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Oryza sativa
cluster # 10389 cluster # 10389       Sequences # 7       consensus # 3


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_10389#0 length = 2102 sequences # 1  
consensus_10389#1 length = 1231 sequences # 5  
consensus_10389#2 length = 286 sequences # 1  

consensusID : consensus_10389#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 2102
fasta sequence
                              [GGAGAGAGGAGAAGGGAAGGGAGGAGAGGCGAATGAGCGAGGAGGCGGCGGCGGCGGCGGCGGCGGCGGGAGCGGCGGGAGTGGAGGAGTCGTTAGGGAGGCGGAGGAGTAGGAGGGGCGGTGGTGGTGATGGGGTGGGGATGGGGGCGGCGGCGGCGGCGAGGGTGTGGGAGTTCGAGCGGGATCTGGTGGCCGGGGCGGCGATGGGCGGCGCCGTGCACACGGTGGTGGCGCCGATCGAGCGCGCCAAGCTGCTGCTCCAGACGCAGGACGGCAACGCGGCGCTGCTGGGCCGCGCGCGCAGGTTCCGCGGGTTCGCCGACTGCGTGGCGCGCACCGTCCGCGACGAGGGCGTGCTCTCCCTCTGGCGCGGCAACGGCACCGCCGTCATCCGGTACTACCCCTCCGTCGCCCTCAACTTCTCCCTCAAGGTTCCCACCCCCACCCCGAAACCCCCCCGCCATTTTTGTTCTTACTGTTTGTTTGTTCCTTGTTGTCCGAGTTATCGATTCGTACGTTACAACCGCATCAATATTGCTTCGGTTTGAGATAACAGTGCCAGTGCGATCTTGTGGGTGTTTTGGTGCGGCGGATTTGGGGTTCATGGTTCCATTCCTTGCTTGATCGGTTCGTATGCTTTAGTGTGTGATTCGATGAGCACAGGAATTGTGGTGATGTCGGTAACTTCTTGGTTTGGGGAAGCATCTGGTACTGGTTCTACAGCGTGCGGTGTAAATTCTTGAGGATGAGAGATTGTATTAGGTCATTAGATTCTGCTGGGATTTCACTTTCGGGGGAGAAATGTTTGCGGACGGAAATAGAAAAGGAATCAAAGAATAAAGTGCTCTCGAGTCTTATGAAAGAGCACTATAGACTAGCACTCATGAACACTAAATGGCATCTTGATGCACATATTCTCACAACATTTGTCGTACTTGTTAGTCATTGTTTCCAATAGCAGCAATGCCAGTTAGCATGTAAACCTTTTTGTTCTCTATTGAGGATCTAGGAGATAGGAACAGTACTGTACATCGATATAAATTTCATGATTGGTTCATTTGAATGGTACTCCAATTGTACCACACTAGCATCTTGCTAGTTATTGCCATTATGTGGTGGTATCTTGTGAACTGATCCGTAATGAACATTTGATTCCAACAACAGTGATGTAACTACTAAATTAGTAAGAAGGCATTATGTGGACTTGCTCATGCGTTAAGGACTGTCATTGTTGTCATGGTGTTCGATGCAACATATGTTGTTATTAATGTGTGATGAAATAATCATATATAGTTACTGATTACAAAAGATGTACAAAAAGATCTGATGCCAAATATGAGAAACTTAGAAAAGCTTTTGGGCAAGATGACAGCCATTCTCTAAAATAACAAATGGCAAAGCGACATTGCTAAATGGATATTTGAGTTGCACCTTTTTAAGCAGCTGTAGGACTGTAGGAGTTGCAGGCACTTCCTGCCATAGTCAAATAGCATGACCATGATCAAATCCCTTGATATATAGTCATATTATAACTCAAGAAACAAATAGATTGCATCTACTGCCAGCTACTATAAGAGAAATATACATTGTACGGCAATATAGAACATAACAGTGATAACTATTTGAAGATGGCCAATTAATTATCGTGTTTTTGCCTCTGCTGATTTTCGTGATACTATTTGAAGCCAGGTTGCCCTGTGACTTGTACCGAATGCATCTGAGCTTATCTAAATTGCAGCAGGGTACTGCTTTGCCTTTACTCACTTTTACCAAATTATTCTTGAAGATTTATGTTGTGGATTATGGCCCATGCAACATATGTTTGGTTAATGTTAACATCTCTTCAGATGTGTCGATTTGACTTGATGATTTCCACTCACACTTAGCTATGTTTCCTTGATGCTCAATTATGTTGAAACAAGAATTGCTCATCTTAGTGGCGAAAGACATCGAATGTATGATAAGTTGATAAACCATAATGGTATAACAGATAATAACCGATGAGCAACTATGCACTACTTTACAACAGAGGTATCTAAAATATCTTATTGTAGAATAAGAGTTTTGTAAGAAAGCAATTATGGAAGTACGAACAATGAAAA]

