These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_10364#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 1228 fasta sequence [CTTTTTTTTTGATGCCCAAGTGGTTACCTGTTCTTCAATTA-C-CACCAGATGCACATAGAATGTTTGAAATTCATTAAAGAGATCTCTTAGTTAAATGATGTCTCTTCATGTCGTCTACAAGAACTGATCTATAACAAAATAGTAGGACCCAACAAGTAGAAAAGATGCAAATCCACTTCGGGCCATTCGTTGACCAATACCACGGAACAGAACATTCCTATCGGCAGGAGATATTCCTGTCTTTCTCTCTATCCAATTTCCTGGTACTTTCCATTTAAGAAGCCTCCTCTCCATCGCGATATACTTTGGTATAACAGTGCATTCCGAACGACTTTTGGCGGTATCAAATGTATGGGAAGCAGCAGCTGCTACAACTCCTGAGAAGCCTGCAGCAAGACTAGAAGCAAAAGGGGATACAGGGCCTGCTTCTTCCAGTTTGCTGGGTTGAGGGTTCATATTAACAGCACTCCAAGTAAGCATCGCTGTGTGTATGAATTGCCAAGTTGAAAAGAACATTCCTCCAAAGACGCAGTCCCGGGTCATCCCTGGTCTAAGTCCTCTCCATAGAGCACCCCATCCTTCAAGTGCTATCACTCTTGAAGGAACCTGAACATCAGAGGGCAATGGGGGCTTCCCTGAACCAGTAAGCATCCACGGATGCTGTTTCAGGGCACCCATCATGTCAGGATGCTTTGGGGAAAGATTGGACAAAAGGCTGACACTGCTATTCCATACTCTGATGTCAGGGACATAACCAGGCAACAGTTTGGAGAGCAGTGGAAATGCCACTTTTGTAATGTTTGCTGGGTCTGTGGCTTTCATTGGTTTCACAGAACCAACTTGGCTCCGAAGTTTCAGAAGTTCAAATGGTGTGCACAAAACTGACTCAACAGCACCAGCAGCTATGCCGGCCAACATAGCCTCAGAGTAAGAAACATAGTTGTCCTCCTTTCCATCTTTATAGAAGGCTGTTAAGAGTTCATAAGTTCCAAAACGTGCTCCCAACCCAGGCAGCTTGCCCAATACTGACCATCCAATGCCACTGTAAAGGCCTGCAGGGCCGGAGGCGGACATGAGCCGGTCCACCACTTGGCCGAGCCCCATCTTCTGCTGCGACCCCGTAGCGCTCAACTGGAGGAGGGTCTTGACGGTGTCGAGCGGGTGGACGGCGACCGCGGAGGCGGTGATCGCCGCGACGCCGGCGGCCGCGTGGCCGGCGAACACGCTG] [+] EMBL CB645849 [CTTTTTTTTTGATGCCCAAGTGGTTACCTGTTCTTC ATTA C CACCAGATGCACATAGAATGTTTGAAATTCATTAAAGAGATCTCTTAGTTAAATGATGTCTCTTCATGTCGTCTACAAGAACTGATCTATAACAAAATAGTAGGACCCAACAAGTAGAAAAGATGCAAATCCACTTCGGGCCATTCGTTGACCAATACCACGGAACAGAACATTCCTATCGGCAGGAGATATTCCTGTCTTTCTCTCTATCCAATTTCCTGGTACTTTCCATTTAAGAAGCCTCCTCTCCATCGCGATATACTTTGGTATAACAGTGCATTCCGAACGACTTTTGGCGGTATCAAATGTATGGGAAGCAGCAGCTGCTACAACTCCTGAGAAGCCTGCAGCAAGACTAGAAGCAAAAGGGGATACAGGGCCTGCTTCTTCCAGTTTGCTGGGTTGAGGGTTCATATTAACAGCACTCCAAGTAAGCATCGCTGTGTGTATGAATTGCCAAGTTGAAAAGAACATTCCTCCAAAGACGCAGTCCCGGGTCATCCCTGGTCTAAGTCCTCTCCATAGAGCACCCCATCCTTCAAGTGCTATCACTCTTGAAGGAACCTGAACATCAGAGGGCAATGGGGGCTTCCCTGAACCAGTAAGCATCCACGGATGCTGTTTCAGGGCACCCATCATGTCAGGATGCTTTGGGGAAAGATTGGACAAAAGGCTGACACTGCTATTCCATACTCTGATGTCAGGGACATAACCAGGCCACAGTTTGGAGAGCAGTGGAAATGCC ] [+] EMBL CB645888 [CTTTTTTTTTGATGCCCAAGTGGTTACCTGTTCTTCAATTC