These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_10354#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 622 fasta sequence [TTATCAGACTTCAAAAGTTTGAACCACCTCCGACCCCCCATTCACCCAGAAAATTACATGGCACAACCACCACCATCTTATGACGAAGTCAAT-GGCATGTTTGCATCCTCCTCTGTCGATGATTCAGTGACATCTGTAGATTTCTTCCTAGGAGAGGCCCTTGATTCCTTCAAGGCTGAAAGTGAGTCTGAGCTTAACTTGTCAGCTGGAGACATTGTTATTGTCCGGAAGATATCAACCAATGGTTGGGCAGAAGGCGAATGCAAGGGAAAAGCAGGATGGTTCCCACATGGTTATATCGAAAGACGAGAGCGAGTTCTAGCTAGCAAGGTTCCACATATTTTCTAGGAGTTCGAGGATAAATGTGTGTAGTTTTGATTTCAAATGTTGAAACAGTATATTCGTCTTCTTTGCCCCCACTTATAGCTTCCACGTGATGCTTTCTGATTCATGTGTATAGACTACACTTCGTGTTATTTACAAGTTTTGAATGGTATAGTTTGTAAGACATTTCGGTAGACTGAATTGGCACTAGAGGGCCTTACATAGTTGAACCCTGGTTTCCAAAGGGAGTAAAGTATTTACTGAGGCAGTTCGTAAAAAAAAAATTTAAAAAAAAAAA] [+] EMBL BI809076 [TTATCAGACTTCAAAAGTTTGAACCACCTCCGACCCCCCATTCACCCAGAAAATTACATGGCACAACCACCACCATCTTATGACGAAGTCAAT GGCATGTTTGCATCCTCCTCTGTCGATGATTCAGTGACATCTGTAGATTTCTTCCTAGGAGAGGCCCTTGATTCCTTCAAGGCTGAAAGTGAGTCTGAGCTTAACTTGTCAGCTGGAGACATTGTTATTGTCCGGAAGATATCAACCAATGGTTGGGCAGAAGGCGAATGCAAGGGAAAAGCAGGATGGTTCCCACATGGTTATATCGAAAGACGAGAGCGAGTTCTAGCTAGCAAGGTTCCACATATTTTCTAGGAGTTCGAGGATAAATGTGTGTAGTTTTGATTTCAAATGTTGAAACAGTATATTCGTCTTCTTTGCCCCCACTTATAGCTTCCACGTGATGCTTTCTGATTCATGTGTATAGACTACACTTCGTGTTATTTACAAGTTTTGAATGGTATAGTTTGTAAGACATTTCGGTAGACTGAATTGGCACTAGAGGGCCTTACATAGTTGAACCCTGGTTTCCCAAGGGAGTAAAGTATTTACTGAGGCAGTTCGTAAAAAAAAAA ] [+] EMBL OSC0101 [ gCACCTCCGA CCCCA TCA GCAGAAAATTACATGGCACAGCCACCACCATCTTATGACGAAG CAATNGGCATGTTTGCATCCTCCTCTGTCGATGATTCAGTGACATCTGTAGATTTCTTCCTAGGAGAGGCCCTTGATTCCTTCAAGGCTGAAAGTGAGTCTGAGCTTAACTTGTCAGCTGGAGACATTGTTATTGTCCGGAAGATATCAACCAATGGTTGGGCAGAAGGCGAATGCAAGGGAAAAGCAGGATGGTTCCCACATGGTTATATCGAAAGACGAGAGCGAGTTCTAGCTAGCAAGGTTCCACATATTTTCTAGGAGTTCGAGGATAAATGTGTGTAGTTTTGATTTCAAATGTTG AACAGTATATTCGTCTTCTTTGCCCCCACTTATAGCTTCCACGNGATGCTTTCTGATTCA GGGTATAGNCTACACTT ] [-] EMBL CF312242 [ CAAT