These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_10381#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 6 consensus length = 1322 fasta sequence [TCCCCGAACCCTAGCCCCGCTCTCGGGGGTTCCCCCTCCTCCTCCGCCGCCCGCCGCGTCCGCCACTTCCATCGGAGGTGATCGATCGAGCGGGGGTGGGGGGAGAGGTTGGGCGGCTTGGATTGGAGAGGGCTCGGAGTGGATGTCGAGGAGGTCGGTGAATCCGAGCCGGCGGGTGGCGGATGGGGGATTGCCGTCTGTCGGTGGCCTGCTTCACCCCAAGTCACGCTCGCCGCCCGTGCTCACCATCG-CCTCGTGGTCCTGGGTGTCATTATTCTGATCGNCTACTTCAATAGCGGCTCAGGTGTAACAGTTACTAGCAGAGAAGCTGTGAGCAGGTCTNAAGGTTCTTGTACAACAGAAGTCATGCAAGCACTTCCTTATCTTAAAAAGGCATATTGCAATNAGTTTCAT-AAGGTTCTCCATGTTGGCCCTGATAGTTGTACAGTAGTTTCTAACTTGTTGAAGGAAGGGAAGGTTGAAGCATGGGGAGTGGAGCCTTATGATTTGGAGGATACTGATAGTAGCTGCAAAAGCCTTGTGCGCAAGGGCTTTGTTCGTATGGCTGATATCAAGTTCCCTCTTCCATACCGCCAAGATTCCTTTAACCTTGTTATCGTATCAGATGCTTTGGATTATTTGACCCCAAGATATCTGAACAAAACACTTCCAGATTTAGCAAGGATTTCTACAGATGGTCTTGTTATCTTTGCCG-GCAATCCAGGTCAACAGAAGGCTAAGGTTTCTGAACTACCAAAATTCGGAAGACCGGCAAAGTTGCGGAGTTCTTCGTGGTGGTCGCGATACTTTATCCAGACTGGCTTGAGAGAGAATGAAGGGCCATTGAAGAAGTTTGAGCAGGCTGCTTCCAAGAACAAATACAAACCAGACTGTCAAATCTTCCATCTTAGCTCGTAGGCGTGTTCTGATCTAGGTGATGTGTATCCATGAAACCTGGATCGTTGCCTCGCCGGTTTTGTAAGCAATAT-CCTGTTTAC-CCCC-GTTGA-CTTGCGCTTC-TTTTACACGGA-GGAATTGTCACATTAAGAG-CCAGCCAGCCTT-GAGCATA-GGTA-GC-TTATG-TA-GAGA-GATTTGCCACATGCTGCTAGAAAATTCTTCCTGGAAAGTTAAATTATGTGTTACCAAGAGG-TGCAAATTGAAGCCCTGAGGATATATATGTAAGAACTTCACACTGTTGTACCCTGTTATTCTTCTTGGTGTTACAGTTATTCCTGGTGAACCAGCTGCAGTTCCGTGAGCAGTTTGTAATGTACTCAGTTCAAGAGAGAG-AAAAAAAATATATATCTACCCTTTGTCTGCTAAAAAAA] [+] EMBL C91712 [TCCCCGAACCCTAGCCCCGCTCTCGGGGGTTCCCCCTCCTCCTCCGCCGCCCGCCGCGTCCGCCACTTCCATCGGAGGTGATCGATCGAGCGGGGGTGGGGGGAGAGGTTGGGCGGCTTGGATTGGAGAGGGCTCGGAGTGGATGTCGAGGAGGTCGGTGAATCCGAGCCGGCGGGTGGCGGATGGGGGATTGCCGTCTGTCGGTGGCCTGCTTCACCCCAAGTCACGCTCGCCGCCCGTGCTCACCATCG CCTCGTGGTCCTGGGTGTCATTATTCTGATCGNCTACTTCAATAGCGGCTCAGGTGTAACAGTTACTAGCAGAGAAGCTGTGAGCAGGTCTNAAGGTTCTTGTACAACAGAAGTCATGCAAGCACTTCCTTATCTTAAAAAGGCATATTGCAATNAGTTTCATAAAGGTTCTCCATGTTNGCCCTGATAGT ] [+] EMBL AK101834 [ CACTTCCATCGGAGGTGATCGATCGAGCGGGGGTGGGGGGAGAGGTTGGGCGGCTTGGATTGGAGAGGGCTCGGAGTGGATGTCGAGGAGGTCGGTGAATCCGAGCCGGCGGGTGGCGGATGGGGGATTGCCGTCTGTCGGTGGCCTGCTTCACCCCAAGTCACGCTCGCCGCCCGTGCTCACCATCGCCCTCGTGGTCCTGGGTGTCATTATTCTGATCGCCTACTTCAATAGCGGCTCAGGTGTAACAGTTACTAGCAGAGAAGCTGTGAGCAGGTCTGAAGGTTCTTGTACACCAGAAGTCATGCAAGCACTTCCTTATCTTAAAAAGGCATATGGCAATGAGTTGCAT AAGGTTCTCCATGTTGGCCCTGATAGTTGTACAGTAGTTTCTAACTTGTTGAAGGAAGGGAAGGTTGAAGCATGGGGAGTGGAGCCTTATGATTTGGAGGATACTGATAGTAGCTGCAAAAGCCTTGTGCGCAAGGGCTTTGTTCGTATGGCTGATATCAAGTTCCCTCTTCCATACCGCCAAGATTCCTTTAACCTTGTTATCGTATCAGATGCTTTGGATTATTTGACCCCAAGATATCTGAACAAAACACTTCCAGATTTAGCAAGGATTTCTACAGATGGTCTTGTTATCTTTGCCG GCAATCCAGGTCAACAGAAGGCTAAGGTTTCTGAACTACCAAAATTCGGAAGACCGGCAAAGTTGCGGAGTTCTTCGTGGTGGTCGCGATACTTTATCCAGACTGGCTTGAGAGAGAATGAAGGGCCATTGAAGAAGTTTGAGCAGGCTGCTTCCAAGAACAAATACAAACCAGACTGTCAAATCTTCCATCTTAGCTCGTAGGCGTGTTCTGATCTAGGTGATGTGTATCCATGAAACCTGGATCGTTGCCTCGCCGGTTTTGTAAGCAATAT CCTGTTTAC CCCC GTTGA CTTGCGCTTC TTTTACACGGA GGAATTGTCACATTAAGAG CCAGCCAGCCTT GAGCATA GGTA GC TTATG TA GAGA GATTTGCCACATGCTGCTAGAAAATTCTTCCTGGAAAGTTAAATTATGTGTTACCAAGAGG TGCAAATTGAAGCCCTGAGGATATATATGTAAGAACTTCACACTGTTGTACCCTGTTATTCTTCTTGGTGTTACAGTTATTCCTGGTGAACCAGCTGCAGTTCCGTGAGCAGTTTGTAATGTACTCAGTTCAAGAGAGAG AGAAAAA ] [+] EMBL CA767261 [ TGTTGGCCCTGATAGTTGTACAGTAGTTTCTAACTTGTTGAAGGAAGGGAAGGTTGAAGCATGGGGAGTGGAGCCTTATGATTTGGAGGATACTGATAGTAGCTGCAAAAGCCTTGTGCGCAAGGGCTTTGTTCGTATGGCTGATATCAAGTTCCCTCTTCCATACCGCCAAGATTCCTTTAACCTTGTTATCGTATCAGATGCTTTGGATTATTTGACCCCAAGATATCTGAACAAAACACTTCCAGATTTAGCAAGGATTTCTACAGATGGTCTTGTTATCTTTGCCG GCAATCCAGGTCAACAGAAGGCTAAGGTTTCTGAACTACCAAAATTCGGAAGACCGGCAAAGTTGCGGAGTTCTTCGTGGTGGTCGCGATACTTTATCCAGACTGGCTTGAGAGAGAATGAAGGGCCATTGAAGAAGTTTGAGCAGGCTGCTTCCAAGAACAAATACAAACCAGACTGTCAAATCTTCCATCTTAGCTCGTANGCGTGNTCTGATCTAGGCGATGTGTATCCATGAAACCTGNATCGTTGCCTCGCCGNTTTTGTAAGCAATATCCCTGTTTAC CCCC GTTGANCTTGCGCTTN TTTTA ] [-] EMBL CA759764 [ TGCTTT GCGTATTTGACCCCAAGATATCTGAGCAAACCACTTCCAGATTTAGCAAGGATTTCTACAGATGGTCTTGTTATC TTGCCGCGCAATCCAGGTCAACAGAAGGCTAAGGTTTCTGAACTACCAAAATTCGGAAGACCGGCAAAGTTGCGGAGTTCTTCGTGGTGGTCGCGATACTTTATCCAGACTGGCTTGAGAGAGAATGAAGGGCCATTGAAGAAGTTTGAGCAGGCTGCTTCCAAGAACAAATACAAACCAGACTGTCAAATCTTCCATCTTAGCTNGTAGGCGTGTTCTGACCTAGGTGATGTGTATCCATGAAACCTGGATCGTTGCCTCGCCGGTTTTGTAAGCAATAT CCTGTTTAC CCCC GTTGA CTTGCGCTTC TTTTACACGGA GGAATTGTCACATTAAGAG CCAGCCAGCCTT