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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_10381#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 6 consensus length = 1322 fasta sequence
[TCCCCGAACCCTAGCCCCGCTCTCGGGGGTTCCCCCTCCTCCTCCGCCGCCCGCCGCGTCCGCCACTTCCATCGGAGGTGATCGATCGAGCGGGGGTGGGGGGAGAGGTTGGGCGGCTTGGATTGGAGAGGGCTCGGAGTGGATGTCGAGGAGGTCGGTGAATCCGAGCCGGCGGGTGGCGGATGGGGGATTGCCGTCTGTCGGTGGCCTGCTTCACCCCAAGTCACGCTCGCCGCCCGTGCTCACCATCG-CCTCGTGGTCCTGGGTGTCATTATTCTGATCGNCTACTTCAATAGCGGCTCAGGTGTAACAGTTACTAGCAGAGAAGCTGTGAGCAGGTCTNAAGGTTCTTGTACAACAGAAGTCATGCAAGCACTTCCTTATCTTAAAAAGGCATATTGCAATNAGTTTCAT-AAGGTTCTCCATGTTGGCCCTGATAGTTGTACAGTAGTTTCTAACTTGTTGAAGGAAGGGAAGGTTGAAGCATGGGGAGTGGAGCCTTATGATTTGGAGGATACTGATAGTAGCTGCAAAAGCCTTGTGCGCAAGGGCTTTGTTCGTATGGCTGATATCAAGTTCCCTCTTCCATACCGCCAAGATTCCTTTAACCTTGTTATCGTATCAGATGCTTTGGATTATTTGACCCCAAGATATCTGAACAAAACACTTCCAGATTTAGCAAGGATTTCTACAGATGGTCTTGTTATCTTTGCCG-GCAATCCAGGTCAACAGAAGGCTAAGGTTTCTGAACTACCAAAATTCGGAAGACCGGCAAAGTTGCGGAGTTCTTCGTGGTGGTCGCGATACTTTATCCAGACTGGCTTGAGAGAGAATGAAGGGCCATTGAAGAAGTTTGAGCAGGCTGCTTCCAAGAACAAATACAAACCAGACTGTCAAATCTTCCATCTTAGCTCGTAGGCGTGTTCTGATCTAGGTGATGTGTATCCATGAAACCTGGATCGTTGCCTCGCCGGTTTTGTAAGCAATAT-CCTGTTTAC-CCCC-GTTGA-CTTGCGCTTC-TTTTACACGGA-GGAATTGTCACATTAAGAG-CCAGCCAGCCTT-GAGCATA-GGTA-GC-TTATG-TA-GAGA-GATTTGCCACATGCTGCTAGAAAATTCTTCCTGGAAAGTTAAATTATGTGTTACCAAGAGG-TGCAAATTGAAGCCCTGAGGATATATATGTAAGAACTTCACACTGTTGTACCCTGTTATTCTTCTTGGTGTTACAGTTATTCCTGGTGAACCAGCTGCAGTTCCGTGAGCAGTTTGTAATGTACTCAGTTCAAGAGAGAG-AAAAAAAATATATATCTACCCTTTGTCTGCTAAAAAAA]
[+] EMBL C91712 [TCCCCGAACCCTAGCCCCGCTCTCGGGGGTTCCCCCTCCTCCTCCGCCGCCCGCCGCGTCCGCCACTTCCATCGGAGGTGATCGATCGAGCGGGGGTGGGGGGAGAGGTTGGGCGGCTTGGATTGGAGAGGGCTCGGAGTGGATGTCGAGGAGGTCGGTGAATCCGAGCCGGCGGGTGGCGGATGGGGGATTGCCGTCTGTCGGTGGCCTGCTTCACCCCAAGTCACGCTCGCCGCCCGTGCTCACCATCG CCTCGTGGTCCTGGGTGTCATTATTCTGATCGNCTACTTCAATAGCGGCTCAGGTGTAACAGTTACTAGCAGAGAAGCTGTGAGCAGGTCTNAAGGTTCTTGTACAACAGAAGTCATGCAAGCACTTCCTTATCTTAAAAAGGCATATTGCAATNAGTTTCATAAAGGTTCTCCATGTTNGCCCTGATAGT ]