[+] EMBL AK066441             [GGAGAGAGGAGAAGGGAAGGGAGGAGAGGCGAATGAGCGAGGAGGCGGCGGCGGCGGCGGCGGCGGCGGGAGCGGCGGGAGTGGAGGAGTCGTTAGGGAGGCGGAGGAGTAGGAGGGGCGGTGGTGGTGATGGGGTGGGGATGGGGGCGGCGGCGGCGGCGAGGGTGTGGGAGTTCGAGCGGGATCTGGTGGCCGGGGCGGCGATGGGCGGCGCCGTGCACACGGTGGTGGCGCCGATCGAGCGCGCCAAGCTGCTGCTCCAGACGCAGGACGGCAACGCGGCGCTGCTGGGCCGCGCGCGCAGGTTCCGCGGGTTCGCCGACTGCGTGGCGCGCACCGTCCGCGACGAGGGCGTGCTCTCCCTCTGGCGCGGCAACGGCACCGCCGTCATCCGGTACTACCCCTCCGTCGCCCTCAACTTCTCCCTCAAGGTTCCCACCCCCACCCCGAAACCCCCCCGCCATTTTTGTTCTTACTGTTTGTTTGTTCCTTGTTGTCCGAGTTATCGATTCGTACGTTACAACCGCATCAATATTGCTTCGGTTTGAGATAACAGTGCCAGTGCGATCTTGTGGGTGTTTTGGTGCGGCGGATTTGGGGTTCATGGTTCCATTCCTTGCTTGATCGGTTCGTATGCTTTAGTGTGTGATTCGATGAGCACAGGAATTGTGGTGATGTCGGTAACTTCTTGGTTTGGGGAAGCATCTGGTACTGGTTCTACAGCGTGCGGTGTAAATTCTTGAGGATGAGAGATTGTATTAGGTCATTAGATTCTGCTGGGATTTCACTTTCGGGGGAGAAATGTTTGCGGACGGAAATAGAAAAGGAATCAAAGAATAAAGTGCTCTCGAGTCTTATGAAAGAGCACTATAGACTAGCACTCATGAACACTAAATGGCATCTTGATGCACATATTCTCACAACATTTGTCGTACTTGTTAGTCATTGTTTCCAATAGCAGCAATGCCAGTTAGCATGTAAACCTTTTTGTTCTCTATTGAGGATCTAGGAGATAGGAACAGTACTGTACATCGATATAAATTTCATGATTGGTTCATTTGAATGGTACTCCAATTGTACCACACTAGCATCTTGCTAGTTATTGCCATTATGTGGTGGTATCTTGTGAACTGATCCGTAATGAACATTTGATTCCAACAACAGTGATGTAACTACTAAATTAGTAAGAAGGCATTATGTGGACTTGCTCATGCGTTAAGGACTGTCATTGTTGTCATGGTGTTCGATGCAACATATGTTGTTATTAATGTGTGATGAAATAATCATATATAGTTACTGATTACAAAAGATGTACAAAAAGATCTGATGCCAAATATGAGAAACTTAGAAAAGCTTTTGGGCAAGATGACAGCCATTCTCTAAAATAACAAATGGCAAAGCGACATTGCTAAATGGATATTTGAGTTGCACCTTTTTAAGCAGCTGTAGGACTGTAGGAGTTGCAGGCACTTCCTGCCATAGTCAAATAGCATGACCATGATCAAATCCCTTGATATATAGTCATATTATAACTCAAGAAACAAATAGATTGCATCTACTGCCAGCTACTATAAGAGAAATATACATTGTACGGCAATATAGAACATAACAGTGATAACTATTTGAAGATGGCCAATTAATTATCGTGTTTTTGCCTCTGCTGATTTTCGTGATACTATTTGAAGCCAGGTTGCCCTGTGACTTGTACCGAATGCATCTGAGCTTATCTAAATTGCAGCAGGGTACTGCTTTGCCTTTACTCACTTTTACCAAATTATTCTTGAAGATTTATGTTGTGGATTATGGCCCATGCAACATATGTTTGGTTAATGTTAACATCTCTTCAGATGTGTCGATTTGACTTGATGATTTCCACTCACACTTAGCTATGTTTCCTTGATGCTCAATTATGTTGAAACAAGAATTGCTCATCTTAGTGGCGAAAGACATCGAATGTATGATAAGTTGATAAACCATAATGGTATAACAGATAATAACCGATGAGCAACTATGCACTACTTTACAACAGAGGTATCTAAAATATCTTATTGTAGAATAAGAGTTTTGTAAGAAAGCAATTATGGAAGTACGAACAATGAAAA]