GAGCATA GGTA GC TTATG TA GAGA GATTTGCCACATGCTGCTAGAAAATTCTTCCTGGAAAGTTAAATTATGTGTTACCAAGAGG TGCAAATTGAAGCCCTGAGGATATATATGTAAGAACTTCACACTGTTGTACCCTGTTATTCTTCTTGGTGTTACAGTTATTCCTGGTGAACCAGCTGCAGTTCCGTGAGCAGTTTGTAATGTACTCAGTTCAAGAGAGAG AAAAAAAATATATATCTACCCTTTGTCTGCTAAAA ] [+] EMBL D42871 [ TATCCAGACTGGCTTGAGAGAGAATGAAGGGCCATTGAAGAAGTTTGAGCAGGCTGCTTCCAAGAACAAATACAAACCAGACTGTCAAATCTTCCATCTTAGCTCGTAGGCGTGTTCTGATCTAGGTGATGTGTATCCATGAAACCTGGGTCGTTGCCTCGCCGGTTTTGTAAGCAATAT CCTGTTTAC CCCCGGTTGA CTTGCGCTTCTTTTTACACGGAGGGATTTGTCACATT AGAGCCCGGCCAGNCTTGGAGCATAGGGTAGGCTTTATGTTAGGAGAGGATT ] [+] EMBL BI812491 [ GCTCGTAGGCGTGTTCTGATCTAGGTGATGTGTATCCATGAAACCTGGATCGTTGCCTCGCCGGTTTTGTAAGCAATAT CCTGTTTACACCCC GTTGA CTTGCGCTTC TTTTACACGGA GGAATTGTCACATTAAGAG CCAGCCAGCCTT GAGCATA GGTA GC TTATG TA GAGA GATTTGCCACATGCTGCTAGAAAATTCTTCCTGGAAAGTTAAATTATGTGTTACC AGAGGCTGC AATTGAAGCCCTGAGGATATATATGTAAGAACTTCACACTGTTGTACCCTGTTATTCTTCTTGGTGTTACAGTTATTCCTGGTGAACCAGCTGCAGTTCCGTGA CAGTTTGTAATGTACTCAGTTCAAGAGAGAGAAAAAAAAATATATATCTACCCTTTGTCTGCTAAAAAAA] consensusID : consensus_10381#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 556 fasta sequence [GAATCCGAGCCGGCGGGTGGCGGATGGGGGATTGCCGTCTGTCGGTGGCCTGCTTCACCCCAAGTCACGCTCGCCGCCCGTGCTCACCATCGCCCTCGTGGTCCTGGGTGTCATTATTCTGATCGCCTACTTCAATAGCGGCTCAGGTCAGCTTGAACTCCACTTGAATATTCTTCTTCACCTGTTTATTTTTGTTCCGTTTAGCTTGTATTGCAAAATGGTGAAAAAACCGTAGTGAGAGTAACTCATACTAATTCACTCTGTTCCCTTATTCTGTTGATTCTCTGCTTTCTATTAAAGAAAGGTAGTAGCAACTTAAATAATAGATTTGGAGGGTAGGGGTGGGCGTGCTAGATGCCATCACTGATTGTTGCTGTCACAATTAGTGCACAGTGACATTGCTGCAGCATTGTACCTGCATTTTCTTATTGGTACTGCATTGTTGCTGTCATGATTTTTCTGAAATATCAAAACAAAATCAACTTGGGATATTCAATTGTTAACTGAGATTGCCCTGTAGTATGAATATATTTTGTGATTTTTTAACGTTGAATTG] [+] EMBL CF323812 [GAATCCGAGCCGGCGGGTGGCGGATGGGGGATTGCCGTCTGTCGGTGGCCTGCTTCACCCCAAGTCACGCTCGCCGCCCGTGCTCACCATCGCCCTCGTGGTCCTGGGTGTCATTATTCTGATCGCCTACTTCAATAGCGGCTCAGGTCAGCTTGAACTCCACTTGAATATTCTTCTTCACCTGTTTATTTTTGTTCCGTTTAGCTTGTATTGCAAAATGGTGAAAAAACCGTAGTGAGAGTAACTCATACTAATTCACTCTGTTCCCTTATTCTGTTGATTCTCTGCTTTCTATTAAAGAAAGGTAGTAGCAACTTAAATAATAGATTTGGAGGGTAGGGGTGGGCGTGCTAGATGCCATCACTGATTGTTGCTGTCACAATTAGTGCACAGTGACATTGCTGCAGCATTGTACCTGCATTTTCTTATTGGTACTGCATTGTTGCTGTCATGATTTTTCTGAAATATCAAAACAAAATCAACTTGGGATATTCAATTGTTAACTGAGATTGCCCTGTAGTATGAATATATTTTGTGATTTTTTAACGTTGAATTG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_10381#0 