[+] EMBL AK101834 [ CACTTCCATCGGAGGTGATCGATCGAGCGGGGGTGGGGGGAGAGGTTGGGCGGCTTGGATTGGAGAGGGCTCGGAGTGGATGTCGAGGAGGTCGGTGAATCCGAGCCGGCGGGTGGCGGATGGGGGATTGCCGTCTGTCGGTGGCCTGCTTCACCCCAAGTCACGCTCGCCGCCCGTGCTCACCATCGCCCTCGTGGTCCTGGGTGTCATTATTCTGATCGCCTACTTCAATAGCGGCTCAGGTGTAACAGTTACTAGCAGAGAAGCTGTGAGCAGGTCTGAAGGTTCTTGTACACCAGAAGTCATGCAAGCACTTCCTTATCTTAAAAAGGCATATGGCAATGAGTTGCAT AAGGTTCTCCATGTTGGCCCTGATAGTTGTACAGTAGTTTCTAACTTGTTGAAGGAAGGGAAGGTTGAAGCATGGGGAGTGGAGCCTTATGATTTGGAGGATACTGATAGTAGCTGCAAAAGCCTTGTGCGCAAGGGCTTTGTTCGTATGGCTGATATCAAGTTCCCTCTTCCATACCGCCAAGATTCCTTTAACCTTGTTATCGTATCAGATGCTTTGGATTATTTGACCCCAAGATATCTGAACAAAACACTTCCAGATTTAGCAAGGATTTCTACAGATGGTCTTGTTATCTTTGCCG GCAATCCAGGTCAACAGAAGGCTAAGGTTTCTGAACTACCAAAATTCGGAAGACCGGCAAAGTTGCGGAGTTCTTCGTGGTGGTCGCGATACTTTATCCAGACTGGCTTGAGAGAGAATGAAGGGCCATTGAAGAAGTTTGAGCAGGCTGCTTCCAAGAACAAATACAAACCAGACTGTCAAATCTTCCATCTTAGCTCGTAGGCGTGTTCTGATCTAGGTGATGTGTATCCATGAAACCTGGATCGTTGCCTCGCCGGTTTTGTAAGCAATAT CCTGTTTAC CCCC GTTGA CTTGCGCTTC TTTTACACGGA GGAATTGTCACATTAAGAG CCAGCCAGCCTT GAGCATA GGTA GC TTATG TA GAGA GATTTGCCACATGCTGCTAGAAAATTCTTCCTGGAAAGTTAAATTATGTGTTACCAAGAGG TGCAAATTGAAGCCCTGAGGATATATATGTAAGAACTTCACACTGTTGTACCCTGTTATTCTTCTTGGTGTTACAGTTATTCCTGGTGAACCAGCTGCAGTTCCGTGAGCAGTTTGTAATGTACTCAGTTCAAGAGAGAG AGAAAAA ]
[+] EMBL CA767261 [ TGTTGGCCCTGATAGTTGTACAGTAGTTTCTAACTTGTTGAAGGAAGGGAAGGTTGAAGCATGGGGAGTGGAGCCTTATGATTTGGAGGATACTGATAGTAGCTGCAAAAGCCTTGTGCGCAAGGGCTTTGTTCGTATGGCTGATATCAAGTTCCCTCTTCCATACCGCCAAGATTCCTTTAACCTTGTTATCGTATCAGATGCTTTGGATTATTTGACCCCAAGATATCTGAACAAAACACTTCCAGATTTAGCAAGGATTTCTACAGATGGTCTTGTTATCTTTGCCG GCAATCCAGGTCAACAGAAGGCTAAGGTTTCTGAACTACCAAAATTCGGAAGACCGGCAAAGTTGCGGAGTTCTTCGTGGTGGTCGCGATACTTTATCCAGACTGGCTTGAGAGAGAATGAAGGGCCATTGAAGAAGTTTGAGCAGGCTGCTTCCAAGAACAAATACAAACCAGACTGTCAAATCTTCCATCTTAGCTCGTANGCGTGNTCTGATCTAGGCGATGTGTATCCATGAAACCTGNATCGTTGCCTCGCCGNTTTTGTAAGCAATATCCCTGTTTAC CCCC GTTGANCTTGCGCTTN TTTTA ]
[-] EMBL CA759764 [ TGCTTT GCGTATTTGACCCCAAGATATCTGAGCAAACCACTTCCAGATTTAGCAAGGATTTCTACAGATGGTCTTGTTATC TTGCCGCGCAATCCAGGTCAACAGAAGGCTAAGGTTTCTGAACTACCAAAATTCGGAAGACCGGCAAAGTTGCGGAGTTCTTCGTGGTGGTCGCGATACTTTATCCAGACTGGCTTGAGAGAGAATGAAGGGCCATTGAAGAAGTTTGAGCAGGCTGCTTCCAAGAACAAATACAAACCAGACTGTCAAATCTTCCATCTTAGCTNGTAGGCGTGTTCTGACCTAGGTGATGTGTATCCATGAAACCTGGATCGTTGCCTCGCCGGTTTTGTAAGCAATAT CCTGTTTAC CCCC GTTGA CTTGCGCTTC TTTTACACGGA GGAATTGTCACATTAAGAG CCAGCCAGCCTT GAGCATA GGTA GC TTATG TA GAGA GATTTGCCACATGCTGCTAGAAAATTCTTCCTGGAAAGTTAAATTATGTGTTACCAAGAGG TGCAAATTGAAGCCCTGAGGATATATATGTAAGAACTTCACACTGTTGTACCCTGTTATTCTTCTTGGTGTTACAGTTATTCCTGGTGAACCAGCTGCAGTTCCGTGAGCAGTTTGTAATGTACTCAGTTCAAGAGAGAG AAAAAAAATATATATCTACCCTTTGTCTGCTAAAA ]