>consensus_10389#0 GGAGAGAGGAGAAGGGAAGGGAGGAGAGGCGAATGAGCGAGGAGGCGGCGGCGGCGGCGG CGGCGGCGGGAGCGGCGGGAGTGGAGGAGTCGTTAGGGAGGCGGAGGAGTAGGAGGGGCG GTGGTGGTGATGGGGTGGGGATGGGGGCGGCGGCGGCGGCGAGGGTGTGGGAGTTCGAGC GGGATCTGGTGGCCGGGGCGGCGATGGGCGGCGCCGTGCACACGGTGGTGGCGCCGATCG AGCGCGCCAAGCTGCTGCTCCAGACGCAGGACGGCAACGCGGCGCTGCTGGGCCGCGCGC GCAGGTTCCGCGGGTTCGCCGACTGCGTGGCGCGCACCGTCCGCGACGAGGGCGTGCTCT CCCTCTGGCGCGGCAACGGCACCGCCGTCATCCGGTACTACCCCTCCGTCGCCCTCAACT TCTCCCTCAAGGTTCCCACCCCCACCCCGAAACCCCCCCGCCATTTTTGTTCTTACTGTT TGTTTGTTCCTTGTTGTCCGAGTTATCGATTCGTACGTTACAACCGCATCAATATTGCTT CGGTTTGAGATAACAGTGCCAGTGCGATCTTGTGGGTGTTTTGGTGCGGCGGATTTGGGG TTCATGGTTCCATTCCTTGCTTGATCGGTTCGTATGCTTTAGTGTGTGATTCGATGAGCA CAGGAATTGTGGTGATGTCGGTAACTTCTTGGTTTGGGGAAGCATCTGGTACTGGTTCTA CAGCGTGCGGTGTAAATTCTTGAGGATGAGAGATTGTATTAGGTCATTAGATTCTGCTGG GATTTCACTTTCGGGGGAGAAATGTTTGCGGACGGAAATAGAAAAGGAATCAAAGAATAA AGTGCTCTCGAGTCTTATGAAAGAGCACTATAGACTAGCACTCATGAACACTAAATGGCA TCTTGATGCACATATTCTCACAACATTTGTCGTACTTGTTAGTCATTGTTTCCAATAGCA GCAATGCCAGTTAGCATGTAAACCTTTTTGTTCTCTATTGAGGATCTAGGAGATAGGAAC AGTACTGTACATCGATATAAATTTCATGATTGGTTCATTTGAATGGTACTCCAATTGTAC CACACTAGCATCTTGCTAGTTATTGCCATTATGTGGTGGTATCTTGTGAACTGATCCGTA ATGAACATTTGATTCCAACAACAGTGATGTAACTACTAAATTAGTAAGAAGGCATTATGT GGACTTGCTCATGCGTTAAGGACTGTCATTGTTGTCATGGTGTTCGATGCAACATATGTT GTTATTAATGTGTGATGAAATAATCATATATAGTTACTGATTACAAAAGATGTACAAAAA GATCTGATGCCAAATATGAGAAACTTAGAAAAGCTTTTGGGCAAGATGACAGCCATTCTC TAAAATAACAAATGGCAAAGCGACATTGCTAAATGGATATTTGAGTTGCACCTTTTTAAG CAGCTGTAGGACTGTAGGAGTTGCAGGCACTTCCTGCCATAGTCAAATAGCATGACCATG ATCAAATCCCTTGATATATAGTCATATTATAACTCAAGAAACAAATAGATTGCATCTACT GCCAGCTACTATAAGAGAAATATACATTGTACGGCAATATAGAACATAACAGTGATAACT ATTTGAAGATGGCCAATTAATTATCGTGTTTTTGCCTCTGCTGATTTTCGTGATACTATT TGAAGCCAGGTTGCCCTGTGACTTGTACCGAATGCATCTGAGCTTATCTAAATTGCAGCA GGGTACTGCTTTGCCTTTACTCACTTTTACCAAATTATTCTTGAAGATTTATGTTGTGGA TTATGGCCCATGCAACATATGTTTGGTTAATGTTAACATCTCTTCAGATGTGTCGATTTG ACTTGATGATTTCCACTCACACTTAGCTATGTTTCCTTGATGCTCAATTATGTTGAAACA AGAATTGCTCATCTTAGTGGCGAAAGACATCGAATGTATGATAAGTTGATAAACCATAAT GGTATAACAGATAATAACCGATGAGCAACTATGCACTACTTTACAACAGAGGTATCTAAA ATATCTTATTGTAGAATAAGAGTTTTGTAAGAAAGCAATTATGGAAGTACGAACAATGAA AA



