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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_10348#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 6 consensus length = 1188 fasta sequence
[TCTCGCCCAAATCCATCCAGCCCGTCGCCGCCCGCCGCCCGCCGCGCGCGCGCGCACCCGAGCTCCCGCTCCCTCCCCTCCGATGGCGGCGGCGGCGCGCTCCCTCGCGCTGCTCTCGACCGCCTCCGCGTCCCTCGGCCTCGGCGTCGCGCGCTCCTCCGCCCGCCCTCGGTCCCCGTTTGGGCGGGGCCTCGCCCTCCGCGGCCTGTCGTCGTCCTCGTCCTCCTTCGCCGCCACCGCCGCGGTGATGGGGAAGGCCGGCACCGCGGAAGCCGCCGACGCCGGGATGGACGCCGTCCAGCAGCGGCTCATGTTCGAGGACGAGTGTATTTTAGTGGACGAACAGGACAACGTCATTGGCCATGATTCCAAGTATAACTGCCATCTCATGGAAAAGATAAATTCTGGTCATGTCCTCCACAGAGCGTTCAGTGTTTTTCTTTTCAACTCCAAATATGAATTGTTACTTCAGCAAAGGTCTGCTACAAAAGTGACATTTCCACTTGTCTGGACAAACACTTGCTGTAGCCACCCTCTATACCGCGAGTCCGAGCTCATTGAAGATAAAAGCCTAGGGGTCAGAAATGCAGCA-CA-GCGGAAGCTATTCGATGAACTGGGAATACA-AGCTGAAGAACTACCTGTTGACCAATTCATTCCTCTTGGGAGGATGCTTTACAAGGCTCCATCT-GATGGAAAATGGGGCGAACA-TGAACTGGACTACCTCCTATTCATGGTTCGTGATGTGGAGCTCAGCCCGAATCCTGAAGAAGTGGCCGACGTCAAGTACGTGAATCGTGATGAGCTGAAGGAGTTGCTCAAGAAGGCAGATGCTGGTGAAGGCGGCATTAAGCTGTCCCCTTGGTTTAGGCTGGTTGTTGACAACTTCCTCATGAGATGGTGGGATCATGTTGAGCAAGGGACTCTGGAGGAGGCCATCGACATGAAAACAATTCATAAGTTGTAGAGTATAAATCGTTGGGCAACGTCCTTAGAAAATAAAGAATTGTTGCTTTAACCTTTTCACGGAAATAATCCAGAAAGAAATACATGTTCTTATGCAGGTTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACCTTTTTTTCCCCTTTCTTAAGAAGGGGGAAATTTTTT]
[+] EMBL AK060336 [TCTCGCCCAAATCCATCCAGCCCGTCGCCGCCCGCCGCCCGCCGCGCGCGCGCGCACCCGAGCTCCCGCTCCCTCCCCTCCGATGGCGGCGGCGGCGCGCTCCCTCGCGCTGCTCTCGACCGCCTCCGCGTCCCTCGGCCTCGGCGTCGCGCGCTCCTCCGCCCGCCCTCGGTCCCCGTTTGGGCGGGGCCTCGCCCTCCGCGGCCTGTCGTCGTCCTCGTCCTCCTTCGCCGCCACCGCCGCGGTGATGGGGAAGGCCGGCACCGCGGAAGCCGCCGACGCCGGGATGGACGCCGTCCAGCAGCGGCTCATGTTCGAGGACGAGTGTATTTTAGTGGACGAACAGGACAACGTCATTGGCCATGATTCCAAGTATAACTGCCATCTCATGGAAAAGATAAATTCTGGTCATGTCCTCCACAGAGCGTTCAGTGTTTTTCTTTTCAACTCCAAATATGAATTGTTACTTCAGCAAAGGTCTGCTACAAAAGTGACATTTCCACTTGTCTGGACAAACACTTGCTGTAGCCACCCTCTATACCGCGAGTCCGAGCTCATTGAAGATAAAAGCCTAGGGGTCAGAAATGCAGCA CA GCGGAAGCTATTCGATGAACTGGGAATACA AGCTGAAGAACTACCTGTTGACCAATTCATTCCTCTTGGGAGGATGCTTTACAAGGCTCCATCT GATGGAAAATGGGGCGAACA