CTCTCCAGATGCACATAGAATGTTTGAAATTCATTAAAGAGATCTCTTAGTTAAATGATGTCTCTTCATGTCGTCTACAAGAACTGATCTATAACAAAATAGTAGGACCCAACAAGTAGAAAAGATGCAAATCCACTTCGGGCCATTCGTTGACCAATACCACGGAACAGAACATTCCTATCGGCAGGAGATATTCCTGTCTTTCTCTCTATCCAATTTCCTGGTACTTTCCATTTAAGAAGCCTCCTCTCCATCGCGATATACTTTGGTATAACAGTGCATTCCGAACGACTTTTGGCGGTATCAAATGTATGGGAAGCAGCAGCTGCTACAACTCCTGAGAAGCCTGCAGCAAGACTAGAAGCAAAAGGGGATACAGGGCCTGCTTCTTCCAGTTTGCTGGGTTGAGGGTTCATATTAACAGCACTCCAAGTAAGCATCGCTGTGTGTATGAATTGCCAAGTTGAAAAGAACATTCCTCCAAAGACGCAGTCCCGGGTCATCCCTGGTCTAAGTCCTCTCCATAGAGCACCCCATCCTTCAAGTGCTATCACTCTTGAAGGAACCTGAACATCAGAGGGCAATGGGGGCTTCCCTGAACCAGTAAGCATCCACGGATGCTGTTTCAGGGCACCCATCATGTCAGGATGCTTTGGGGAAAGATTGGACAAAAGGCTGACACTGCTATTCCATACTCTGATGTCAGGGACATAACCAGG ] [-] EMBL AK059144 [ TGGTTACCTGTTCTTCAATTATT CACCAGATGCACATAGAATGTTTGAAATTCATTAAAGAGATCTCTTAGTTAAATGATGTCTCTTCATGTCGTCTACAAGAACTGATCTATAACAAAATAGTAGGACCCAACAAGTAGAAAAGATGCAAATCCACTTCGGGCCATTCGTTGACCAATACCACGGAACAGAACATTCCTATCGGCAGGAGATATTCCTGTCTTTCTCTCTATCCAATTTCCTGGTACTTTCCATTTAAGAAGCCTCCTCTCCATCGCGATATACTTTGGTATAACAGTGCATTCCGAACGACTTTTGGCGGTATCAAATGTATGGGAAGCAGCAGCTGCTACAACTCCTGAGAAGCCTGCAGCAAGACTAGAAGCAAAAGGGGATACAGGGCCTGCTTCTTCCAGTTTGCTGGGTTGAGGGTTCATATTAACAGCACTCCAAGTAAGCATCG ] [-] EMBL CB645848 [ ATTAACAGCACTCCAAGTAAGCATCGCTGTGTGTATGAATTGCCAAGTTGAAAAGAACATTCCTCCAAAGACGCAGTCCCGGGTCATCCCTGGTCTAAGTCCTCTCCATAGAGCACCCCATCCTTCAAGTGCTATCACTCTTGAAGGAACCTGAACATCAGAGGGCAATGGGGGCTTCCCTGAACCAGTAAGCATCCACGGATGCTGTTTCAGGGCACCCATCATGTCAGGATGCTTTGGGGAAAGATTGGACAAAAGGCTGACACTGCTATTCCATACTCTGATGTCAGGGACATAACCAGGCAACAGTTTGGAGAGCAGTGGAAATGCCACTTTTGTAATGTTTGCTGGGTCTGTGGCTTTCATTGGTTTCACAGAACCAACTTGGCTCCGAAGTTTCAGAAGTTCAAATGGTGTGCACAAAACTGACTCAACAGCACCAGCAGCTATGCCGGCCAACATAGCCTCAGAGTAAGAAACATAGTTGTCCTCCTTTCCATCTTTATAGAAGGCTGTTAAGAGTTCATAAGTTCCAAAACGTGCTCCCAACCCAGGCAGCTTGCCCAATACTGACCATCCAATGCCACTGTAAAGGCCTGCAGGGCCGGAGGCGGACATGAGCCGGTCCACCACTTGGCCGAGCCCCATCTTCTGCTGCGACCCCGTAGCGCTCAACTGGAGGAGGGTCTTGACGGTGTCGAGCGGGTGGACGGCGACCGCGGAGGCGGTGATCGCCGCGACGCCGGCGGCCGCGTGGCCGGCGAACACGCTG] [-] EMBL CB645887 [ AATTGCCAAGTGAAAAAGAACATTCCTCCAAAGACGCAGTCCCGGGTCATCCCTGGTCTAAGTCCTCTCCATAGAGCACCCCATCCTTCAAGTGCTATCACTCTTGAAGGAACCTGAACATCAGAGGGCAATGGGGGCTTCCCTGAACCAGTAAGCATCCACGGATGCTGTTTCAGGGCACCCATCATGTCAGGATGCTTTGGGGAAAGATTGGACAAAAGGCTGACACTGCTATTCCATACTCTGATGTCAGGGACATAACCAGGCAACAGTTTGGAGAGCAGTGGAAATGCCACTTTTGTAATGTTTGCTGGGTCTGTGGCTTTCATTGGTTTCACAGAACCAACTTGGCTCCGAAGTTTCAGAAGTTCAAATGGTGTGCACAAAACTGACTCAACAGCACCAGCAGCTATGCCGGCCAACATAGCCTCAGAGTAAGAAACATAGTTGTCCTCCTTTCCATCTTTATAGAAGGCTGTTAAGAGTTCATAAGTTCCAAAACGTGCTCCCAACCCAGGCAGCTTGCCCAATACTGACCATCCAATGCCACTGTAAAGGCCTGCAGGGCCGGAGGCGGACATGAGCCGGTCCACCACTTGGCCGAGCCCCATCTTCTGCTGCGACCCCGTAGCGCTCAACTGGAGGAGGGTCTTGACGGTGTCGAGCGGGTGGACGGCGACCGCGGAGGCGGTGATCGCCGCGACGCCGGCGGCCGCGTGGCCGGCGAACGCGCTG] consensusID : consensus_10364#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 613 fasta sequence [AACTAGTCTCGAGTTTTTTTTTTTTTTTTTTAAAATCTTATGATGAAATTAACCTTGAACAATAATGAAGACATATTTTTTTCTCACAAAATCCTTATCAAAAACTTAAAAAGGATCTTCAGTAGTTGCTACTCATCAGTCATCCTACCAACAATACGGTTTCCATACAAGATACTTGTTATCTCTTCAACAAAAGCCTGATACCAAAAGAGGCAGCCTTGAATTCTGTTCTTCAATTATTCACCAGATGCACATAGAATGTTTGAAATTCATTAAAGAGATCTCTTAGTTAAATGATGTCTCTTCATGTCGTCTACAAGAACTGATCTATAACAAAATAGTAGGACCCAACAAGTAGAAAAGATGCAAATCCACTTCGGGCCATTCGTTGACCAATACCACGGAACAGAACATTCCTATCGGCAGGAGATATTCCTGTCTTTCTCTCTATCCAATTTCCTGGTACTTTCCATTTAAGAAGCCTCCTCTCCATCGCGATATACTTTGGTATAACAGTGCATTCCGAACGACTTTTGGCGGTATCAAATGTATGGGAAGCAGCAGCTGCTACAACTCCTGAGAAGCCTGCAGCAAGACTAGAAGCAAAAGGGGA] [+] EMBL CF323401 [AACTAGTCTCGAGTTTTTTTTTTTTTTTTTTAAAATCTTATGATGAAATTAACCTTGAACAATAATGAAGACATATTTTTTTCTCACAAAATCCTTATCAAAAACTTAAAAAGGATCTTCAGTAGTTGCTACTCATCAGTCATCCTACCAACAATACGGTTTCCATACAAGATACTTGTTATCTCTTCAACAAAAGCCTGATACCAAAAGAGGCAGCCTTGAATTCTGTTCTTCAATTATTCACCAGATGCACATAGAATGTTTGAAATTCATTAAAGAGATCTCTTAGTTAAATGATGTCTCTTCATGTCGTCTACAAGAACTGATCTATAACAAAATAGTAGGACCCAACAAGTAGAAAAGATGCAAATCCACTTCGGGCCATTCGTTGACCAATACCACGGAACAGAACATTCCTATCGGCAGGAGATATTCCTGTCTTTCTCTCTATCCAATTTCCTGGTACTTTCCATTTAAGAAGCCTCCTCTCCATCGCGATATACTTTGGTATAACAGTGCATTCCGAACGACTTTTGGCGGTATCAAATGTATGGGAAGCAGCAGCTGCTACAACTCCTGAGAAGCCTGCAGCAAGACTAGAAGCAAAAGGGGA] consensusID : consensus_10364#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 591 fasta sequence [TTTTTTTTTTTTTGAACAAAGTACAGGAACAATCATGGATGCCCAAGTGGTTACCTGTTCTTCAATTATTCACCAAATGCACATAGAAGGTTTGAAATTCATTAAAGAGATCTCTTAGTTAAATGATGTCTCTTCATGTCGTCTACAAAAACTGATCTATAACAAAATAGTAGGACCCAACAAGTAGAAAAGATGCAAATCCACTTCGGGCCATTCGTTGACCAATACCACGGAACAGAACATTCCTATCGGCAGGAGATATTCCTGTCTTTCTCTCTATCCAATTTCCTGGTACTTTCCATTTAAGAAGCCTCCTCTCCATCGCGATATACTTTGGTATAACAGTGCATTCCGAACGACTTTTGGCGGTATCAAATGTATGGGAAGCAGCAGCTGCTACAACTCCTGAGAAGCCTGCAGCAAGACTAGAAGCAAAAGGGGATACAGGGCCTGCTTCTTCCAGTTTGCTGGGTTGAGGGTTCATATTAACAGCACTCCAAGTAAGCATCGCTGTGTGTATGAATTGCCAAGTTGAAAAGAACATTCCTCCAAAGACGCAGTCCCGGGTCATCCCCCCTTGTCTCGGCCTCT] [+] EMBL