consensusID : consensus_10389#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 5
consensus length = 1231
fasta sequence
                              [GCAACGCGGCGCTGCTGGGCCGCGCGCGCAGGTTCCGCGGGTTCGCCGACTGCGTGGCGCGCACCGTCCGCGACGAGGGCGTGCTCTCCCTCTGGCGCGGCAACGGCACCGCCGTCATCCGGTACTACCCCTCCGTCGCCCTCAACTTCTCCCTCAAGGATCTGTACAGGAGCATACTGAAAGATGCAGGAACCTCAGCTGATAACAAGTTCTCTTCTATTGCTTTAACCAACTTCATTGCTGGTGCTGCGGCTGGATGTACTACTCTGGTCCTCATTTATCCACTTGATATTGCTCATACCCGTCTTGCAGCTGATATTGGCCGGACCGATACTCGCCAGTTCAGAGGCATTTGCCACTTCGTTCAAACCATCTACAATAAAAACGGCATCCGGGGTATCTACAGAGGATTGCCAGCATCACTACAAGGGATGGTCGTTCACCGGGGCTTATACTTTGGAGGCTTTGACACCGCCAAGGATGTGATGGTACCACTAGACTCGCCCCTGTGGCAGCGCTGGGTGACAGCACAGGCAGTCACTTCCATGGCGGGGCTCATCTCGTACCCGCTGGATACCGTGCGAAGGAGGATGATGATGCAATCAGGGATGGATGTGCAGATGTACAGCAGCACCCTTGATTGCTGGAGGAAGATCTACAAGGTGGAGGGGATCAAGTCGTTCTACCGCGGAGCACTTTCTAACATGTTTAGGAGCACTGGCGCTGCCGCCATACTTGTTTTGTATGATGAAGTTAAGAAGTTTATGGACAGGGGTAGGTTATGACTTACGACACGTATAGAGGGTTTGGTTCAGGTTCTCCACAGATTTTTGGATTCAGTATGGAGATTAGACCGCCAAAGGTACAGGGAGCAGCAAGCTCGAGCATTTTGTAATAGAGTTGTAGTACTGGATTCCTCCAGGTCACTAACCCAGCTCGATGTAACTGGCGTTCTTCATGGTCTGAAGATGGTAGCTCTTGTTTGTTCATTTGGTTTGAAGGCAGAGCTTTGCTTCTTGTGTTATTGTCATTGGTTGTATGCCAGCCTACACGTGTGACTCAAAAGTTCACTCTTCAGAGTTCAAACGGTAGTTTCACGGCGAATTTCGGTCAATTTCTGCGTGGCAGTCGAACAAAATTGTCTTGTCAAGAAATCGCTTATGAGCACGCAGACAAGGCACTTGCGAGATTACTTTACTCAAGCCTCGGTTGAATTGCAAAACTAAAAAGA]

[+] EMBL CF324324             [GCAACGCGGCGCTGCTGGGCCGCGCGCGCAGGTTCCGCGGGTTCGCCGACTGCGTGGCGCGCACCGTCCGCGACGAGGGCGTGCTCTCCCTCTGGCGCGGCAACGGCACCGCCGTCATCCGGTACTACCCCTCCGTCGCCCTCAACTTCTCCCTCAAGGATCTGTACAGGAGCATACTGAAAGATGCAGGAACCTCAGCTGATAACAAGTTCTCTTCTATTGCTTTAACCAACTTCATTGCTGGTGCTGCGGCTGGATGTACTACTCTGGTCCTCATTTATCCACTTGATATTGCTCATACCCGTCTTGCAGCTGATATTGGCCGGACCGATACTCGCCAGTTCAGAGGCATTTGCCACTTCGTTCAAACCATCTACAATAAAAACGGCATCCGGGGTATCTACAGAGGATTGCCAGCATCACTACAAGGGATGGTCGTTCACCGGGGCTTA                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                           ]
[+] EMBL CB665330             [                                                                                                                                                                     ACAGGAGCATACTGAAAGATGCAGGAACCTCAGCTGATAACAAGTTCTCTTCTATTGCTTTAACCAACTTCATTGCTGGTGCTGCGGCTGGATGTACTACTCTGGTCCTCATTTATCCACTTGATATTGCTCATACCCGTCTTGCAGCTGATATTGGCCGGACCGATACTCGCCAGTTCAGAGGCATTTGCCACTTCGTTCAAACCATCTACAATAAAAACGGCATCCGGGGTATCTACAGAGGATTGCCAGCATCACTACAAGGGATGGTCGTTCACCGGGGCTTATACTTTGGAGGCTTTGACACCGCCAAGGATGTGATGGTACCACTAGACTCGCCCCTGTGGCAGCGCTGGGTGACAGCACAGGCAGTCACTTCCATGGCGGGGCTCATCTCGTACCCGCTGGATACCGTGCGAAGGAGGATGATGATGCAATCAGGGATGGATGTGCAGATGTACAGCAGCACCCTTGATTGCTGGAGGAAGATCTACAAGGTGGAGGGGATCAAGTCGTTCTACCGCGGAGCACTTTCTAACATGTTTAGGAGCACTGGCGCTGCCGCCATACTTGTTTTGTATGATGAAGTTAAGAAGTTTATGGACAGGGGTAGGTTATGACTTACGACACGTATAGAGGGTTTGGTTCAGGTTCTCCACAGATTTTTGGATTCAGTATGGAGATTAGACCGCCAAAGGTACAGGGAGCAGCAAGCTCGAGCATTTTGTAATAGAGTTGTAGTACTGGATTCCTCCAGGTCACTAACCCAGCTCGATGTAACTGGCGTTCTTCATGGTCTGAAGATGGTAGCTCTTGTTTGTTCATTTGGTTTG AGGCA                                                                                                                                                                                                                                   ]
[+] EMBL CA999266             [                                                                                                                                                                                                                                              TGCTGGTGCTGCGGCTGGATGTACTACTCTGGTCCTCATTTATCCACTTGATATTGCTCATACCCGTCTTGCAGCTGATATTGGCCGGACCGATACTCGCCAGTTCAGAGGCATTTGCCACTTCGTTCAAACCATCTACAATAAAAACGGCATCCGGGGTATCTACAGAGGATTGCCAGCATCACTACAAGGGATGGTCGTTCACCGGGGCTTATACTTTGGAGGCTTTGACACCGCCAAGGATGTGATGGTACCACTAGACTCGCCCCTGTGGCAGCGCTGGGTGACAGCACAGGCAGTCACTTCCATGGCGGG                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      ]
[-] EMBL CB665331             [                                                                                                                                                                                                                                                                                                                                                                                                                            GCCAGCATCACTACAAGGGATGGTCGTTCACCGGGGCTTATACTTTGGAGGCTTAGACACCGCCAAGGATGTGATGGTACCACTAGACTCGCCCCTGTGGCAGCGCTGGGTGACAGCACAGGCAGTCACTTCCATGGCGGGGCTCATCTCGTACCCGCTGGATACCGTGCGAAGGAGGATGATGATGCAATCAGGGATGGATGTGCAGATGTACAGCAGCACCCTTGATTGCTGGAGGAAGATCTACAAGGTGGAGGGGATCAAGTCGTTCTACCGCGGAGCACTTTCTAACATGTTTAGGAGCACTGGCGCTGCCGCCATACTTGTTTTGTATGATGAAGTTAAGAAGTTTATGGACAGGGGTAGGTTATGACTTACGACACGTATAGAGGGTTTGGTTCAGGTTCTCCACAGATTTTTGGATTCAGTATGGAGATTAGACCGCCAAAGGTACAGGGAGCAGCAAGCTCGAGCATTTTGTAATAGAGTTGTAGTACTGGATTCCTCCAGGTCACTAACCCAGCTCGATGTAACTGGCGTTCTTCATGGTCTGAAGATGGTAGCTCTTGTTTGTTCATTTGGTTTGAAGGCAGAGCTTTGCTTCTTGTGTTATTGTCATTGGTTGTATGCCAGCCTACACGTGTGACTCAAAAGTTCACTCTTCAGAGTTCAAACGGTAGTTTCACGGCGAATTTCGGTCAATTTCTGCGTGGCAGTCGAACAAAATTGTCTTGTCAAGAAATCGCTTATGAGCACGCAGACAAGGCACTTGCGAGATTACTTTACTCAAGCCTCGGTTGAATTGCAAAACTAAAAAGA]
[+] EMBL CA766356             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                               GACTTACGACACGTATAGAGGGTTTGGTTCAGGTTCTCCACAGATTTTTGGATTCAGTATGGAGATTAGACCGCCAAAGGTACAGGGAGCAGCAAGCTCGAGCATTTTGTAATAGAGTTGTAGTACTGGATTCCTCCAGGTCACTAACCCAGCTCGATGTAACTGGCGTTCTTCATGGTCTGAAGATGGTAGCTCTTGTTTGTTCATTTGGTTTGAAGGCAGAGCTTTGCT                                                                                                                                                                                                                         ]