TGAACTGGACTACCTCCTATTCATGGTTCGTGATGTGGAGCTCAGCCCGAATCCTGAAGAAGTGGCCGACGTCAAGTACGTGAATCGTGATGAGCTGAAGGAGTTGCTCAAGAAGGCAGATGCTGGTGAAGGCGGCATTAAGCTGTCCCCTTGGTTTAGGCTGGTTGTTGACAACTTCCTCATGAGATGGTGGGATCATGTTGAGCAAGGGACTCTGGAGGAGGCCATCGACATGAAAACAATTCATAAGTTGTAGAGTATAAATCGTTGGGCAACGTCCTTAGAAAATAAAGAATTGTTGCTTTAACCTTTTCACGGAAATAATCCAGAAAGAAATACATGTTCTTATGCAGGT ]
[+] EMBL AK099027 [ GCGCGCGCGCACCCGAGCTCCCGCTCCCTCCCCTCCGATGGCGGCGGCGGCGCGCTCCCTCGCGCTGCTCTCGACCGCCTCCGCGTCCCTCGGCCTCGGCGTCGCGCGCTCCTCCGCCCGCCCTCGGTCCCCGTTTGGGCGGGGCCTCGCCCTCCGCGGCCTGTCGTCGTCCTCGTCCTCCTTCGCCGCCACCGCCGCGGTGATGGGGAAGGCCGGCACCGCGGAAGCCGCCGACGCCGGGATGGACGCCGTCCAGCAGCGGCTCATGTTCGAGGACGAGTGTATTTTAGTGGACGAACAGGACAACGTCATTGGCCATGATTCCAAGTATAACTGCCATCTCATGGAAAAGATAAATTCTGGTCATGTCCTCCACAGAGCGTTCAGTGTTTTTCTTTTCAACTCCAAATATGAATTGTTACTTCAGCAAAGGTCTGCTACAAAAGTGACATTTCCACTTGTCTGGACAAACACTTGCTGTAGCCACCCTCTATACCGCGAGTCCGAGCTCATTGAAGATAAAAGCCTAGGGGTCAGAAATGCAGCA CA GCGGAAGCTATTCGATGAACTGGGAATACA AGCTGAAGAACTACCTGTTGACCAATTCATTCCTCTTGGGAGGATGCTTTACAAGGCTCCATCT GATGGAAAATGGGGCGAACA TGAACTGGACTACCTCCTATTCATGGTTCGTGATGTGGAGCTCAGCCCGAATCCTGAAGAAGTGGCCGACGTCAAGTACGTGAATCGTGATGAGCTGAAGGAGTTGCTCAAGAAGGCAGATGCTGGTGAAGGCGGCATTAAGCTGTCCCCTTGGTTTAGGCTGGTTGTTGACAACTTCCTCATGAGATGGTGGGATCATGTTGAGCAAGGGACTCTGGAGGAGGCCATCGACATGAAAACAATTCATAAGTTGTAGAGTATAAATCGTTGGGCAACGTCCTTAGAAAATAAAGAATTGTTGCTTTAA ]
[+] EMBL CF196392 [ ATTGGCCATGATTCCAAGTATAACTGCCATCTCATGGAAAAGATAAATTCTGGTCATGTCCTCCACAGAGCGTTCAGTGTTTTTCTTTTCAACTCCAAATATGAATTGTTACTTCAGCAAAGGTCTGCTACAAAAGTGACATTTCCACTTGTCTGGACAAACACTTGCTGTAGCCACCCTCTATACCGTGAGTCCGAGCTCATTGAAGATAAAAGCCTAGGGGTCAGAAATGCAGCA CA GCGGAAGCTATTCGATGAACTGGGAATACA AGCTGAAGAACTACCTGTTGACCAATTCATTCCTCTTGGGAGGATGNNNNNNNNNGCTCCATCTNNNNNGAANNNGGGGNGAACA TGAACTGGACTACCTCCT ]
[+] EMBL OSC12682A [ TTNCTGTAGCCACCCTCTATACCNNNAGTNCGAGCTCATTGAAGATAAAANCCTAGGGGTCAGAAATNCAGCA CA GCGGAAGCTATTCGATGAACTGGGAATACA AGCTGAAGAACTACCTGTTGACCAATTCATTCCTCTTGGGAGGATGCTTTACAAGGCTCCATCT GATGGAAAATGGGGCGAACA TGAACTGGACTACCTCCTNTTCATGGTTCGTGATGTGGAGCTCAGCCCGANTCCTGAAGAAGTGGCCGANGTCAAGTAAGTGAATCGT ]