[+] EMBL D42871 [ TATCCAGACTGGCTTGAGAGAGAATGAAGGGCCATTGAAGAAGTTTGAGCAGGCTGCTTCCAAGAACAAATACAAACCAGACTGTCAAATCTTCCATCTTAGCTCGTAGGCGTGTTCTGATCTAGGTGATGTGTATCCATGAAACCTGGGTCGTTGCCTCGCCGGTTTTGTAAGCAATAT CCTGTTTAC CCCCGGTTGA CTTGCGCTTCTTTTTACACGGAGGGATTTGTCACATT AGAGCCCGGCCAGNCTTGGAGCATAGGGTAGGCTTTATGTTAGGAGAGGATT ]
[+] EMBL BI812491 [ GCTCGTAGGCGTGTTCTGATCTAGGTGATGTGTATCCATGAAACCTGGATCGTTGCCTCGCCGGTTTTGTAAGCAATAT CCTGTTTACACCCC GTTGA CTTGCGCTTC TTTTACACGGA GGAATTGTCACATTAAGAG CCAGCCAGCCTT GAGCATA GGTA GC TTATG TA GAGA GATTTGCCACATGCTGCTAGAAAATTCTTCCTGGAAAGTTAAATTATGTGTTACC AGAGGCTGC AATTGAAGCCCTGAGGATATATATGTAAGAACTTCACACTGTTGTACCCTGTTATTCTTCTTGGTGTTACAGTTATTCCTGGTGAACCAGCTGCAGTTCCGTGA CAGTTTGTAATGTACTCAGTTCAAGAGAGAGAAAAAAAAATATATATCTACCCTTTGTCTGCTAAAAAAA]
consensusID : consensus_10381#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 556 fasta sequence
[GAATCCGAGCCGGCGGGTGGCGGATGGGGGATTGCCGTCTGTCGGTGGCCTGCTTCACCCCAAGTCACGCTCGCCGCCCGTGCTCACCATCGCCCTCGTGGTCCTGGGTGTCATTATTCTGATCGCCTACTTCAATAGCGGCTCAGGTCAGCTTGAACTCCACTTGAATATTCTTCTTCACCTGTTTATTTTTGTTCCGTTTAGCTTGTATTGCAAAATGGTGAAAAAACCGTAGTGAGAGTAACTCATACTAATTCACTCTGTTCCCTTATTCTGTTGATTCTCTGCTTTCTATTAAAGAAAGGTAGTAGCAACTTAAATAATAGATTTGGAGGGTAGGGGTGGGCGTGCTAGATGCCATCACTGATTGTTGCTGTCACAATTAGTGCACAGTGACATTGCTGCAGCATTGTACCTGCATTTTCTTATTGGTACTGCATTGTTGCTGTCATGATTTTTCTGAAATATCAAAACAAAATCAACTTGGGATATTCAATTGTTAACTGAGATTGCCCTGTAGTATGAATATATTTTGTGATTTTTTAACGTTGAATTG]
[+] EMBL CF323812 [GAATCCGAGCCGGCGGGTGGCGGATGGGGGATTGCCGTCTGTCGGTGGCCTGCTTCACCCCAAGTCACGCTCGCCGCCCGTGCTCACCATCGCCCTCGTGGTCCTGGGTGTCATTATTCTGATCGCCTACTTCAATAGCGGCTCAGGTCAGCTTGAACTCCACTTGAATATTCTTCTTCACCTGTTTATTTTTGTTCCGTTTAGCTTGTATTGCAAAATGGTGAAAAAACCGTAGTGAGAGTAACTCATACTAATTCACTCTGTTCCCTTATTCTGTTGATTCTCTGCTTTCTATTAAAGAAAGGTAGTAGCAACTTAAATAATAGATTTGGAGGGTAGGGGTGGGCGTGCTAGATGCCATCACTGATTGTTGCTGTCACAATTAGTGCACAGTGACATTGCTGCAGCATTGTACCTGCATTTTCTTATTGGTACTGCATTGTTGCTGTCATGATTTTTCTGAAATATCAAAACAAAATCAACTTGGGATATTCAATTGTTAACTGAGATTGCCCTGTAGTATGAATATATTTTGTGATTTTTTAACGTTGAATTG]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_10381#0 TCCCCGAACCCTAGCCCCGCTCTCGGGGGTTCCCCCTCCTCCTCCGCCGCCCGCCGCGTC 60