TCCCCGAACCCTAGCCCCGCTCTCGGGGGTTCCCCCTCCTCCTCCGCCGCCCGCCGCGTC 60 consensus_10381#1 ------------------------------------------------------------ consensus_10381#0 CGCCACTTCCATCGGAGGTGATCGATCGAGCGGGGGTGGGGGGAGAGGTTGGGCGGCTTG 120 consensus_10381#1 ------------------------------------------------------------ consensus_10381#0 GATTGGAGAGGGCTCGGAGTGGATGTCGAGGAGGTCGGTGAATCCGAGCCGGCGGGTGGC 180 consensus_10381#1 ---------------------------------------GAATCCGAGCCGGCGGGTGGC 21 ********************* consensus_10381#0 GGATGGGGGATTGCCGTCTGTCGGTGGCCTGCTTCACCCCAAGTCACGCTCGCCGCCCGT 240 consensus_10381#1 GGATGGGGGATTGCCGTCTGTCGGTGGCCTGCTTCACCCCAAGTCACGCTCGCCGCCCGT 81 ************************************************************ consensus_10381#0 GCTCACCATCGCC-TCGTGGTCCTGGGTGTCATTATTCTGATCGNCTACTTCAATAGCGG 299 consensus_10381#1 GCTCACCATCGCCCTCGTGGTCCTGGGTGTCATTATTCTGATCGCCTACTTCAATAGCGG 141 ************* ****************************** *************** consensus_10381#0 CTCAGGTGTAACAGTTACTAGCAGAGAAGCTGTGAGCAGGTCTNAAGGTTCTTGTACAAC 359 consensus_10381#1 CTCAGGT-CAGCTTGAACTCCACTTGAATATTCTTCTTCACCTGTTTATTTTTGTTCC-- 198 ******* * * *** *** * ** ** **** * consensus_10381#0 AGAAGTCATGCAAGCACTTCCTTATCTTAAAAAGGC-ATATTGCAATNAGTTTCATAAGG 418 consensus_10381#1 ----GTTTAGCTTGTATTGCAAAATGGTGAAAAAACCGTAGTGAGAGTAACTCATACTAA 254 ** ** * * * * ** * **** * ** ** * * * consensus_10381#0 TTCTCCATGTTGGCCCTGATAGTTGTACAGTAGTTTCTAACTTGTTGAAGGAAGGGAAGG 478 consensus_10381#1 TTCACTCTGTT--CCCTTAT-----TCTGTTGATTCTCTGCTTTCT--ATTAAAGAAAGG 305 *** * **** **** ** * * ** *** * * ** * **** consensus_10381#0 TTGAAGCATGGGGAGTGGAGCCTTATGATTTGGAGGATACTGATAGTAGCTGCAAAAGCC 538 consensus_10381#1 TAGTAGCA-----ACTTAAATAATA-GATTTGGAGGGTAGGGGTGGGCGTGCTAGATGCC 359 * * **** * * * ** ********** ** * * * * * * *** consensus_10381#0 TTGTGCGCAAGGGCTTTGTTCGTATGGCTG-ATATCAAGTTCCCTCTTCCATACCGCCAA 597 consensus_10381#1 AT-CACTGATTGTTGCTGTCACAATTAGTGCACAGTGACATTGCTGCAGCATTGTACCTG 418 * * * * *** ** ** * * * * ** *** ** consensus_10381#0 