[+] EMBL BM418943 [ tcTTGAAGATAAAACCNTAGGGNTCAGAAATCCAGCACCACNCGGAAGCTATTCGATGAACTGGGAATACACAGCTGAAGAACTACCTGTTGACCCATTCATTCCTCTTGGGAGGATGCTTTACAAGGCTCCATCT GATGGAAAATGGGGCGAACACTGAACTGGACTACCTCCTATTCATGGTTCGTGATGTGGAGCTCAGCCCGAATCCTGAAGAAGTGGCCGACGTCAAGTACGTGAATCGTGATGAGCTGAAGGAGTTGCTCAAGAA GCAGATGCTGGTGAAGGCGNCATTAAGCTGTCCCCTTGGTTTAGGCTGGTTGTTGACAACTTCCTCATGGGATGGTGGGATCATGTTGAGCCAGGGACTCTGGAGGAGCCCATCGACATGAAAACCATTCATAAGTTGTAGAGTATAAATC TTGGCCAACG CCTTAGAAAATAAAGAATT TTCCTTTAACCTTTTCACGGAAATAATCC GAAAGAAATACATGTTCTTATCCAGTTTAAAAAA ]
[+] EMBL CF299408 [ GCAGATGCTGGTGAAGGCGGCATTAAGCTGTCCCCTTGGTTTAGGCTGGTTGTTGACAACTTCCTCATGAGATGGTGGGATCATGTTGAGCAAGGGACTCTGGAGGAGGCCATCGACATGAAAACAATTCATAAGTTGTAGAGTATAAATCGTTGGGCAACGTCCTTAGAAAATAAAGAATTGTTGCTTTAACCTTTTCACGGAAATAATCCAGAAAGAAATACATGTTCTTATGCNAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACCTTTTTTTCCCCTTTCTTAAGAAGGGGGAAATTTTTT]
consensusID : consensus_10348#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 664 fasta sequence
[CGGACAAACACTTGCTGTAGCCCACCCTCTAATACCGCGAGTCCGAGCTCCATTGAAGATAAAACCCTAGGGGTCAGAAATNCAGCACAGCGGAAGCTATTCGATGAACTGGGAATNCAAGCTGAAGAACTACCTGTTGACCAATTCATTCCTCTTGGGAGGATGCTTTACCAAGGCTCCATCTGATGGAAAATGGGGCGAACATGAACTGGACTACCTCCTATTCATGGGTCCGTGATGTGGAGCTCAGCCCGAATCCTGAAGAANTGNCCGACGTCAAGTACGTGAATCGTGATGAGCTGAAGGAGTTGCTCAAGAAGGCAGATGCTGGTGAAGGCGGCATTAAGCTGTCCCCTTGGTTTAGGCTGGTTGTTGACAACTTCCTCATGAGATGGTGGGATCATGTTGAGCAAGGGACTCTGGAGGAGGCCATCGACATGAAAACAATTCATAAGTTGTAGAGTATAAATCGTTGGGCAACGTCCTTAGAAAATAAAGAATTGTTGCTTTAACCTTTTCACGGAAATAATCCAGAAAGAAATACATGTTCTTATGCAGGTTTTATGAGGTAGAAGCAAAAACTTACCGGAATCATGCTCTGCCAGGAGCTTATAAGTTTTCTATTGGAGTTGGATTGGAGTAATGTTCAGGCGAAAAAAAAAAA]
[+] EMBL C98233 [CGGACAAACACTTGCTGTAGCCCACCCTCTAATACCGCGAGTCCGAGCTCCATTGAAGATAAAACCCTAGGGGTCAGAAATNCAGCACAGCGGAAGCTATTCGATGAACTGGGAATNCAAGCTGAAGAACTACCTGTTGACCAATTCATTCCTCTTGGGAGGATGCTTTACCAAGGCTCCATCTGATGGAAAATGGGGCGAACATGAACTGGACTACCTCCTATTCATGGGTCCGTGATGTGGAGCTCAGCCCGAATCCTGAAGAANTGNCCGACGTCAAGTACGTGAATCGTGATGAGCTGAAGGAGTTGCTCAAGAAGGCAGATGCTGGTGAAGGCGGCATTAAGCTGTCCCCTTGGTTTAGGCTGGTTGTTGACAACTTCCTCATGAGATGGTGGGATCATGTTGAGCAAGGGACTCTGGAGGAGGCCATCGACATGAAAACAATTCATAAGTTGTAGAGTATAAATCGTTGGGCAACGTCCTTAGAAAATAAAGAATTGTTGCTTTAACCTTTTCACGGAAATAATCCAGAAAGAAATACATGTTCTTATGCAGGTTTTATGAGGTAGAAGCAAAAACTTACCGGAATCATGCTCTGCCAGGAGCTTATAAGTTTTCTATTGGAGTTGGATTGGAGTAATGTTCAGGCGAAAAAAAAAAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_10348#0 