>consensus_10389#1 GCAACGCGGCGCTGCTGGGCCGCGCGCGCAGGTTCCGCGGGTTCGCCGACTGCGTGGCGC GCACCGTCCGCGACGAGGGCGTGCTCTCCCTCTGGCGCGGCAACGGCACCGCCGTCATCC GGTACTACCCCTCCGTCGCCCTCAACTTCTCCCTCAAGGATCTGTACAGGAGCATACTGA AAGATGCAGGAACCTCAGCTGATAACAAGTTCTCTTCTATTGCTTTAACCAACTTCATTG CTGGTGCTGCGGCTGGATGTACTACTCTGGTCCTCATTTATCCACTTGATATTGCTCATA CCCGTCTTGCAGCTGATATTGGCCGGACCGATACTCGCCAGTTCAGAGGCATTTGCCACT TCGTTCAAACCATCTACAATAAAAACGGCATCCGGGGTATCTACAGAGGATTGCCAGCAT CACTACAAGGGATGGTCGTTCACCGGGGCTTATACTTTGGAGGCTTTGACACCGCCAAGG ATGTGATGGTACCACTAGACTCGCCCCTGTGGCAGCGCTGGGTGACAGCACAGGCAGTCA CTTCCATGGCGGGGCTCATCTCGTACCCGCTGGATACCGTGCGAAGGAGGATGATGATGC AATCAGGGATGGATGTGCAGATGTACAGCAGCACCCTTGATTGCTGGAGGAAGATCTACA AGGTGGAGGGGATCAAGTCGTTCTACCGCGGAGCACTTTCTAACATGTTTAGGAGCACTG GCGCTGCCGCCATACTTGTTTTGTATGATGAAGTTAAGAAGTTTATGGACAGGGGTAGGT TATGACTTACGACACGTATAGAGGGTTTGGTTCAGGTTCTCCACAGATTTTTGGATTCAG TATGGAGATTAGACCGCCAAAGGTACAGGGAGCAGCAAGCTCGAGCATTTTGTAATAGAG TTGTAGTACTGGATTCCTCCAGGTCACTAACCCAGCTCGATGTAACTGGCGTTCTTCATG GTCTGAAGATGGTAGCTCTTGTTTGTTCATTTGGTTTGAAGGCAGAGCTTTGCTTCTTGT GTTATTGTCATTGGTTGTATGCCAGCCTACACGTGTGACTCAAAAGTTCACTCTTCAGAG TTCAAACGGTAGTTTCACGGCGAATTTCGGTCAATTTCTGCGTGGCAGTCGAACAAAATT GTCTTGTCAAGAAATCGCTTATGAGCACGCAGACAAGGCACTTGCGAGATTACTTTACTC AAGCCTCGGTTGAATTGCAAAACTAAAAAGA