GATTCCTTTAACCTTGTTATCGTATCAGATGCTTTGGATTATTTGACCCCAAGATATCTG 657 consensus_10381#1 CATTTTCTTA---TTGGTACTGCATT-GTTGCTGTC-ATGATTT--TTCTGAAATATCAA 471 *** *** *** ** * ** * **** * ** **** * * ***** consensus_10381#0 AACAAAACACTTCCAGATTTAGCAAGGATTTCTACAGATGGTCTTGTTATCTTTGCCGGC 717 consensus_10381#1 AACAAAATCAACTTGGGATATTCAATTGTTAACTGAGATTGCCCTGTAGTAT--GAATAT 529 ******* * * *** ** **** * * *** * * * consensus_10381#0 AATCCAGGTCAACAGAAGGCTAAGGTTTCTGAACTACCAAAATTCGGAAGACCGGCAAAG 777 consensus_10381#1 ATTTTGTGATTTTTTAACGTTGAATTG--------------------------------- 556 * * * ** * * * * consensus_10381#0 TTGCGGAGTTCTTCGTGGTGGTCGCGATACTTTATCCAGACTGGCTTGAGAGAGAATGAA 837 consensus_10381#1 ------------------------------------------------------------ consensus_10381#0 GGGCCATTGAAGAAGTTTGAGCAGGCTGCTTCCAAGAACAAATACAAACCAGACTGTCAA 897 consensus_10381#1 ------------------------------------------------------------ consensus_10381#0 ATCTTCCATCTTAGCTCGTAGGCGTGTTCTGATCTAGGTGATGTGTATCCATGAAACCTG 957 consensus_10381#1 ------------------------------------------------------------ consensus_10381#0 GATCGTTGCCTCGCCGGTTTTGTAAGCAATATCCTGTTTACCCCCGTTGACTTGCGCTTC 1017 consensus_10381#1 ------------------------------------------------------------ consensus_10381#0 TTTTACACGGAGGAATTGTCACATTAAGAGCCAGCCAGCCTTGAGCATAGGTAGCTTATG 1077 consensus_10381#1 ------------------------------------------------------------ consensus_10381#0 TAGAGAGATTTGCCACATGCTGCTAGAAAATTCTTCCTGGAAAGTTAAATTATGTGTTAC 1137 consensus_10381#1 ------------------------------------------------------------ consensus_10381#0 CAAGAGGTGCAAATTGAAGCCCTGAGGATATATATGTAAGAACTTCACACTGTTGTACCC 1197 consensus_10381#1 ------------------------------------------------------------ consensus_10381#0 TGTTATTCTTCTTGGTGTTACAGTTATTCCTGGTGAACCAGCTGCAGTTCCGTGAGCAGT 1257 consensus_10381#1 ------------------------------------------------------------ consensus_10381#0 TTGTAATGTACTCAGTTCAAGAGAGAGAAAAAAAATATATATCTACCCTTTGTCTGCTAA 1317 consensus_10381#1 ------------------------------------------------------------ consensus_10381#0 AAAAA 1322 consensus_10381#1 ----- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||