CA762639 [TTTTTTTTTTTTTGAACAAAGTACAGGAACAATCATGGATGCCCAAGTGGTTACCTGTTCTTCAATTATTCACCAAATGCACATAGAAGGTTTGAAATTCATTAAAGAGATCTCTTAGTTAAATGATGTCTCTTCATGTCGTCTACAAAAACTGATCTATAACAAAATAGTAGGACCCAACAAGTAGAAAAGATGCAAATCCACTTCGGGCCATTCGTTGACCAATACCACGGAACAGAACATTCCTATCGGCAGGAGATATTCCTGTCTTTCTCTCTATCCAATTTCCTGGTACTTTCCATTTAAGAAGCCTCCTCTCCATCGCGATATACTTTGGTATAACAGTGCATTCCGAACGACTTTTGGCGGTATCAAATGTATGGGAAGCAGCAGCTGCTACAACTCCTGAGAAGCCTGCAGCAAGACTAGAAGCAAAAGGGGATACAGGGCCTGCTTCTTCCAGTTTGCTGGGTTGAGGGTTCATATTAACAGCACTCCAAGTAAGCATCGCTGTGTGTATGAATTGCCAAGTTGAAAAGAACATTCCTCCAAAGACGCAGTCCCGGGTCATCCCCCCTTGTCTCGGCCTCT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_10364#0 ------------------------------------------------------------ consensus_10364#2 ------------------------------------------------------------ consensus_10364#1 AACTAGTCTCGAGTTTTTTTTTTTTTTTTTTAAAATCTTATGATGAAATTAACCTTGAAC 60 consensus_10364#0 ------------------------------------------------------------ consensus_10364#2 ------------------------------------------------------------ consensus_10364#1 AATAATGAAGACATATTTTTTTCTCACAAAATCCTTATCAAAAACTTAAAAAGGATCTTC 120 consensus_10364#0 ------------------------------------------------------------ consensus_10364#2 ------------------------------------------------------TTTTTT 6 consensus_10364#1 AGTAGTTGCTACTCATCAGTCATCCTACCAACAATACGGTTTCCATACAAGATACTTGTT 180 consensus_10364#0 ---------------------CTTTTTTTTTGATGCCCAAGTGGTTACCTGTTCTTCAAT 39 consensus_10364#2 TTTTTTTGAACAAAGTACAGGAACAATCATGGATGCCCAAGTGGTTACCTGTTCTTCAAT 66 consensus_10364#1 ATCTCTTCAACAAAAGCCTGATACCAAAAGAGGCAGCC---TTGAATTCTGTTCTTCAAT 237 * ** * * ************ consensus_10364#0 TAC-CACCAGATGCACATAGAATGTTTGAAATTCATTAAAGAGATCTCTTAGTTAAATGA 98 consensus_10364#2 TATTCACCAAATGCACATAGAAGGTTTGAAATTCATTAAAGAGATCTCTTAGTTAAATGA 126 consensus_10364#1 TATTCACCAGATGCACATAGAATGTTTGAAATTCATTAAAGAGATCTCTTAGTTAAATGA 297 ** ***** ************ ************************************* consensus_10364#0 TGTCTCTTCATGTCGTCTACAAGAACTGATCTATAACAAAATAGTAGGACCCAACAAGTA 158 consensus_10364#2 TGTCTCTTCATGTCGTCTACAAAAACTGATCTATAACAAAATAGTAGGACCCAACAAGTA 186 consensus_10364#1 TGTCTCTTCATGTCGTCTACAAGAACTGATCTATAACAAAATAGTAGGACCCAACAAGTA 357 ********************** ************************************* consensus_10364#0 