These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_10376#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 6 consensus length = 455 fasta sequence [TGGTTAGCGAGCGCGTGCGGCGGCAGGCATTGAACCCTGTGATCGAGCGATCGAGCTAGCTAGACTTCCAGCACGAGCGGCGATGTCGACGACGGCGGCGACGACGCTGGGGCGCGAGCTCCTGGAGGCGGCGAGGGCGCCGGAGTTCGCGGGGTGGCTGCNCGGCCTGCGCCGCCGCATCCACCAGCACCC-GGAGCTCGCGTTCCAGGAGCACCGCACCAGCGCGCTCGTGCGCCGG-AAGC-T-GGACGCGCTCG-GCGTCGCGTACGTTTGGCCCGTCGCGCAGACCGGCGTCGTTGCCANCGTCGTTCNGCGCCGCCGGCCCCGGCNCCGTGTTCAGGCTCCGCGCCGANATGGACGGCGCTCCCCATCCAGGAAATGGTAAGAATNGGAAATTCAAGAGCTTTGGAAANATGGGAAAAGATGCCATGACGTGTANGGGCACGATGTTCATNGTC] [+] EMBL OSS4577A [TGGTTAGCGAGCGCGTGCGGCGGCAGGCATTGAACCCTGTAATCGAGCGATCGAGCTAGCTAGACTTCCAGCACGAGCGGCGATGTCGACGACGGCGGCGACGACGCTGGGGNGCGA NTCCTGGAGGCGGCGAGGGCGCCGGANTTCGCGGGGTGGCTGCNCGGCCTGCNNCGGCGCATCNACCAGCACCC GGAGCTCGCGTTCC ] [+] EMBL OSS4113A [ CGAGCGCGTGCGGCGGCAGGCATTGAACCCTGTGATCGAGCGATCGAGCTAGCTAGACTTCCAGCACGAGCGGCGATGTCGACGACGTCGGCGACGACGCTGGGGCGCGAGCTCCTGGAGGCGGCGAGGGCGTCGGAGTTCGCGTGGTGGCTGCGCGGCCTGCGCCGNCGCATCCACCAGCACCCTGGAGCTCGNGTTCCAGGAGCACCGNACCAGCGCGCTCGTGCGGCGG AAGC T GG ] [+] EMBL AU076300 [ GGCGGCAGGCATTGAACCCTGTGATCGAGCGATCGAGCTAGCTAGACTTCCAGCACGAGCGGCGATGTCGACGACGGCGGCGACGACGCTGGGGCGCGAGCTCCTGGAGGCGGCGAGGGCGCCGGAGTTCGNGGGGTGGCTGCGCGGCCTGCGCCGCCGCATCCACCAGCACCC GGAGCTCGCGTTCCAGGAGNACCGCACCAGCGCGCTCGTGCGCCGG AAGC T GGACGCGCTCGAGCGTCGCGTACGTGTGGCCCGTCGCGCAGACCGGCGTCGTTGCCANCGTCGTTCNGCGCCGCCGGCCCCGGCNCCGTGTTCAGGCTCCGCGCCGANATGGACGGCGCTCCCCATCCAGGAAATGGTAAGAATNGGAAATTCAAGAGCTTTGGAAANATGGGAAAAGATGCCATGACGTGTANGGGCACGATGTTCATNGTC] [+] EMBL AU066068 [ GGCGGCAGGCATTGAACCCTGTNATCGAGCGATCGAGCTAGCTAGACTTCCAGCACGAGCGGCGATGTCGACGACGGCGGCGACGACGCTGGGGCGCGAGCTCCTGGAGGCGGCGAGGGCGCCGGAGTTCGCGGGGTGGCTGCNCGGCCTGCGCCGACGCATCCACCAGCACCC GGAGCTCGCGTTCCAGGAGCACCGCACCAGCGCGCTCGTGCGCGGGNAAGC TNNGACGCGCTCG GCGTCGCGTACGTTTGGCCCGTCGCGCAGACCGGCGTCGTTGCCAcc ] [+] EMBL OSS1880A [ AGGCATTGAACCCTGTGATCGAGCGATCGAGCTAGCTAGACTTCCAGCACGAGCGGCGATGTCGACGACGGCGGCGACGACGCTGGGGCGCGAGCTCCTGGAGGCGGCGAGGGCGCCGGAGTTCGCGGGGTGGCTGCGCGGCCTGCGCCG CGCATCCACCAGCACCC GGAGCTCGCGTTCCAGGAGCACCGCACCAGCGCGCTCGTGC CGGN NAGCTT GGACGCGCTCG GCGTCGCGTACGTTTGGCCCGTCGCGCAGACCGGCGTCGTTGCCANCGTCG TCGGCGCCG CGGCCCCGGCCCCGTGTTCGGGCTTCGCGCCGACATGGAC GCGCTTCCCATTCAGGAAATTGT AGAATGGGA ] [+] EMBL