consensusID : consensus_10389#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 286
fasta sequence
                              [GTTTGCTGGAGGAAGATCTACCAGGTGGAGGGGATCCATCGTTTTACCCCGGAGCCCTTTCTACATGTTTAGGAGCCCTGGCGCTGCCCCCATACTTGTGTTGTATGATGAATTAAGAAGTTTATGGAACCGGGGTAGTTATGACTTACGACACGTATAGAGGGTTTGGTTCAGGTTCTCCCCCGATTTTTGGATTCCGTATGGAGATTAGACCCCCCAAGGTACCGGGACCAGCCAGCTCGAGCCTTTTGTAATAGAGCTTGTAGTACTGGATTCCTCCCGGTCA]

[+] EMBL BI810197             [GTTTGCTGGAGGAAGATCTACCAGGTGGAGGGGATCCATCGTTTTACCCCGGAGCCCTTTCTACATGTTTAGGAGCCCTGGCGCTGCCCCCATACTTGTGTTGTATGATGAATTAAGAAGTTTATGGAACCGGGGTAGTTATGACTTACGACACGTATAGAGGGTTTGGTTCAGGTTCTCCCCCGATTTTTGGATTCCGTATGGAGATTAGACCCCCCAAGGTACCGGGACCAGCCAGCTCGAGCCTTTTGTAATAGAGCTTGTAGTACTGGATTCCTCCCGGTCA]


>consensus_10389#2 GTTTGCTGGAGGAAGATCTACCAGGTGGAGGGGATCCATCGTTTTACCCCGGAGCCCTTT CTACATGTTTAGGAGCCCTGGCGCTGCCCCCATACTTGTGTTGTATGATGAATTAAGAAG TTTATGGAACCGGGGTAGTTATGACTTACGACACGTATAGAGGGTTTGGTTCAGGTTCTC CCCCGATTTTTGGATTCCGTATGGAGATTAGACCCCCCAAGGTACCGGGACCAGCCAGCT CGAGCCTTTTGTAATAGAGCTTGTAGTACTGGATTCCTCCCGGTCA



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_10389#1      ------------------------------------------------------------
consensus_10389#2      ------------------------------------------------------------
consensus_10389#0      GGAGAGAGGAGAAGGGAAGGGAGGAGAGGCGAATGAGCGAGGAGGCGGCGGCGGCGGCGG 60
                                                                                   

consensus_10389#1      ------------------------------------------------------------
consensus_10389#2      ------------------------------------------------------------
consensus_10389#0      CGGCGGCGGGAGCGGCGGGAGTGGAGGAGTCGTTAGGGAGGCGGAGGAGTAGGAGGGGCG 120
                                                                                   

consensus_10389#1      ------------------------------------------------------------
consensus_10389#2      ------------------------------------------------------------
consensus_10389#0      GTGGTGGTGATGGGGTGGGGATGGGGGCGGCGGCGGCGGCGAGGGTGTGGGAGTTCGAGC 180
                                                                                   

consensus_10389#1      ------------------------------------------------------------
consensus_10389#2      ------------------------------------------------------------
consensus_10389#0      GGGATCTGGTGGCCGGGGCGGCGATGGGCGGCGCCGTGCACACGGTGGTGGCGCCGATCG 240
                                                                                   

consensus_10389#1      ---------------------------------GCAACGCGGCGCTGCTGGGCCGCGCGC 27
consensus_10389#2      ------------------------------------------------------------
consensus_10389#0      AGCGCGCCAAGCTGCTGCTCCAGACGCAGGACGGCAACGCGGCGCTGCTGGGCCGCGCGC 300
                                                                                   

consensus_10389#1      GCAGGTTCCGCGGGTTCGCCGACTGCGTGGCGCGCACCGTCCGCGACGAGGGCGTGCTCT 87
consensus_10389#2      ------------------------------------------------------------
consensus_10389#0      GCAGGTTCCGCGGGTTCGCCGACTGCGTGGCGCGCACCGTCCGCGACGAGGGCGTGCTCT 360
                                                                                   

consensus_10389#1      CCCTCTGGCGCGGCAACGGCACCGCCGTCATCCGGTACTACCCCTCCGTCGCCCTCAACT 147
consensus_10389#2      ------------------------------------------------------------
consensus_10389#0      CCCTCTGGCGCGGCAACGGCACCGCCGTCATCCGGTACTACCCCTCCGTCGCCCTCAACT 420
                                                                                   

consensus_10389#1      TCTCCCTCAAGGATCTGTACAGGAGC----ATACTGAAAGATGCAGGAACCTCAGCTGAT 203
consensus_10389#2      ------------------------------------------------------------
consensus_10389#0      TCTCCCTCAAGGTTCCCACCCCCACCCCGAAACCCCCCCGCCATTTTTGTTCTTACTGTT 480
                                                                                   

consensus_10389#1      AACAAGTTCTCTTCTATTGCTTTAACCAACTTCATTGCTGGTGCTGCGGCTGGATGTACT 263
consensus_10389#2      ------------------------------------------------------------
consensus_10389#0      TGTTTGTTCCTTGTTGTCCGAGTTATCGATTCGTACGTTACAACCGCATCAATATTGCTT 540
                                                                                   