GAAAAGATGCAAATCCACTTCGGGCCATTCGTTGACCAATACCACGGAACAGAACATTCC 218 consensus_10364#2 GAAAAGATGCAAATCCACTTCGGGCCATTCGTTGACCAATACCACGGAACAGAACATTCC 246 consensus_10364#1 GAAAAGATGCAAATCCACTTCGGGCCATTCGTTGACCAATACCACGGAACAGAACATTCC 417 ************************************************************ consensus_10364#0 TATCGGCAGGAGATATTCCTGTCTTTCTCTCTATCCAATTTCCTGGTACTTTCCATTTAA 278 consensus_10364#2 TATCGGCAGGAGATATTCCTGTCTTTCTCTCTATCCAATTTCCTGGTACTTTCCATTTAA 306 consensus_10364#1 TATCGGCAGGAGATATTCCTGTCTTTCTCTCTATCCAATTTCCTGGTACTTTCCATTTAA 477 ************************************************************ consensus_10364#0 GAAGCCTCCTCTCCATCGCGATATACTTTGGTATAACAGTGCATTCCGAACGACTTTTGG 338 consensus_10364#2 GAAGCCTCCTCTCCATCGCGATATACTTTGGTATAACAGTGCATTCCGAACGACTTTTGG 366 consensus_10364#1 GAAGCCTCCTCTCCATCGCGATATACTTTGGTATAACAGTGCATTCCGAACGACTTTTGG 537 ************************************************************ consensus_10364#0 CGGTATCAAATGTATGGGAAGCAGCAGCTGCTACAACTCCTGAGAAGCCTGCAGCAAGAC 398 consensus_10364#2 CGGTATCAAATGTATGGGAAGCAGCAGCTGCTACAACTCCTGAGAAGCCTGCAGCAAGAC 426 consensus_10364#1 CGGTATCAAATGTATGGGAAGCAGCAGCTGCTACAACTCCTGAGAAGCCTGCAGCAAGAC 597 ************************************************************ consensus_10364#0 TAGAAGCAAAAGGGGATACAGGGCCTGCTTCTTCCAGTTTGCTGGGTTGAGGGTTCATAT 458 consensus_10364#2 TAGAAGCAAAAGGGGATACAGGGCCTGCTTCTTCCAGTTTGCTGGGTTGAGGGTTCATAT 486 consensus_10364#1 TAGAAGCAAAAGGGGA-------------------------------------------- 613 **************** consensus_10364#0 TAACAGCACTCCAAGTAAGCATCGCTGTGTGTATGAATTGCCAAGTTGAAAAGAACATTC 518 consensus_10364#2 TAACAGCACTCCAAGTAAGCATCGCTGTGTGTATGAATTGCCAAGTTGAAAAGAACATTC 546 consensus_10364#1 ------------------------------------------------------------ consensus_10364#0 CTCCAAAGACGCAGTCCCGGGTCATCCC---TGGTCTAAGTCCTCTCCATAGAGCACCCC 575 consensus_10364#2 CTCCAAAGACGCAGTCCCGGGTCATCCCCCCTTGTCTCGG-CCTCT-------------- 591 consensus_10364#1 ------------------------------------------------------------ consensus_10364#0 ATCCTTCAAGTGCTATCACTCTTGAAGGAACCTGAACATCAGAGGGCAATGGGGGCTTCC 635 consensus_10364#2 ------------------------------------------------------------ consensus_10364#1 ------------------------------------------------------------ consensus_10364#0 CTGAACCAGTAAGCATCCACGGATGCTGTTTCAGGGCACCCATCATGTCAGGATGCTTTG 695 consensus_10364#2 ------------------------------------------------------------ consensus_10364#1 ------------------------------------------------------------ consensus_10364#0 GGGAAAGATTGGACAAAAGGCTGACACTGCTATTCCATACTCTGATGTCAGGGACATAAC 755 consensus_10364#2 ------------------------------------------------------------ consensus_10364#1 ------------------------------------------------------------ consensus_10364#0 CAGGCAACAGTTTGGAGAGCAGTGGAAATGCCACTTTTGTAATGTTTGCTGGGTCTGTGG 815 consensus_10364#2 ------------------------------------------------------------ consensus_10364#1 ------------------------------------------------------------ consensus_10364#0 CTTTCATTGGTTTCACAGAACCAACTTGGCTCCGAAGTTTCAGAAGTTCAAATGGTGTGC 875 consensus_10364#2 ------------------------------------------------------------ consensus_10364#1 ------------------------------------------------------------ consensus_10364#0 ACAAAACTGACTCAACAGCACCAGCAGCTATGCCGGCCAACATAGCCTCAGAGTAAGAAA 935 consensus_10364#2 ------------------------------------------------------------ consensus_10364#1 ------------------------------------------------------------ consensus_10364#0 CATAGTTGTCCTCCTTTCCATCTTTATAGAAGGCTGTTAAGAGTTCATAAGTTCCAAAAC 995 consensus_10364#2 ------------------------------------------------------------ consensus_10364#1 ------------------------------------------------------------ consensus_10364#0 GTGCTCCCAACCCAGGCAGCTTGCCCAATACTGACCATCCAATGCCACTGTAAAGGCCTG 1055 consensus_10364#2 ------------------------------------------------------------ consensus_10364#1 ------------------------------------------------------------ consensus_10364#0 CAGGGCCGGAGGCGGACATGAGCCGGTCCACCACTTGGCCGAGCCCCATCTTCTGCTGCG 1115 consensus_10364#2 ------------------------------------------------------------ consensus_10364#1 ------------------------------------------------------------ consensus_10364#0 ACCCCGTAGCGCTCAACTGGAGGAGGGTCTTGACGGTGTCGAGCGGGTGGACGGCGACCG 1175 consensus_10364#2 ------------------------------------------------------------ consensus_10364#1 ------------------------------------------------------------ consensus_10364#0 CGGAGGCGGTGATCGCCGCGACGCCGGCGGCCGCGTGGCCGGCGAACACGCTG 1228 consensus_10364#2 ----------------------------------------------------- consensus_10364#1 ----------------------------------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||