These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_10363#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 1736 fasta sequence [AGGCCGCTGGAGAAGGCCGGGGCGGCGGGGCTGGTCGCGATGCTGGCCGCCGCCGCCGCGCTGCTCCTGCTCGTGTGCGCCGCCTCGCTCCGCTGCTCGGCCGCCGTCGGCTCGGCGCTGGCGGCGCCCAAGAAGCTCCTCAGCGGCGGGGTCTCCATCGAGGAGCCCCGCGGCGGCGGCGCCGGCGGAGGCGGCGGAGGCGAGGAGTGCGACCTGTTCGACGGGGAGTGGGTGTGGGACGACGGCTACCCGCTCTACGCCTCCAGGGATTGCCCCTTCCTCGACGTCGGCTTCCGCTGCTCCGAGAACGGCCGCCCCGACGACTCCTACACCAAGTGGCGATGGCGCCCCTCCCGCTGCGATCTCCCCAGATTTAATGCCAGAAATATGCTAGAGAAACTCAGAAACAGAAGAGTTGTATTTGTTGGGGATTCGATTGCAAGAAACCAATGGGAGTCTCTGCTTTGTATGCTCGCTGCTGCTGTTCCTGACAAGAGCTCCATCTTTGAAGTTAATGGGAATCCTATTACAAAACACATGGGTTTCTTAATTTTCAAGTTTAGAGAGTACAATTGCACTGTGGAGTATTACAGGTCTCCTTTCATAGTCCTTCAAGGTCGTGCACCAGCTGGAGCCCCTGCAGTCGTAAAATATACAATTAGAGTAGATGCCATGGATTGGATGTCTGGCCGGGGTAAGTGGAAGGATGCTGATCTTTTGATCTTTAACACGGGGCACTGGTGGAACCATGAGAAAACAATCAAAGGTGGCGCCTATTTCCAAGAAGGCAACGAGGTCAAAATGGAGATGACTGTTAGAGATGCTTACCAAAGATCCATGCAGACATTGTTTCATTGGCTTCGCAATGAAGTTAACACAAACAAGACCCAGATCATCTTCCGTACATATGCTCCTGTGCATTTCAGAGGTGGTGACTGGAAGACTGGAGGGACCTGCCACTTGGAAACTCTACCAGATGTAACTCCAATTAAATCGCTGGAACCGTGGGCTGACCTGCTTGAACCCATAAATCATGTACTGGGGAACAGCATCACGACCAAGC-TTGTCGGGCTGGATATA-CTGAATGTGA-CTCAGATGA-CAGCTCTGCGT-AAAGACGGGCACCTCTCGGTGTACCTGAGTCCTTCAGGGCCTGCATCTCATCACAGGCAGGATTGCAGCCACTGGTGCCTGCCTGGTGTCCCTGATGCATGGAATGAACTCCTCTATG-CCTTGTTCTTGAGAAGAAAGATGGTGATGCCCCACAATGTTTCAAGTGTGGGAGCTAAAAGACTCAACACTGGGTGATAAAAGCCAAAGGAGTACTGCTGGATGGCCATGTCCTCTCTTACTGAAGCAAAGCTTTCATAACTCATAAGCTAGGTAGCTGAGCTGGGGAGGACACATTTTTGGTAGTACATTAGTACAGTTTGGTTGGCAAGAAGTTAAGCTGCACCACTGTGCTGTGATTTTCAATTGCGGAGGTTAGCGAAAAGAGCTGGGCAAAGGTAACAGTAGCTCTTTTTTTTTTTTCCGATAGTGAAAATCATTGCAACCTCTACATCCAAGTGTATATCCGGTCATGGTAACAATAGCTTAGCCTGTATTATGACGGTGATTTGTGTGTTTCATACAGAATGATTGGTGTAAATATATAGCAGCTGCGAAATGGGCAGCTTGTTTCAGTTGTGTACTACTATGTAATTTGAAGAATTTNGTTTGTGACGCAAAAAAAAAAA] [+] EMBL AK063322 [AGGCCGCTGGAGAAGGCCGGGGCGGCGGGGCTGGTCGCGATGCTGGCCGCCGCCGCCGCGCTGCTCCTGCTCGTGTGCGCCGCCTCGCTCCGCTGCTCGGCCGCCGTCGGCTCGGCGCTGGCGGCGCCCAAGAAGCTCCTCAGCGGCGGGGTCTCCATCGAGGAGCCCCGCGGCGGCGGCGCCGGCGGAGGCGGCGGAGGCGAGGAGTGCGACCTGTTCGACGGGGAGTGGGTGTGGGACGACGGCTACCCGCTCTACGCCTCCAGGGATTGCCCCTTCCTCGACGTCGGCTTCCGCTGCTCCGAGAACGGCCGCCCCGACGACTCCTACACCAAGTGGCGATGGCGCCCCTCCCGCTGCGATCTCCCCAGATTTAATGCCAGAAATATGCTAGAGAAACTCAGAAACAGAAGAGTTGTATTTGTTGGGGATTCGATTGCAAGAAACCAATGGGAGTCTCTGCTTTGTATGCTCGCTGCTGCTGTTCCTGACAAGAGCTCCATCTTTGAAGTTAATGGGAATCCTATTACAAAACACATGGGTTTCTTAATTTTCAAGTTTAGAGAGTACAATTGCACTGTGGAGTATTACAGGTCTCCTTTCATAGTCCTTCAAGGTCGTGCACCAGCTGGAGCCCCTGCAGTCGTAAAATATACAATTAGAGTAGATGCCATGGATTGGATGTCTGGCCGGGGTAAGTGGAAGGATGCTGATCTTTTGATCTTTAACACGGGGCACTGGTGGAACCATGAGAAAACAATCAAAGGTGGCGCCTATTTCCAAGAAGGCAACGAGGTCAAAATGGAGATGACTGTTAGAGATGCTTACCAAAGATCCATGCAGACATTGTTTCATTGGCTTCGCAATGAAGTTAACACAAACAAGACCCAGATCATCTTCCGTACATATGCTCCTGTGCATTTCAGAGGTGGTGACTGGAAGACTGGAGGGACCTGCCACTTGGAAACTCTACCAGATGTAACTCCAATTAAATCGCTGGAACCGTGGGCTGACCTGCTTGAACCCATAAATCATGTACTGGGGAACAGCATCACGACCAAGC TTGTCGGGCTGGATATA CTGAATGTGA CTCAGATGA CAGCTCTGCGT AAAGACGGGCACCTCTCGGTGTACCTGAGTCCTTCAGGGCCTGCATCTCATCACAGGCAGGATTGCAGCCACTGGTGCCTGCCTGGTGTCCCTGATGCATGGAATGAACTCCTCTATG CCTTGTTCTTGAGAAGAAAGATGGTGATGCCCCACAATGTTTCAAGTGTGGGAGCTAAAAGACTCAACACTGGGTGATAAAAGCCAAAGGAGTACTGCTGGATGGCCATGTCCTCTCTTACTGAAGCAAAGCTTTCATAACTCATAAGCTAGGTAGCTGAGCTGGGGAGGACACATTTTTGGTAGTACATTAGTACAGTTTGGTTGGCAAGAAGTTAAGCTGCACCACTGTGCTGTGATTTTCAATTGCGGAGGTTAGCGAAAAGAGCTGGGCAAAGGTAACAGTAGCTCTTTTTTTTTTTTCCGATAGTGAAAATCATTGCAACCTCTACATCCAAGTGTATATCCGGTCATGGTAACAATAGCTT ] [+] EMBL CF323394 [ TCCTTTCATAGTCCTTCAAGGTCGTGCACCAGCTGGAGCCCCTGCAGTCGTAAAATATACAATTAGAGTAGATGCCATGGATTGGATGTCTGGCCGGGGTAAGTGGAAGGATGCTGATCTTTTGATCTTTAACACGGGGCACTGGTGGAACCATGAGAAAACAATCAAAGGTGGCGCCTATTTCCAAGAAGGCAACGAGGTCAAAATGGAGATGACTGTTAGAGATGCTTACCAAAGATCCATGCAGACATTGTTTCATTGGCTTCGCAATGAAGTTAACACAAACAAGACCCAGATCATCTTCCGTACATATGCTCCTGTGCATTTCAGAGGTGGTGACTGGAAGACTGGAGGGACCTGCCACTTGGAAACTCTACCAGATGTAACTCCAATTAAATCGCTGGAACCGTGGGCTGACCTGCTTGAACCCATAAATCATGTACTGGGGAACAGCATCACGACCAAGC TTGTCGGGCTGGATATA CTGAATGTGA CTCAGATGA CAGCTCTGCGT A ] [+] EMBL AU057671 [ TGATCTTTTGATCTTTAACACGGGGCACTGGTGGAACCATGAGAAAACAATCAAAGGTGGCGCCTATTTCCAAGAAGGCAACGAGGTCAAAATGGAGATGACTGTTAGAGATGCTTACCAAAGATCCATGCAGACATTGTTTCATTGGCTTCGCAATGAAGTTAACACAAACAAGACCCAGATCATCTTCCGTACATATGCTCCTGTGCATTTCAGAGGTGGTGACTGGAAGACTGGAGGGACCTGCCACTTGGAAACTCTACCAGATGTAACTCCAATTAAATCGCTGGAACCGTGGGCTGACCTGCTTGAACCCATAAATCATGTACTGGGGAACAGCATCACGACCAAGC TTGTCGGGCTGGATATA CTGAATGTGA CTCAGATGA CAGCTCTGCGTAAAAGACGGGCACCTCTCGGTGTACCTGAGTCCTTCAGGGCCTGCATCTCATCACAGGCAGGATTGCAGCCACTGGTGCCTGCCTGGTGTCCCTGATGCATGGAATGAACTCCTCTATG CCTTGTTCTTGAGAAGAAAGATGGTGATGCCCCACAATGTTTCAAGTGTGGGAGCTAAAAGACTCAACACTGGGTGATAAAAGCCAAAGGAGTACTGCTGGATGGCCATGTCCTCTCTTACTGAAGCAAAGCTTTCATAACTCATAAGCTAGGTAGCTGAGCTGGGGAGGACAC ] [+] EMBL AU057672 [ cacCGCCCAAGCTTTGTCGGNCTGGATATACCTGAATGTGACCTCAGATGACCAGCTCTGCGTAAAAGACGGGCCCCTCTCGGTGTACCTGAGTCCTTCAGGNCCTGC TCTCATCACAGGCAGGATTGCAGCCACTGGTGCCTGCCTGGTGTCCCTGATGC TGGAATGAACTCCTCTATGCCCTTGTTCTTGAGAAGAAAGATGGTGATGCCCCACAATGTTTCAAGTNTGGGAGCTAAAAGACTCAACACTGGGTGATAAAAGCCAAAGGAGTACTGCTGGATGGCCATGTCCTCTCTTACTGAAGCAAAGCTTTCATAACTCATAAGCTAGGTAGCTGAGCTGGGGAGGACACATTTTTGGTAGTACATTAGTACAGTTTGGTTGGCAAGAAGTTAAGCTGCACCACTGTGCTGTGATTTTCAATTGCGGAGGTTAGCGAAAAGAGCTGGGCAAAGGTAACAGTAGCTC TTTTTTTTTTTCCGATAGTGAAAATCATTGCAACCTCTACATCCAAGTGTATATCCGGTCATGGTAACAATAGCTTAGCCTGTATTATGACGGTGATTTGTGTGTTTCATACAGAATGATTGGTGTAAATATATAGCAGCTGCGAAATGGGCAGCTTGTTTCAGTTGTGTACTACTATGTAATTTGAAGAATTTNGTTTGTGACGCAAAAAAAAAAA] consensusID : consensus_10363#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 530 fasta sequence [GAGGAGGAGGAGGAGTGCGACCTGTTCGACGGGGAGTGGGTGTGGAACGACAGCTACCCGCTCTACCACTCCACGGACTGCCCCTTCCTGGACGTCGGGTTCCGGTGCTCCGAGAACGGCCGCCCCGACGCGTCCTACTCCAAGTGGCGGTGGAGGCCGTCGCGCTGCGATCTCCCCAGATTTGATGCCAGAAATATGCTGGAGAAGTTGAGAAACAAAAGAGTAGTATTTGTTGGTGATTCAATTGGGCGGAACCAGTGGGAATCTCTTCTTTGTATGCTCTCTGTTGCTGTTCCTGATAAGAGCTCCATCTTCGAAGTTAATGGGAATCCCATCACAAAACACATGGGTTTCTTAATTTTCAAGTTTAGAGACTACAATTGCACCGTGGAATATTACAGATCTCCTTTTATAGTCCTTCAAGGGCGTGCCCCACCTGGAGCTCCT-GNGGTTGTTAAATATACAATTAGGGTAGATGCCATGGATTGGTTGTCTGACCGGGGCCAGTGGAGGGATGCTGATGTATTGAT] [+] EMBL CF303121 [GAGGAGGAGGAGGAGTGCGACCTGTTCGACGGGGAGTGGGTGTGGAACGACAGCTACCCGCTCTACCACTCCACGGACTGCCCCTTCCTGGACGTCGGGTTCCGGTGCTCCGAGAACGGCCGCCCCGACGCGTCCTACTCCAAGTGGCGGTGGAGGCCGTCGCGCTGCGATCTCCCCAGATTTGATGCCAGAAATATGCTGGAGAAGTTGAGAAACAAAAGAGTAGTATTTGTTGGTGATTCAATTGGGCGGAACCAGTGGGAATCTCTTCTTTGTATGCTCTCTGTTGCTGTTCCTGATAAGAGCTCCATCTTCGAAGTTAATGGGAATCCCATCACAAAACACATGGGTTTCTTAATTTTCAAGTTTAGAGACTACAATTGCACCGTGGAATATTACAGATCTCCTTTTATAGTCCTTCAAGGGCGTGCCCCACCTGGAGCTCCT GNGGTTGTTAAATATACAATTAGGGTAGATGCCATGGATTGGTTGTCTGACCGGGGCCAGTGGAGGGATGCTGATGTATTGAT] [+] EMBL CF304500 [GAGGAGGAGGAGGAGTGCGACCTGTTCGACGGGGAGTGGGTGTGGAACGACAGCTACCC ] [+] EMBL CF324530 [ CGACCTGTTC ACGGGGAGTGGGTGTGGAACGACAGCTACCCGCTCTACCACTCCACGGACTGCCCCTTCCTGGACGTCGGGTTCCGGTGCTCCGAGAACGGCCGCCCCGACGCGTCCTACTCCAAGTGGCGGTGGAGGCCGTCGCGCTGCGATCTCCCCAGATTTGATGCCAGAAATATGCTGGAGAAGTTGAGAAACAAAAGAGTAGTATTTGTTGGTGATTCAATTGGGCGGAACCAGTGGGAATCCCTTCTTTGTATGCTCTCTGTTGCTGTTCCTGATAAGAGCTCCATCTTCGAAGTTAATGGGAATCCCATCACAAAACACATGGGTTTCTTAATTTTCAAGTTTAGAGACTACAATTGCACCGTGGAATATTACAGATCTCCTTTTATAGTCCTTCAAGGGCGTGCCCCACCTGGAGCTCCTGGGGGTTGTTAAATATACAATTAGGGTA ] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_10363#0 AGGCCGCTGGAGAAGGCCGGGGCGGCGGGGCTGGTCGCGATGCTGGCCGCCGCCGCCGCG 60 consensus_10363#1 ------------------------------------------------------------ consensus_10363#0 CTGCTCCTGCTCGTGTGCGCCGCCTCGCTCCGCTGCTCGGCCGCCGTCGGCTCGGCGCTG 120 consensus_10363#1 ------------------------------------------------------------ consensus_10363#0 GCGGCGCCCAAGAAGCTCCTCAGCGGCGGGGTCTCCATCGAGGAGCCCCGCGGCGGCGGC 180 consensus_10363#1 ------------------------------------------------------------ consensus_10363#0 GCCGGCGGAGGCGGCGGAGGCGAGGAGTGCGACCTGTTCGACGGGGAGTGGGTGTGGGAC 240 consensus_10363#1 ------------GAGGAGGAGGAGGAGTGCGACCTGTTCGACGGGGAGTGGGTGTGGAAC 48 * * * ************************************ ** consensus_10363#0 GACGGCTACCCGCTCTACGCCTCCAGGGATTGCCCCTTCCTCGACGTCGGCTTCCGCTGC 300 consensus_10363#1 GACAGCTACCCGCTCTACCACTCCACGGACTGCCCCTTCCTGGACGTCGGGTTCCGGTGC 108 *** ************** ***** *** *********** ******** ***** *** consensus_10363#0 TCCGAGAACGGCCGCCCCGACGACTCCTACACCAAGTGGCGATGGCGCCCCTCCCGCTGC 360 consensus_10363#1 TCCGAGAACGGCCGCCCCGACGCGTCCTACTCCAAGTGGCGGTGGAGGCCGTCGCGCTGC 168 ********************** ****** ********** *** * ** ** ****** consensus_10363#0 GATCTCCCCAGATTTAATGCCAGAAATATGCTAGAGAAACTCAGAAACAGAAGAGTTGTA 420 consensus_10363#1 GATCTCCCCAGATTTGATGCCAGAAATATGCTGGAGAAGTTGAGAAACAAAAGAGTAGTA 228 *************** **************** ***** * ******* ****** *** consensus_10363#0 TTTGTTGGGGATTCGATTGCAAGAAACCAATGGGAGTCTCTGCTTTGTATGCTCGCTGCT 480 consensus_10363#1 TTTGTTGGTGATTCAATTGGGCGGAACCAGTGGGAATCTCTTCTTTGTATGCTCTCTGTT 288 ******** ***** **** * ***** ***** ***** ************ *** * consensus_10363#0 GCTGTTCCTGACAAGAGCTCCATCTTTGAAGTTAATGGGAATCCTATTACAAAACACATG 540 consensus_10363#1 GCTGTTCCTGATAAGAGCTCCATCTTCGAAGTTAATGGGAATCCCATCACAAAACACATG 348 *********** ************** ***************** ** ************ consensus_10363#0 GGTTTCTTAATTTTCAAGTTTAGAGAGTACAATTGCACTGTGGAGTATTACAGGTCTCCT 600 consensus_10363#1 GGTTTCTTAATTTTCAAGTTTAGAGACTACAATTGCACCGTGGAATATTACAGATCTCCT 408 ************************** *********** ***** ******** ****** consensus_10363#0 TTCATAGTCCTTCAAGGTCGTGCACCAGCTGGAGCCCCTGCAGTCGTAAAATATACAATT 660 consensus_10363#1 TTTATAGTCCTTCAAGGGCGTGCCCCACCTGGAGCTCCTGNGGTTGTTAAATATACAATT 468 ** ************** ***** *** ******* **** ** ** ************ consensus_10363#0 AGAGTAGATGCCATGGATTGGATGTCTGGCCGGGGTAAGTGGAAGGATGCTGATCTTTTG 720 consensus_10363#1 AGGGTAGATGCCATGGATTGGTTGTCTGACCGGGGCCAGTGGAGGGATGCTGATGTATTG 528 ** ****************** ****** ****** ****** ********** * *** consensus_10363#0 ATCTTTAACACGGGGCACTGGTGGAACCATGAGAAAACAATCAAAGGTGGCGCCTATTTC 780 consensus_10363#1 AT---------------------------------------------------------- 530 ** consensus_10363#0 CAAGAAGGCAACGAGGTCAAAATGGAGATGACTGTTAGAGATGCTTACCAAAGATCCATG 840 consensus_10363#1 ------------------------------------------------------------ consensus_10363#0 CAGACATTGTTTCATTGGCTTCGCAATGAAGTTAACACAAACAAGACCCAGATCATCTTC 900 consensus_10363#1 ------------------------------------------------------------ consensus_10363#0 CGTACATATGCTCCTGTGCATTTCAGAGGTGGTGACTGGAAGACTGGAGGGACCTGCCAC 960 consensus_10363#1 ------------------------------------------------------------ consensus_10363#0 TTGGAAACTCTACCAGATGTAACTCCAATTAAATCGCTGGAACCGTGGGCTGACCTGCTT 