TCTCGCCCAAATCCATCCAGCCCGTCGCCGCCCGCCGCCCGCCGCGCGCGCGCGCACCCG 60
consensus_10348#1 ------------------------------------------------------------
consensus_10348#0 AGCTCCCGCTCCCTCCCCTCCGATGGCGGCGGCGGCGCGCTCCCTCGCGCTGCTCTCGAC 120
consensus_10348#1 ------------------------------------------------------------
consensus_10348#0 CGCCTCCGCGTCCCTCGGCCTCGGCGTCGCGCGCTCCTCCGCCCGCCCTCGGTCCCCGTT 180
consensus_10348#1 ------------------------------------------------------------
consensus_10348#0 TGGGCGGGGCCTCGCCCTCCGCGGCCTGTCGTCGTCCTCGTCCTCCTTCGCCGCCACCGC 240
consensus_10348#1 ------------------------------------------------------------
consensus_10348#0 CGCGGTGATGGGGAAGGCCGGCACCGCGGAAGCCGCCGACGCCGGGATGGACGCCGTCCA 300
consensus_10348#1 ------------------------------------------------------------
consensus_10348#0 GCAGCGGCTCATGTTCGAGGACGAGTGTATTTTAGTGGACGAACAGGACAACGTCATTGG 360
consensus_10348#1 ------------------------------------------------------------
consensus_10348#0 CCATGATTCCAAGTATAACTGCCATCTCATGGAAAAGATAAATTCTGGTCATGTCCTCCA 420
consensus_10348#1 ------------------------------------------------------------
consensus_10348#0 CAGAGCGTTCAGTGTTTTTCTTTTCAACTCCAAATATGAATTGTTACTTCAGCAAAGGTC 480
consensus_10348#1 ------------------------------------------------------------
consensus_10348#0 TGCTACAAAAGTGACATTTCCACTTGTCTGGACAAACACTTGCTGTAGCC-ACCCTCTA- 538
consensus_10348#1 ----------------------------CGGACAAACACTTGCTGTAGCCCACCCTCTAA 32
********************* ********
consensus_10348#0 TACCGCGAGTCCGAGCTC-ATTGAAGATAAAAGCCTAGGGGTCAGAAATGCAGCACAGCG 597
consensus_10348#1 TACCGCGAGTCCGAGCTCCATTGAAGATAAAACCCTAGGGGTCAGAAATNCAGCACAGCG 92
****************** ************* **************** **********
consensus_10348#0 GAAGCTATTCGATGAACTGGGAATACAAGCTGAAGAACTACCTGTTGACCAATTCATTCC 657
consensus_10348#1 GAAGCTATTCGATGAACTGGGAATNCAAGCTGAAGAACTACCTGTTGACCAATTCATTCC 152