GGCATGTTTGCATCCTCCCCTGTCGATGATTCAGTGACATCTGTAGATTTCTTCCTAGGAGAGGCCCTTGATTCCTTCAAGGCTGAAAGTGAGTCTGAGCTTAACTTGTCAGCTGGAGACATTGTTATTGTCCGGAAGATATCAACCAATGGTTGGGCAGAAGGCGAATGCAAGGGAAAAGCAGGATGGTTCCCACATGGTTATATCGAAAGACGAGAGCGAGTTCTAGCTAGCAAGGTTCCACATATTTTCTAGGAGTTCGAGGATAAATGTGTGTAGTTTTGATTTCAAATGTTGAAACAGTATATTCGTCTTCTTTGCCCCCACTTATAGCTTCCACGTGATGCTTTCTGATTCATGTGTATAGACTACACTTCGTGTTATTTACAAGTTTTGAATGGTATAGTTTGTAAGACATTTCGGTAGACTGAATTGGCACTAGAGGGCCTTACATAaaaaa ] [+] EMBL BE040406 [ TTATTGGGCGGAAGATATCAACCAATGGTTGGGCAGAAGGCGAATGCAAGGGAAAAGCAGGATGGTTCCCACATGGTTATATCGAAAGACGAGAGCGAGTTCTAGCTAGCAAGGTTCCACATATTTTCTAGGAGTTCGAGGATAAATGTGTGTAGTTTTGATTTCAAATGTTGAAACAGTATATTCGTCTTCTTTGCCCCCACTTATAGCTTCCACGTGATGCTTTCTGATTCATGTGTATAGACTACACTTCGTGTTATTTACAAGTTTTGAATGGTATAGTTTGTAAGACATTTCGGTAGACTGAATTGGCACTAGAGGGCCTTACATAGTTGAACCCTGGTTTCCAAAGGGAGTAAAGTAaaaaaaa ] [+] EMBL AU096960 [ GCAAGGGAAAAGCAGGATGGTTCCCACATGGTTATATCGAAAGACGAGAGCGAGTTCTAGCTAGCAAGGTTCCACATATTTTCTAGGAGTTCGAGGATAAATGTGTGTAGTTTTGATTTCAAATGTTGAANCAGTATATTCGTCTTCTTTGCCCCCACTTATAGCTTCCACGTGATGCTTTCTGATTCATGTGTATAGACTACACTTCGTGTTATTTNCAAGTTTTGAATGGTATAGTTTGTAAGACATTTCGGTAGNNTNANTTGGCACTAGAGGGCCTTACATAGTTGAACCCTGGTTTCCAAAGGNAGTAAAGTATTTACTNAGNCAGTTCGTAACCTTCTTTTTTAAAAAAAAAAA] consensusID : consensus_10354#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 564 fasta sequence [GAAATATGGCACTGGGAAACACATGTACAAGTGATAACACTTTATCCAAGGCTGCTATGTACTATGGGAAGGCTCGTTCTCTGATGGAAAAGGAACGTGGGAACATGTTGAGAGCATTTGGTACACGGGTGGCAGAGCCACTGCGAGCAATGGTCATGGGTGCGCCTTTAGAAGATGCGAGACATCTAGCCCAAAGATATGACCGAATGAGGCAAGAAGCTGAAGCCCAGGCTGTTGAAGTTTCAAGACGGCAAAACAGAGTAAGAGAGTCAGCTCCGAATGGAGATGTGATAACAAAGCTGGAAGCTGCTGAATACAAACTTGAAGAACTTAAGTCAAGCATGGTAGGATTGNGGAAGGAANGCTGTTGCAGCAATGGCTGCCGTTGAGGCTCAGCAACAAAGATTGACATTACAGCGCCTTATTGCGATGGTTGAAGCCGAAAGAGCCTACCATCAGAGAGTTCTGGAGATCCTTGACCACCTGGAACAAGAAATGGTATCAGAGCGTCAAAAGATTGAAGCACCTCCGACCCCATCAGCAGAAAATTACATGGCACAGCCA] [+] EMBL CF312241 [GAAATATGGCACTGGGAAACACATGTACAAGTGATAACACTTTATCCAAGGCTGCTATGTACTATGGGAAGGCTCGTTCTCTGATGGAAAAGGAACGTGGGAACATGTTGAGAGCATTTGGTACACGGGTGGCAGAGCCACTGCGAGCAATGGTCATGGGTGCGCCTTTAGAAGATGCGAGACATCTAGCCCAAAGATATGACCGAATGAGGCAAGAAGCTGAAGCCCAGGCTGTTGAAGTTTCAAGACGGCAAAACAGAGTAAGAGAGTCAGCTCCGAATGGAGATGTGATAACAAAGCTGGAAGCTGCTGAATACAAACTTGAAGAACTTAAGTCAAGCATGGTAGGATTGNGGAAGGAANGCTGTTGCAGCAATGGCTGCCGTTGAGGCTCAGCAACAAAGATTGACATTACAGCGCCTTATTGCGATGGTTGAAGCCGAAAGAGCCTACCATCAGAGAGTTCTGGAGATCCTTGACCACCTGGAACAAGAAATGGTATCAGAGCGTCAAAAGATTGAAGCACCTCCGACCCCATCAGCAGAAAATTACATGGCACAGCCA] consensusID : consensus_10354#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 344 fasta sequence [ACAAGTTAAGCTCATACATTGTTATTGTCCGGAAGATATCAACCAATGGTTGGGCAGAAGGCGAATGCAAGGGAAAAGCAGGATGGTTCCCACATGGTTATATCTAAAGACGAGAGCGAGTTCTAGCTAGCAAGGTTCCACATATTTTCTAGGAGTTCCAGGATAAATGTGTGTAGTTTTGATTTCAAATGTTGAAACAGTATATTCGTCTTCTTTGCCCCCACTTATAGCTTCCACGTGATGCTTTCTGATTCATGTGTATAGACTACACTTCGTGTTATTTACAAGTTTTGAATGGTATAATTTGTAAGACATTTCGGTAGAAAAAAGAAAACAAAGAAATA] [+] EMBL CB630710 [ACAAGTTAAGCTCATACATTGTTATTGTCCGGAAGATATCAACCAATGGTTGGGCAGAAGGCGAATGCAAGGGAAAAGCAGGATGGTTCCCACATGGTTATATCTAAAGACGAGAGCGAGTTCTAGCTAGCAAGGTTCCACATATTTTCTAGGAGTTCCAGGATAAATGTGTGTAGTTTTGATTTCAAATGTTGAAACAGTATATTCGTCTTCTTTGCCCCCACTTATAGCTTCCACGTGATGCTTTCTGATTCATGTGTATAGACTACACTTCGTGTTATTTACAAGTTTTGAATGGTATAATTTGTAAGACATTTCGGTAGAAAAAAGAAAACAAAGAAATA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_10354#0 TTATCAGACTTCAAAAGTTTGAACCACCTCCGACCCCCCATTCACCCAGAAAATTACATG 60 consensus_10354#2 ------------------------------------------------------------ consensus_10354#1 -----------------------------------GAAATATGGCACTGGGAAACACATG 25 consensus_10354#0 GCACAACCACCACCATCTTATGACGAAGTCAATGGCATGTTTGCATCCTCCTCTGTCGAT 120 consensus_10354#2 ------------------------------------------------------------ consensus_10354#1 TACAAGTGATAACACTTTATCCAAGGCTGCTATGTACTATGGGAAGGCTCGTTCTCTGAT 85 consensus_10354#0 GATTCAGTGACATCTGTAGATTTCTTCCTAGGAGAGGCCCTTGATTCCTTCAAGGCTGAA 180 consensus_10354#2 ------------------------------------------------------------ consensus_10354#1 GGAAAAGGAACGTGGGAACATGTTGAGAGCATTTGGTACACGGGTGGCAGAGCCACTGCG 145 consensus_10354#0 AGTGAGTCTGAGCTTAACTTGTCAGCTGGAGACATTGTTATTGTCCGGAAGATATCAACC 240 consensus_10354#2 ----------------ACAAGTTAAGCTCATACATTGTTATTGTCCGGAAGATATCAACC 44 consensus_10354#1 AGCAATGGTCATGGGTGCGCCTTTAGAAGATGCGAGACATCTAGCCCAAAGATATGACCG 205 * * * * * ** ******* * * consensus_10354#0 AATGGTTGGGCAGAAGGCGAATGCAAGGGAAAAGCAGGATGGTTCCCACATGGTTATATC 300 consensus_10354#2 AATGGTTGGGCAGAAGGCGAATGCAAGGGAAAAGCAGGATGGTTCCCACATGGTTATATC 104 consensus_10354#1 AATGA--GGCAAGAAGCTGAAGCCCAGGCTGTTGAA-----GTTTCAAGACGGCAAAA-C 257 **** ** ***** *** * *** * * *** * * * ** * * * consensus_10354#0 GAAAGACGAGAGCGAGTTCTAGCTAGCAAGGTTCCACATATTTTCTAGGAGTTCGAGGAT 360 consensus_10354#2 TAAAGACGAGAGCGAGTTCTAGCTAGCAAGGTTCCACATATTTTCTAGGAGTTCCAGGAT 164 consensus_10354#1 AGAGTAAGAGAGTCAGCTCCGAATGGAGATGTGATAACAAAGCTGGAAGCTGCTGAATAC 317 * * ***** ** ** * * * ** * * * * * * * consensus_10354#0 AAATGTGTGTAGTTTTGATTTCAAATGTTGAAACAGTATATTCGTCTTCTTTGCCCCCAC 420 consensus_10354#2 AAATGTGTGTAGTTTTGATTTCAAATGTTGAAACAGTATATTCGTCTTCTTTGCCCCCAC 224 consensus_10354#1 AAACTTGAAGAACTTAAGTCAAGCATGGTAGGATTGNGGAAGGAANGCTGTTG----CAG 373 *** ** * ** * *** * * * * *** ** consensus_10354#0 TTATAGCTTCCACGTGATGCTTTCTGATTCATGTGTATAG-ACTACACTTCGT-GTTATT 478 consensus_10354#2 TTATAGCTTCCACGTGATGCTTTCTGATTCATGTGTATAG-ACTACACTTCGT-GTTATT 282 consensus_10354#1 CAATGGCTGCCGT-TGAGGCTCAGCAACAAAGATTGACATTACAGCGCCTTATTGCGATG 432 ** *** ** *** *** * * * * * ** * * * * * ** consensus_10354#0 TACAAGTTTTGAATGGTATAGTTTGTAAGACATTTCGGTAGACTGAATTGGCACTAGAGG 538 consensus_10354#2 TACAAGTTTTGAATGGTATAATTTGTAAGACATTTCGGTAGA--AAAAAGAAAACAAAGA 340 consensus_10354#1 GTTGAAGCCGAAAGAGCCTA--CCATCAGAGAGTTCTGGAGA--TCCTTGACCACCTGGA 488 * ** * ** * *** * *** * *** * * consensus_10354#0 GCCTTACATAGTTGAACCCTGGTTTCCAAAGGGAGTAAAGTATTTACTGAGGCAGTTCGT 598 consensus_10354#2 AATA-------------------------------------------------------- 344 consensus_10354#1 ACAAGAAATGGT---ATCAGAGCGTCAAAA--GATTGAAGCACCT-CCGACCCCATCAGC 542 consensus_10354#0 AAAAAAAAAATTTAAAAAAAAAAA 622 consensus_10354#2 ------------------------ consensus_10354#1 AGAAAATTACATGGCACAGCCA-- 564 |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||