1020 consensus_10363#1 ------------------------------------------------------------ consensus_10363#0 GAACCCATAAATCATGTACTGGGGAACAGCATCACGACCAAGCTTGTCGGGCTGGATATA 1080 consensus_10363#1 ------------------------------------------------------------ consensus_10363#0 CTGAATGTGACTCAGATGACAGCTCTGCGTAAAGACGGGCACCTCTCGGTGTACCTGAGT 1140 consensus_10363#1 ------------------------------------------------------------ consensus_10363#0 CCTTCAGGGCCTGCATCTCATCACAGGCAGGATTGCAGCCACTGGTGCCTGCCTGGTGTC 1200 consensus_10363#1 ------------------------------------------------------------ consensus_10363#0 CCTGATGCATGGAATGAACTCCTCTATGCCTTGTTCTTGAGAAGAAAGATGGTGATGCCC 1260 consensus_10363#1 ------------------------------------------------------------ consensus_10363#0 CACAATGTTTCAAGTGTGGGAGCTAAAAGACTCAACACTGGGTGATAAAAGCCAAAGGAG 1320 consensus_10363#1 ------------------------------------------------------------ consensus_10363#0 TACTGCTGGATGGCCATGTCCTCTCTTACTGAAGCAAAGCTTTCATAACTCATAAGCTAG 1380 consensus_10363#1 ------------------------------------------------------------ consensus_10363#0 GTAGCTGAGCTGGGGAGGACACATTTTTGGTAGTACATTAGTACAGTTTGGTTGGCAAGA 1440 consensus_10363#1 ------------------------------------------------------------ consensus_10363#0 AGTTAAGCTGCACCACTGTGCTGTGATTTTCAATTGCGGAGGTTAGCGAAAAGAGCTGGG 1500 consensus_10363#1 ------------------------------------------------------------ consensus_10363#0 CAAAGGTAACAGTAGCTCTTTTTTTTTTTTCCGATAGTGAAAATCATTGCAACCTCTACA 1560 consensus_10363#1 ------------------------------------------------------------ consensus_10363#0 TCCAAGTGTATATCCGGTCATGGTAACAATAGCTTAGCCTGTATTATGACGGTGATTTGT 1620 consensus_10363#1 ------------------------------------------------------------ consensus_10363#0 GTGTTTCATACAGAATGATTGGTGTAAATATATAGCAGCTGCGAAATGGGCAGCTTGTTT 1680 consensus_10363#1 ------------------------------------------------------------ consensus_10363#0 CAGTTGTGTACTACTATGTAATTTGAAGAATTTNGTTTGTGACGCAAAAAAAAAAA 1736 consensus_10363#1 -------------------------------------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||