consensus_10381#1 ------------------------------------------------------------
consensus_10381#0 CGCCACTTCCATCGGAGGTGATCGATCGAGCGGGGGTGGGGGGAGAGGTTGGGCGGCTTG 120
consensus_10381#1 ------------------------------------------------------------
consensus_10381#0 GATTGGAGAGGGCTCGGAGTGGATGTCGAGGAGGTCGGTGAATCCGAGCCGGCGGGTGGC 180
consensus_10381#1 ---------------------------------------GAATCCGAGCCGGCGGGTGGC 21
*********************
consensus_10381#0 GGATGGGGGATTGCCGTCTGTCGGTGGCCTGCTTCACCCCAAGTCACGCTCGCCGCCCGT 240
consensus_10381#1 GGATGGGGGATTGCCGTCTGTCGGTGGCCTGCTTCACCCCAAGTCACGCTCGCCGCCCGT 81
************************************************************
consensus_10381#0 GCTCACCATCGCC-TCGTGGTCCTGGGTGTCATTATTCTGATCGNCTACTTCAATAGCGG 299
consensus_10381#1 GCTCACCATCGCCCTCGTGGTCCTGGGTGTCATTATTCTGATCGCCTACTTCAATAGCGG 141
************* ****************************** ***************
consensus_10381#0 CTCAGGTGTAACAGTTACTAGCAGAGAAGCTGTGAGCAGGTCTNAAGGTTCTTGTACAAC 359
consensus_10381#1 CTCAGGT-CAGCTTGAACTCCACTTGAATATTCTTCTTCACCTGTTTATTTTTGTTCC-- 198
******* * * *** *** * ** ** **** *
consensus_10381#0 AGAAGTCATGCAAGCACTTCCTTATCTTAAAAAGGC-ATATTGCAATNAGTTTCATAAGG 418
consensus_10381#1 ----GTTTAGCTTGTATTGCAAAATGGTGAAAAAACCGTAGTGAGAGTAACTCATACTAA 254
** ** * * * * ** * **** * ** ** * * *
consensus_10381#0 TTCTCCATGTTGGCCCTGATAGTTGTACAGTAGTTTCTAACTTGTTGAAGGAAGGGAAGG 478
consensus_10381#1 TTCACTCTGTT--CCCTTAT-----TCTGTTGATTCTCTGCTTTCT--ATTAAAGAAAGG 305
*** * **** **** ** * * ** *** * * ** * ****
consensus_10381#0 TTGAAGCATGGGGAGTGGAGCCTTATGATTTGGAGGATACTGATAGTAGCTGCAAAAGCC 538
consensus_10381#1 TAGTAGCA-----ACTTAAATAATA-GATTTGGAGGGTAGGGGTGGGCGTGCTAGATGCC 359
* * **** * * * ** ********** ** * * * * * * ***
consensus_10381#0 TTGTGCGCAAGGGCTTTGTTCGTATGGCTG-ATATCAAGTTCCCTCTTCCATACCGCCAA 597
consensus_10381#1 AT-CACTGATTGTTGCTGTCACAATTAGTGCACAGTGACATTGCTGCAGCATTGTACCTG 418
* * * * *** ** ** * * * * ** *** **
