These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_10342#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1126 fasta sequence [CACAGCCATCGTCTCTCTCGAGCCGTCGCTGAAGCCAAAAAACCGAGCGAGCTGCGCTACTAGGCAATACACGCAGTTTCCGGCGATGTCGGCGGCGGCGGCGGCTACTGATGGGACGTACTCTCCGGCGGCGGCCGCGGGGGAAAAGCGGAGGGAGAGGAAGGAGGAGCTGCGGCGCCACCTCGCCGAGGACGCCGACTGGCCCCGCGCCGACGGCCGCTCCTTCCACGACTGCCGTCCCGCATTTATGCAAACAGGACCAACAACTGCCGCATCAGGATCTGCTTATGCAGAATTTGGGAAGACAAAGGTCATTGTGTCAGTGTTTGGACCAAGAGAAAGCAAGAAAGCAATGTTGTACAGTGATACCGGTAGACTCAATTGCAATGTGAGCTACACAACATTTGCCACCCCTATACGTGGACAGGGAATGGACAACAAGGAGTACTCCGCAATGCTCCATAAAGCCCTGGAAGGCGCAGTGATGCTACACACTTTTCCAAAAACCACTGTTGATGTCTTTGCGTTGGTTCTTGAGTCTGGTGGCAGTGATCTTCCCATCATTATTTCTTGTGCTAGTCTTGCGTTGGCTGATGCCGGAATCATGATATATGACCTTGTTACATCGGTATCTGTGTCCTGTTTCGGGAAGAACATTATCATCGATCCAACCTCTGACGAGGAAGCATGGCAAGACGGCAGCATTATGGTGGCGTACATGCCAGCCCGCAAGGAGATCACTCAGCTAACACTTACTGGAGAGTGGTCTGATGGCAAAATCACCAATGCGGTAGAGCTCTGCATGGATGCTTGTAGTAAGCTCTGTGACATACTACGGGAGCGCTTGAAAGATGCTGCCAGCTTGGCTGAGTGAATAATTGCTTTAGCAGCGAGATGTCCAAGACTTAAAACATATCCTTAGCTGTACAAATTTTGTAGGCAAGGGAGGAGGCTAAGGCCTGATGTTTGCGAGATTACATGATTATGCTGATTGTTTACTTCATGGCAAAGCAGCTAATTGTTCTGAGAGAAAGTAGCATGGTTTGTATATTGTTTTGTACTCCTGACCTTCAGACTTGTAAACATTGGGATGATGCATTGACGCGGCACTCCTGTCGTTATTCGT] [+] EMBL CF329059 [CACAGCCATCGTCTCTCTCGAGCCGTCGCTGAAGCCAAAAAACCGAGCGAGCTGCGCTACTAGGCAATACACGCAGTTTCCGGCGATGTCGGCGGCGGCGGCGGCTACTGATGGGACGTACTCTCCGGCGGCGGCCGCGGGGGAAAAGCGGAGGGAGAGGAAGGAGGAGCTGCGGCGCCACCTCGCCGAGGACGCCGACTGGCCCCGCGCCGACGGCCGCTCCTTCCACGACTGCCGTCCCGCATTTATGCAAACAGGACCAACAACTGCCGCATCAGGATCTGCTTATGCAGA ] [+] EMBL AK063695 [ AGCGAGCTGCGCTACTAGGCAATACACGCAGTTTCCGGCGATGTCGGCGGCGGCGGCGGCTACTGATGGGACGTACTCTCCGGCGGCGGCCGCGGGGGAAAAGCGGAGGGAGAGGAAGGAGGAGCTGCGGCGCCACCTCGCCGAGGACGCCGACTGGCCCCGCGCCGACGGCCGCTCCTTCCACGACTGCCGTCCCGCATTTATGCAAACAGGACCAACAACTGCCGCATCAGGATCTGCTTATGCAGAATTTGGGAAGACAAAGGTCATTGTGTCAGTGTTTGGACCAAGAGAAAGCAAGAAAGCAATGTTGTACAGTGATACCGGTAGACTCAATTGCAATGTGAGCTACACAACATTTGCCACCCCTATACGTGGACAGGGAATGGACAACAAGGAGTACTCCGCAATGCTCCATAAAGCCCTGGAAGGCGCAGTGATGCTACACACTTTTCCAAAAACCACTGTTGATGTCTTTGCGTTGGTTCTTGAGTCTGGTGGCAGTGATCTTCCCATCATTATTTCTTGTGCTAGTCTTGCGTTGGCTGATGCCGGAATCATGATATATGACCTTGTTACATCGGTATCTGTGTCCTGTTTCGGGAAGAACATTATCATCGATCCAACCTCTGACGAGGAAGCATGGCAAGACGGCAGCATTATGGTGGCGTACATGCCAGCCCGCAAGGAGATCACTCAGCTAACACTTACTGGAGAGTGGTCTGATGGCAAAATCACCAATGCGGTAGAGCTCTGCATGGATGCTTGTAGTAAGCTCTGTGACATACTACGGGAGCGCTTGAAAGATGCTGCCAGCTTGGCTGAGTGAATAATTGCTTTAGCAGCGAGATGTCCAAGACTTAAAACATATCCTTAGCTGTACAAATTTTGTAGGCAAGGGAGGAGGCTAAGGCCTGATGTTTGCGAGATTACATGATTATGCTGATTGTTTACTTCATGGCAAAGCAGCTAATTGTTCTGAGAGAAAGTAGCATGGTTTGTATATTGTTTTGTACTCCTGACCTTCAGACTTGTAAACATTGGGATGATGCATTGACGCGGCACTCCTGTCGTTATTCGT] [+] EMBL CF322956 [ CAACATTTGCCACTCCTATACGTGGGCAGGGAACAGATAACAAGGAGTACTCCGCAATGCTTCATAAAGCTCTGGAAGGCGCAGTGATGTTGCACACTTTTCCAAAGACCACTGTTGATGTTTTTGCCTTGGTTCTTGAGTCTGGTGGCAGTGATCTTCCCATCATTATTTCTTGTGCTAGTCTTGCGTTGGCTGATGCTGGAATCATGATGTATGACCTTGTTACATCAGTATCTGTGTCCTGTTTTGGGAAGAACATAATCATTGATCCAACCTCTGACGAGGAAGCATGGCAAGACGGCAGCCTTATGGTGGCGTACATGCCAGCCCGCAAAGAGATCACGCAGCTAACTCTTACTGGAGAGTGGTCTGATGGCAAAATCACGAACGCGGTGGAGCTCTGCATGGATGCCTGCAGTAAGCTCTGTGACATACTTCGGGAGCGCTTGAAAGATGCTTCCAGCTTGGCTGAG ] consensusID : consensus_10342#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 635 fasta sequence [CTTTGCGTTGGTTCTTGAGTCTGGTGGCAGTGATCTTCCCCATCATTATTTCTTGTGCTAGTCTTGCGTTGGCTGATGCCGGAATCATGATATATGACCTTGTTACATCGGTATCTGTGTCCTGTTTCGGGAAGAACATTATCATCGATCCAACCTCTGACGAGGAAGCATGGCAAGACGGCAGCATTATGGTGGCGTACATGCCAGCCCGCAAGGAGATCACTCAGCTAACACTTACTGGAGAGTGGTCTGATGGCAAAATCACCAATGCGGTAGAGCTCTGCATGGATGCTTGTAGTAAGCTCTGTGACATACTACGGGAGCGCTTGAAAGATGCTGCCAGCTGGGCTGAGTGAATAATTGCTTTAGCAGCGAGATGTCCAAGACTTAAAGCATATCCTTAGCTGTACAAATTTTGTAGGCAAGGGAGGAGGCTAAGGCCTGATGTTTGCGAGATTACATGATTATGCTGATTGTTTACTTCATGGCAAAGCAGCTAATTGTTCTGAGAGAAAGTAGCATGGTTTGTATATTGTTTTGCACTCCTGACCTTCAGACTTGTAAACATTGGGATGATGCATTGACGCGGCAAAAAAAAAAAAAAAAAAAAAGAACACTGTCATGCCGTTCGTAGC] [-] EMBL CF329060 [CTTTGCGTTGGTTCTTGAGTCTGGTGGCAGTGATCTTCCCCATCATTATTTCTTGTGCTAGTCTTGCGTTGGCTGATGCCGGAATCATGATATATGACCTTGTTACATCGGTATCTGTGTCCTGTTTCGGGAAGAACATTATCATCGATCCAACCTCTGACGAGGAAGCATGGCAAGACGGCAGCATTATGGTGGCGTACATGCCAGCCCGCAAGGAGATCACTCAGCTAACACTTACTGGAGAGTGGTCTGATGGCAAAATCACCAATGCGGTAGAGCTCTGCATGGATGCTTGTAGTAAGCTCTGTGACATACTACGGGAGCGCTTGAAAGATGCTGCCAGCTGGGCTGAGTGAATAATTGCTTTAGCAGCGAGATGTCCAAGACTTAAAGCATATCCTTAGCTGTACAAATTTTGTAGGCAAGGGAGGAGGCTAAGGCCTGATGTTTGCGAGATTACATGATTATGCTGATTGTTTACTTCATGGCAAAGCAGCTAATTGTTCTGAGAGAAAGTAGCATGGTTTGTATATTGTTTTGCACTCCTGACCTTCAGACTTGTAAACATTGGGATGATGCATTGACGCGGCAAAAAAAAAAAAAAAAAAAAAGAACACTGTCATGCCGTTCGTAGC] consensusID : consensus_10342#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 398 fasta sequence [CAAGGAGATCACGCAGCTAACTCTTACTGGAGAGTGGTCTGATGGCAAAATCACGAACGCGGTGGAGCTCTGCATGGATGCCTGCAGTAAGCTCTGTGACATACTTCGGGAGCACTTGAAAGATGCTTCCAGCTTGGCTGAGTGAATAAAGTTTTAGCAGCAGGATGTTGCAAGCTCAAACAGATATCCTTAGCTGTACAAATTTTGTAGGCAAGGGAGGCTGATGCCTGATGTTTGCGGGACTACATGATTATATGCTGATTGTTTCCTTTGCAAAACAGCTAATTGTTCAGAGAGAAAGTAGCATTGTCTGTATGTTGTTTTGTACTACTCCTGATTGTAATACTTTATAGATGAAGCCATAAAAGAATGCAAAATTAGCTTAAAAAAAAAAAAAA] [+] EMBL BE607457 [CAAGGAGATCACGCAGCTAACTCTTACTGGAGAGTGGTCTGATGGCAAAATCACGAACGCGGTGGAGCTCTGCATGGATGCCTGCAGTAAGCTCTGTGACATACTTCGGGAGCACTTGAAAGATGCTTCCAGCTTGGCTGAGTGAATAAAGTTTTAGCAGCAGGATGTTGCAAGCTCAAACAGATATCCTTAGCTGTACAAATTTTGTAGGCAAGGGAGGCTGATGCCTGATGTTTGCGGGACTACATGATTATATGCTGATTGTTTCCTTTGCAAAACAGCTAATTGTTCAGAGAGAAAGTAGCATTGTCTGTATGTTGTTTTGTACTACTCCTGATGGTAATACTTTATAGATGAAGCCATAAAAGAATGCAAAATTA ] [+] EMBL CF331619 [ gagtAGAAATTGAAAGATGCTTCCAGCTTGGCTGAGTGAATAAAGTTTTAGCAGCAGGATGTTGCAAGCTCAAACAGATATCCTTAGCTGTACAAATTTTGTAGGCAAGGGAGGCTGATGCCTGATGTTTGCGGGACTACATGATTATATGCTGATTGTTTCCTTTGCAAAACAGCTAATTGTTCAGATAGAAAGTAGCATTGTCTGTATGTTGTTTTGTACTACTCCTGATTGTAATACTTTATAGATGAAGCCATAAAAGAATGCAAAATTAGCTTAAAAAAAAAAAAA ] [-] EMBL CF331618 [ GCTTCCAGCTTGGCTGAGTGAATAAAGTTTTAGCAGCAGGATGTTGCAAGCTCAAACAGATATCCTTAGCTGTACAAATTTTGTAGGCAAGGGAGGCTGATGCCTGATGTTTGCGGGACTACATGATTATATGCTGATTGTTTCCTTTGCAAAACAGCTAATTGTTCAGAGAGAAAGTAGCATTGTCTGTATGTTGTTTTGTACTACTCCTGATTGTAATACTTTATAGATGAAGCCATAAAAGAATGCAAAATTAGCTTAAAAAAAAAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_10342#0 CACAGCCATCGTCTCTCTCGAGCCGTCGCTGAAGCCAAAAAACCGAGCGAGCTGCGCTAC 60 consensus_10342#1 ------------------------------------------------------------ consensus_10342#2 ------------------------------------------------------------ consensus_10342#0 TAGGCAATACACGCAGTTTCCGGCGATGTCGGCGGCGGCGGCGGCTACTGATGGGACGTA 120 consensus_10342#1 ------------------------------------------------------------ consensus_10342#2 ------------------------------------------------------------ consensus_10342#0 CTCTCCGGCGGCGGCCGCGGGGGAAAAGCGGAGGGAGAGGAAGGAGGAGCTGCGGCGCCA 180 consensus_10342#1 ------------------------------------------------------------ consensus_10342#2 ------------------------------------------------------------ consensus_10342#0 CCTCGCCGAGGACGCCGACTGGCCCCGCGCCGACGGCCGCTCCTTCCACGACTGCCGTCC 240 consensus_10342#1 ------------------------------------------------------------ consensus_10342#2 ------------------------------------------------------------ consensus_10342#0 CGCATTTATGCAAACAGGACCAACAACTGCCGCATCAGGATCTGCTTATGCAGAATTTGG 300 consensus_10342#1 ------------------------------------------------------------ consensus_10342#2 ------------------------------------------------------------ consensus_10342#0 GAAGACAAAGGTCATTGTGTCAGTGTTTGGACCAAGAGAAAGCAAGAAAGCAATGTTGTA 360 consensus_10342#1 ------------------------------------------------------------ consensus_10342#2 ------------------------------------------------------------ consensus_10342#0 CAGTGATACCGGTAGACTCAATTGCAATGTGAGCTACACAACATTTGCCACCCCTATACG 420 consensus_10342#1 ------------------------------------------------------------ consensus_10342#2 ------------------------------------------------------------ consensus_10342#0 TGGACAGGGAATGGACAACAAGGAGTACTCCGCAATGCTCCATAAAGCCCTGGAAGGCGC 480 consensus_10342#1 ------------------------------------------------------------ consensus_10342#2 ------------------------------------------------------------ consensus_10342#0 AGTGATGCTACACACTTTTCCAAAAACCACTGTTGATGTCTTTGCGTTGGTTCTTGAGTC 540 consensus_10342#1 ---------------------------------------CTTTGCGTTGGTTCTTGAGTC 21 consensus_10342#2 ------------------------------------------------------------ consensus_10342#0 TGGTGGCAGTGATCTTCCC-ATCATTATTTCTTGTGCTAGTCTTGCGTTGGCTGATGCCG 599 consensus_10342#1 TGGTGGCAGTGATCTTCCCCATCATTATTTCTTGTGCTAGTCTTGCGTTGGCTGATGCCG 81 consensus_10342#2 ------------------------------------------------------------ consensus_10342#0 GAATCATGATATATGACCTTGTTACATCGGTATCTGTGTCCTGTTTCGGGAAGAACATTA 659 consensus_10342#1 GAATCATGATATATGACCTTGTTACATCGGTATCTGTGTCCTGTTTCGGGAAGAACATTA 141 consensus_10342#2 ------------------------------------------------------------ consensus_10342#0 TCATCGATCCAACCTCTGACGAGGAAGCATGGCAAGACGGCAGCATTATGGTGGCGTACA 719 consensus_10342#1 TCATCGATCCAACCTCTGACGAGGAAGCATGGCAAGACGGCAGCATTATGGTGGCGTACA 201 consensus_10342#2 ------------------------------------------------------------ consensus_10342#0 