OSS2391A [ AGGCATTGAACCCTGTGATCGAGCGATCGAGCTAGCTAGACTTCCAGCACGAGNGGCGATGTCGACGACGGCGGCGACGACGCTGGGGNGCGA CTCCTGGAGGCGGCGAGGGCGCCGGAGTTCGCGNGGTGGCTGCNCGGCCTGCGCCGCCGCATCCACCAGNACCC GGAGCTCGCGTTCCAGGAG ] consensusID : consensus_10376#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 222 fasta sequence [TGCGGCGGCAGGCATTGAACCCTGTGATCGAGCGATCGAGCTAGCTAGACTTCCAGCACGTCGGCGCCCGCNGCCCCGGCCCCGTGTTCGGGGCTTCCGCGGCCGACAATGGACGNGCTTCCCAATCCAGGAAATGGTAGAATGGGAATTCAAGAGCTTTGGAAGATGGAAAGATGCATGCGTTTTGGGCACGATTGTTCATGTCGCAATTCTTCTGGGGGA] [+] EMBL OSS1509A [TGCGGCGGCAGGCATTGAACCCTGTGATCGAGCGATCGAGCTAGCTAGACTTCCAGCACGTCGGCGCCCGCNGCCCCGGCCCCGTGTTCGGGGCTTCCGCGGCCGACAATGGACGNGCTTCCCAATCCAGGAAATGGTAGAATGGGAATTCAAGAGCTTTGGAAGATGGAAAGATGCATGCGTTTTGGGCACGATTGTTCATGTCGCAATTCTTCTGGGGGA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_10376#0 TGGTTAGCGAGCGCGTGCGGCGGCAGGCATTGAACCCTGTGATCGAGCGATCGAGCTAGC 60 consensus_10376#1 ---------------TGCGGCGGCAGGCATTGAACCCTGTGATCGAGCGATCGAGCTAGC 45 ********************************************* consensus_10376#0 TAGACTTCCAGCACGAGCGGCGATGTCGACGACGGCGGCGACGACGCTGGGGCGCGAGCT 120 consensus_10376#1 TAGACTTCCAGCA----CGTCGGCGCCCGCNGCCCCGGCCCCGTGTTCGGGGCTTCCGCG 101 ************* ** ** * * * * **** ** ***** ** consensus_10376#0 CCTGGAGGCGGCGAGGGCGCCGGAGTTCGCGGGGTGGCTGCNCGGCCTGCGCCGCCGCAT 180 consensus_10376#1 GCCGACAATGG-ACGNGCTTCCCAATCCAGGAAATGGTAGAATGGGA-ATTCAAGAGCTT 159 * * ** * ** * * * * * *** * ** * ** * consensus_10376#0 CCACCAGCACCCGGA-GCTCGCGTTCCAGGAGCACCGCACCAGCGCGCTCGTGCGCCGGA 239 consensus_10376#1 TGGAAGATGGAAAGATGCATGCGTTTTGGGCACGATTGTTCATGTCGCAATTCTTCTGGG 219 ** ** ***** ** * ** *** * * ** consensus_10376#0 AGCTGGACGCGCTCGGCGTCGCGTACGTTTGGCCCGTCGCGCAGACCGGCGTCGTTGCCA 299 consensus_10376#1 GGA--------------------------------------------------------- 222 * consensus_10376#0 NCGTCGTTCNGCGCCGCCGGCCCCGGCNCCGTGTTCAGGCTCCGCGCCGANATGGACGGC 359 consensus_10376#1 ------------------------------------------------------------ consensus_10376#0 GCTCCCCATCCAGGAAATGGTAAGAATNGGAAATTCAAGAGCTTTGGAAANATGGGAAAA 419 consensus_10376#1 ------------------------------------------------------------ consensus_10376#0 GATGCCATGACGTGTANGGGCACGATGTTCATNGTC 455 consensus_10376#1 ------------------------------------ |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||