consensus_10381#0 GATTCCTTTAACCTTGTTATCGTATCAGATGCTTTGGATTATTTGACCCCAAGATATCTG 657
consensus_10381#1 CATTTTCTTA---TTGGTACTGCATT-GTTGCTGTC-ATGATTT--TTCTGAAATATCAA 471
*** *** *** ** * ** * **** * ** **** * * *****
consensus_10381#0 AACAAAACACTTCCAGATTTAGCAAGGATTTCTACAGATGGTCTTGTTATCTTTGCCGGC 717
consensus_10381#1 AACAAAATCAACTTGGGATATTCAATTGTTAACTGAGATTGCCCTGTAGTAT--GAATAT 529
******* * * *** ** **** * * *** * * *
consensus_10381#0 AATCCAGGTCAACAGAAGGCTAAGGTTTCTGAACTACCAAAATTCGGAAGACCGGCAAAG 777
consensus_10381#1 ATTTTGTGATTTTTTAACGTTGAATTG--------------------------------- 556
* * * ** * * * *
consensus_10381#0 TTGCGGAGTTCTTCGTGGTGGTCGCGATACTTTATCCAGACTGGCTTGAGAGAGAATGAA 837
consensus_10381#1 ------------------------------------------------------------
consensus_10381#0 GGGCCATTGAAGAAGTTTGAGCAGGCTGCTTCCAAGAACAAATACAAACCAGACTGTCAA 897
consensus_10381#1 ------------------------------------------------------------
consensus_10381#0 ATCTTCCATCTTAGCTCGTAGGCGTGTTCTGATCTAGGTGATGTGTATCCATGAAACCTG 957
consensus_10381#1 ------------------------------------------------------------
consensus_10381#0 GATCGTTGCCTCGCCGGTTTTGTAAGCAATATCCTGTTTACCCCCGTTGACTTGCGCTTC 1017
consensus_10381#1 ------------------------------------------------------------
consensus_10381#0 TTTTACACGGAGGAATTGTCACATTAAGAGCCAGCCAGCCTTGAGCATAGGTAGCTTATG 1077
consensus_10381#1 ------------------------------------------------------------
consensus_10381#0 TAGAGAGATTTGCCACATGCTGCTAGAAAATTCTTCCTGGAAAGTTAAATTATGTGTTAC 1137
consensus_10381#1 ------------------------------------------------------------
consensus_10381#0 CAAGAGGTGCAAATTGAAGCCCTGAGGATATATATGTAAGAACTTCACACTGTTGTACCC 1197
consensus_10381#1 ------------------------------------------------------------
consensus_10381#0 TGTTATTCTTCTTGGTGTTACAGTTATTCCTGGTGAACCAGCTGCAGTTCCGTGAGCAGT 1257
consensus_10381#1 ------------------------------------------------------------
consensus_10381#0 TTGTAATGTACTCAGTTCAAGAGAGAGAAAAAAAATATATATCTACCCTTTGTCTGCTAA 1317
consensus_10381#1 ------------------------------------------------------------
consensus_10381#0 AAAAA 1322
consensus_10381#1 -----
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||