TGCCAGCCCGCAAGGAGATCACTCAGCTAACACTTACTGGAGAGTGGTCTGATGGCAAAA 779 consensus_10342#1 TGCCAGCCCGCAAGGAGATCACTCAGCTAACACTTACTGGAGAGTGGTCTGATGGCAAAA 261 consensus_10342#2 ----------CAAGGAGATCACGCAGCTAACTCTTACTGGAGAGTGGTCTGATGGCAAAA 50 ************ ******** **************************** consensus_10342#0 TCACCAATGCGGTAGAGCTCTGCATGGATGCTTGTAGTAAGCTCTGTGACATACTACGGG 839 consensus_10342#1 TCACCAATGCGGTAGAGCTCTGCATGGATGCTTGTAGTAAGCTCTGTGACATACTACGGG 321 consensus_10342#2 TCACGAACGCGGTGGAGCTCTGCATGGATGCCTGCAGTAAGCTCTGTGACATACTTCGGG 110 **** ** ***** ***************** ** ******************** **** consensus_10342#0 AGCGCTTGAAAGATGCTGCCAGCTTGGCTGAGTGAATAATTGCTTTAGCAGCGAGATGTC 899 consensus_10342#1 AGCGCTTGAAAGATGCTGCCAGCTGGGCTGAGTGAATAATTGCTTTAGCAGCGAGATGTC 381 consensus_10342#2 AGCACTTGAAAGATGCTTCCAGCTTGGCTGAGTGAATAAA-GTTTTAGCAGCAGGATGTT 169 *** ************* ****** ************** * ********* ***** consensus_10342#0 CAAGACTTAAA-ACATATCCTTAGCTGTACAAATTTTGTAGGCAAGGGAGGAGGCTAAGG 958 consensus_10342#1 CAAGACTTAAA-GCATATCCTTAGCTGTACAAATTTTGTAGGCAAGGGAGGAGGCTAAGG 440 consensus_10342#2 GCAAGCTCAAACAGATATCCTTAGCTGTACAAATTTTGTAGGCAAGGGAGG---CTGATG 226 * ** *** ************************************* ** * * consensus_10342#0 CCTGATGTTTGCGAGATTACATGATTAT--GCTGATTGTTTACTTCATGGCAAAGCAGCT 1016 consensus_10342#1 CCTGATGTTTGCGAGATTACATGATTAT--GCTGATTGTTTACTTCATGGCAAAGCAGCT 498 consensus_10342#2 CCTGATGTTTGCGGGACTACATGATTATATGCTGATTGTTTCCTTT---GCAAAACAGCT 283 ************* ** *********** *********** *** ***** ***** consensus_10342#0 AATTGTTCTGAGAGAAAGTAGCATGGTTTGTATATTGTTTTGTACT---CCTGACCTTCA 1073 consensus_10342#1 AATTGTTCTGAGAGAAAGTAGCATGGTTTGTATATTGTTTTGCACT---CCTGACCTTCA 555 consensus_10342#2 AATTGTTCAGAGAGAAAGTAGCATTGTCTGTATGTTGTTTTGTACTACTCCTGATTGTAA 343 ******** *************** ** ***** ******** *** ***** * * consensus_10342#0 GACTTGTAAACATTGGGATGATGCATTGACGCGGCACTCCTGTCGTTATTCGT------- 1126 consensus_10342#1 GACTTGTAAACATTGGGATGATGCATTGACGCGGCAAAAAAAAAAAAAAAAAAAAAGAAC 615 consensus_10342#2 TACTT-TATAGAT-GAAGCCATAAAAGAATGCAAAATTAGCTTAAAAAAAAAAAAAA--- 398 **** ** * ** * ** * * ** * * consensus_10342#0 -------------------- consensus_10342#1 ACTGTCATGCCGTTCGTAGC 635 consensus_10342#2 -------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||