTAGTAAAACGTTCTGTAGTATCTGTGTTAATTGGTTATTGAGATGTTGAGTGAAGGTATGAGTATCCGTTAAGATTCCATGCTTCTAATGAGACTGCTAAAGTTTATTTGTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA] [+] EMBL CA754771 [TCCACAACATTTCTTAGGTTTAGCTGGAATACCTCGTCGTTATTCTGATTATGCTGATAGAATGTTATTTTGAAATATTATTTCTTCAATAGGAGCTTTTATTTCTTTTTTTGGGACAGTTATAATTATTTTTATTATTTGAGAAGCGTTTGTAGTAAAACGTTCTGTAGTATCTGTGTTAATTGGTTATTGAGATGTTGAGTGAAGGTATGAGTATCCGTTAAGATTCCATGCTTCTAATGAGACTGCTAAAGTTTATTTGTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_1034#0 TATTGTTATACATGATACTTATTATGTTGTTGCTCATTTTCATTATGCTTTAAGAATAGG 60 consensus_1034#1 ------------------------------------------------------------ consensus_1034#0 TGCGGTTTTTAGATTATTGGCTGGGTTTTTTTATTGATTCCCTTTATTTACTGGGGTGTG 120 consensus_1034#1 ------------------------------------------------------------ consensus_1034#0 TATAAATTCTAAGTATTTGTTAGTTCAGTTTTTGATTTTGTTTGTTGGTGTAAATATAAC 180 consensus_1034#1 ------------------------------------------------------------ consensus_1034#0 ATTTTTTCCACAACATTTCTTAGGTTTAGCTGGAATACCTCGTCGTTATTCTGATTATGC 240 consensus_1034#1 ------TCCACAACATTTCTTAGGTTTAGCTGGAATACCTCGTCGTTATTCTGATTATGC 54 ****************************************************** consensus_1034#0 TGATAGAATGTTATTTTGAAATATTATTTCTTCAATAGGAGCTTTTATTTCTTTTTTTGG 300 consensus_1034#1 TGATAGAATGTTATTTTGAAATATTATTTCTTCAATAGGAGCTTTTATTTCTTTTTTTGG 114 ************************************************************ consensus_1034#0 GACAGGTATAATTATTTTTATTATTTGAGAAGCGCTTGTAGGAAAACGTTCTGTAGTATC 360 consensus_1034#1 GACAGTTATAATTATTTTTATTATTTGAGAAGCGTTTGTAGTAAAACGTTCTGTAGTATC 174 ***** **************************** ****** ****************** consensus_1034#0 TGTGTTAATTGGGTATTGAGATGTTGAGTGGAGGGATGAGTATCCCTTAAGATTCCATGC 420 consensus_1034#1 TGTGTTAATTGGTTATTGAGATGTTGAGTGAAGGTATGAGTATCCGTTAAGATTCCATGC 234 ************ ***************** *** ********** ************** consensus_1034#0 TTCCAATGAGACTGCTTAAGTTTATTTGGNNACAAACCAAAAGGGCAAACCAGATGGGGG 480 consensus_1034#1 TTCTAATGAGACTGCTAAAGTTTATTTGTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 294 *** ************ *********** * *** **** *** * * consensus_1034#0 ---------- consensus_1034#1 AAAAAAAAAA 304 |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||