consensus_10389#1      ACTCTGGTCCTCATTTATCCACTTGATATTGCTCATACCCGTCTTGCAGCTGATATTGGC 323
consensus_10389#2      ------------------------------------------------------------
consensus_10389#0      CGGTTTGAGATAACAGTGCCAGTGCGATCTTGTGGGTGTTTTGGTGCGGCGGATTTGGGG 600
                                                                                   

consensus_10389#1      CGGACCGATACTCGCCAGTTCAGAGGCATTTGC-CACTTCGTTCAAACCATCTACAATAA 382
consensus_10389#2      ------------------------------------------------------------
consensus_10389#0      TTCATGGTTCCATTCCTTGCTTGATCGGTTCGTATGCTTTAGTGTGTGATTCGATGAGCA 660
                                                                                   

consensus_10389#1      AAACGGCATCCGGGGTATCTACAGAGGATTG--CCAGCATCACTACAAGGGATGGTCGTT 440
consensus_10389#2      ------------------------------------------------------------
consensus_10389#0      CAGGAATTGTGGTGATGTCGGTAACTTCTTGGTTTGGGGAAGCATCTGGTACTGGTTCTA 720
                                                                                   

consensus_10389#1      CACCGGG--GCTTATACTTTGGAGGCTTTGACACCGCCAAGGATGTGATGGTACCACTAG 498
consensus_10389#2      ------------------------------------------------------------
consensus_10389#0      CAGCGTGCGGTGTAAATTCTTGAGGATGAGAGATTGTATTAGGTCATTAGATTCTGCTGG 780
                                                                                   

consensus_10389#1      ACTCGCCCCTGTGGCAG-----CGCTGGGTGACAGCACAGGCAGTCACTTCCATGGCGGG 553
consensus_10389#2      ------------------------------------------------------------
consensus_10389#0      GATTTCACTTTCGGGGGAGAAATGTTTGCGGACGGAAATAGAAAAGGAATCAAAGAATAA 840
                                                                                   

consensus_10389#1      GCTCATCTCGTACCCGCTGGATACCGTGCGAAGGAGGATGATGATGCAATCAGGGATGGA 613
consensus_10389#2      ------------------------------------------------------------
consensus_10389#0      AGTGCTCTCGAGTCTTATGAAAGAGCACTATAGACTAGCACTCATGAACACTAAATGGCA 900
                                                                                   

consensus_10389#1      TGTGCAGATGTACAGCAGCACCCTTGATTGCTGGAG--GAAGATCTACAAGGTGGAGGGG 671
consensus_10389#2      -------------------------GTTTGCTGGAG--GAAGATCTACCAGGTGGAGGGG 33
consensus_10389#0      TCTTGATGCACATATTCTCACAAC-ATTTGTCGTACTTGTTAGTCATTGTTTCCAATAGC 959
                                                  ***  * *   *    **          *  * 

consensus_10389#1      ATCAAGTCGTTCTACCGCGGAGCACTTTCTAACATGT-TTAGGAGCACTGGCGCTGCCGC 730
consensus_10389#2      ATCCA-TCGTTTTACCCCGGAGCCCTTTCTA-CATGT-TTAGGAGCCCTGGCGCTGCCCC 90
consensus_10389#0      AGCAATGCCAGTTAGCATGTAAACCTTTTTGTTCTCTATTGAGGATCTAGGAGATAGGAA 1019
                       * * *  *    ** *  * *   **** *    * * **  *      ** * *     

consensus_10389#1      CATACTTGTTTTGTATGATGAAGTTAAGAA---GTTTATGGACAGGGGTA---GGTTATG 784
consensus_10389#2      CATACTTGTGTTGTATGATGAA-TTAAGAA---GTTTATGGAACCGGGGT---AGTTATG 143
consensus_10389#0      CAGTACTGTACATCGATATAAATTTCATGATTGGTTCATTTGAATGGTACTCCAATTGTA 1079
                       **    ***        ** ** ** *  *   *** **      **        ** * 

consensus_10389#1      ACTTACGACACGTATAGAGGGTTTGGTTCAGGTTCTCCACAGATTTT-TGGATT---CAG 840
consensus_10389#2      ACTTACGACACGTATAGAGGGTTTGGTTCAGGTTCTCCCCCGATTTT-TGGATT---CCG 199
consensus_10389#0      CCACACTA-GCATCTTGCTAGTTATTGCCATTATGTGGTGGTATCTTGTGAACTGATCCG 1138
                        *  ** *  * * * *   ***     **   * *      ** ** ** * *   * *

consensus_10389#1      TA-TGGAGATTAGACCGC--CAAAGGTACAGGGAGCAGCAAGCTCG------AGCATTTT 891
consensus_10389#2      TA-TGGAGATTAGACCCC--CCAAGGTACCGGGACCAGCCAGCTCG------AGCCTTTT 250
consensus_10389#0      TAATGAACATTTGATTCCAACAACAGTGATGTAACTACTAAATTAGTAAGAAGGCATTAT 1198
                       ** ** * *** **   *  * *  **   *  *  *   *  * *       ** ** *