************************ ***********************************
consensus_10348#0 TCTTGGGAGGATGCTTTAC-AAGGCTCCATCTGATGGAAAATGGGGCGAACATGAACTGG 716
consensus_10348#1 TCTTGGGAGGATGCTTTACCAAGGCTCCATCTGATGGAAAATGGGGCGAACATGAACTGG 212
******************* ****************************************
consensus_10348#0 ACTACCTCCTATTCATGG-TTCGTGATGTGGAGCTCAGCCCGAATCCTGAAGAAGTGGCC 775
consensus_10348#1 ACTACCTCCTATTCATGGGTCCGTGATGTGGAGCTCAGCCCGAATCCTGAAGAANTGNCC 272
****************** * ********************************* ** **
consensus_10348#0 GACGTCAAGTACGTGAATCGTGATGAGCTGAAGGAGTTGCTCAAGAAGGCAGATGCTGGT 835
consensus_10348#1 GACGTCAAGTACGTGAATCGTGATGAGCTGAAGGAGTTGCTCAAGAAGGCAGATGCTGGT 332
************************************************************
consensus_10348#0 GAAGGCGGCATTAAGCTGTCCCCTTGGTTTAGGCTGGTTGTTGACAACTTCCTCATGAGA 895
consensus_10348#1 GAAGGCGGCATTAAGCTGTCCCCTTGGTTTAGGCTGGTTGTTGACAACTTCCTCATGAGA 392
************************************************************
consensus_10348#0 TGGTGGGATCATGTTGAGCAAGGGACTCTGGAGGAGGCCATCGACATGAAAACAATTCAT 955
consensus_10348#1 TGGTGGGATCATGTTGAGCAAGGGACTCTGGAGGAGGCCATCGACATGAAAACAATTCAT 452
************************************************************
consensus_10348#0 AAGTTGTAGAGTATAAATCGTTGGGCAACGTCCTTAGAAAATAAAGAATTGTTGCTTTAA 1015
consensus_10348#1 AAGTTGTAGAGTATAAATCGTTGGGCAACGTCCTTAGAAAATAAAGAATTGTTGCTTTAA 512
************************************************************
consensus_10348#0 CCTTTTCACGGAAATAATCCAGAAAGAAATACATGTTCTTATGCAGGTTAAAAAAAAAAA 1075
consensus_10348#1 CCTTTTCACGGAAATAATCCAGAAAGAAATACATGTTCTTATGCAGGTTTTATGAGGTAG 572
************************************************* * * *
consensus_10348#0 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 1135
consensus_10348#1 AAGCAAAAACTTACCGGAATCATGCTCTGCCAGGAGCTTATAAGTTTTCTATTGGAGTTG 632
** ***** * ** * * * * ** * *
consensus_10348#0 AAAAAAAAAAAAAAACCTTTTTTTCCCCTTTCTTAAGAAGGGGGAAATTTTTT 1188
consensus_10348#1 GATTGGAGTAATG----------------TTCAGGCGAAAAAAAAAAA----- 664
* * ** *** *** ***
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||