consensus_10389#1      GTAATAGAG-TTGTAGTACTGGATTCCTCCAGGTCACTAACCCAGCTCGATGTAACTGGC 950
consensus_10389#2      GTAATAGAGCTTGTAGTACTGGATTCCTCCCGGTCA------------------------ 286
consensus_10389#0      GTGGACTTGCTCATGCGTTAAGGACTGTCATTGTTG-TCATGGTGTTCGATGCAACATAT 1257
                       **      * *  *       *     **   **                          

consensus_10389#1      GTTCTTCATGGTCTGAAGATGGTAGCTCTTGTTTGTTCATTTGGTTTGAAGGCAGAGCTT 1010
consensus_10389#2      ------------------------------------------------------------
consensus_10389#0      GTTGTTATTAATGTGTGATGAAATAATCATATATAGTTACTGATTACAAAAGATGTACAA 1317
                                                                                   

consensus_10389#1      TGCTTCTTGTGTTATTGTCATTGGTTGTATGCCAGCCTACACGTGTGACTCAAAAGTTCA 1070
consensus_10389#2      ------------------------------------------------------------
consensus_10389#0      AAAGATCTG-ATGCCAAATATGAGAAACTTAGAAAAGCTTTTGGGCAAGATGACAGCCAT 1376
                                                                                   

consensus_10389#1      CTCTTCAGAGTTCAAACGGTAGTTTCACGGCGAATTTCGGTCAATTTCTGCGTGGCAGTC 1130
consensus_10389#2      ------------------------------------------------------------
consensus_10389#0      TCTCTAAAATAACAAATGGCAAAGCGACATTGCTAAATGGATATTTGAGTTGCACCTTTT 1436
                                                                                   

consensus_10389#1      GAACAAAATTGTCTTGTCAAGAAATCGC------TTATGAGCACGCAGACAAGGCACTTG 1184
consensus_10389#2      ------------------------------------------------------------
consensus_10389#0      TAAGCAGCTGTAGGACTGTAGGAGTTGCAGGCACTTCCTGCCATAGTCAAATAGCATGAC 1496
                                                                                   

consensus_10389#1      CGAGATTACTTTACTCAAGCCTCGGTTGAATTGCAAAACTAAAAAGA------------- 1231
consensus_10389#2      ------------------------------------------------------------
consensus_10389#0      CATGATCAAATCCCTTGATATATAGTCATATTATAACTCAAGAAACAAATAGATTGCATC 1556
                                                                                   

consensus_10389#1      ------------------------------------------------------------
consensus_10389#2      ------------------------------------------------------------
consensus_10389#0      TACTGCCAGCTACTATAAGAGAAATATACATTGTACGGCAATATAGAACATAACAGTGAT 1616
                                                                                   

consensus_10389#1      ------------------------------------------------------------
consensus_10389#2      ------------------------------------------------------------
consensus_10389#0      AACTATTTGAAGATGGCCAATTAATTATCGTGTTTTTGCCTCTGCTGATTTTCGTGATAC 1676
                                                                                   

consensus_10389#1      ------------------------------------------------------------
consensus_10389#2      ------------------------------------------------------------
consensus_10389#0      TATTTGAAGCCAGGTTGCCCTGTGACTTGTACCGAATGCATCTGAGCTTATCTAAATTGC 1736
                                                                                   

consensus_10389#1      ------------------------------------------------------------
consensus_10389#2      ------------------------------------------------------------
consensus_10389#0      AGCAGGGTACTGCTTTGCCTTTACTCACTTTTACCAAATTATTCTTGAAGATTTATGTTG 1796
                                                                                   

consensus_10389#1      ------------------------------------------------------------
consensus_10389#2      ------------------------------------------------------------
consensus_10389#0      TGGATTATGGCCCATGCAACATATGTTTGGTTAATGTTAACATCTCTTCAGATGTGTCGA 1856
                                                                                   

consensus_10389#1      ------------------------------------------------------------
consensus_10389#2      ------------------------------------------------------------
consensus_10389#0      TTTGACTTGATGATTTCCACTCACACTTAGCTATGTTTCCTTGATGCTCAATTATGTTGA 1916
                                                                                   

consensus_10389#1      ------------------------------------------------------------
consensus_10389#2      ------------------------------------------------------------
consensus_10389#0      AACAAGAATTGCTCATCTTAGTGGCGAAAGACATCGAATGTATGATAAGTTGATAAACCA 1976
                                                                                   

consensus_10389#1      ------------------------------------------------------------
consensus_10389#2      ------------------------------------------------------------
consensus_10389#0      TAATGGTATAACAGATAATAACCGATGAGCAACTATGCACTACTTTACAACAGAGGTATC 2036
                                                                                   

consensus_10389#1      ------------------------------------------------------------
consensus_10389#2      ------------------------------------------------------------
consensus_10389#0      TAAAATATCTTATTGTAGAATAAGAGTTTTGTAAGAAAGCAATTATGGAAGTACGAACAA 2096
                                                                                   

consensus_10389#1      ------
consensus_10389#2      ------
consensus_10389#0      TGAAAA 2102
                             




Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)