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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_10401#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 763 fasta sequence
[ATTCTGGAGACACAATTGCACGCTGGGCTCAACGTGAGCAGCATGTTGGGAACAGAAGGTATAGTGACAGTCATGCAGAAAGAATGATCATCAATCAGCTCAAACATACAACAGTAGTTTGTTGGCATGCAAATACACCAACCAACACAGTGAGTAGGGCAGAAGAAACAGCAATCGTAGGCACCATCCAACACTCCAAACA-GCATCTCCAACAAACATCAAATAC-TGTTACAACTCTCAACACACAACCAATGCACAGACAAACCCAGAAAGGCCGGTATGATTGTAGCTATGCTCCGGAATGAGACACCGGTGAGGTGATGAATTGCCCGTCTTTGAAGCT-GTGGATGTACTGTTGGGGCAAAGCATGTTCCACCCAATCACCATCAGTAGCACCACT-TGGAACCATCACATTGATTTCACTAGATTTAGCTGAAGTGATGGAGGCTCCAAGTGAATCATTGCTTAAGTACAATTGACATCCAGATGTGTTGTCG-ATTGATATTGTTGGTGCTGTACCCTGGCATTGCACCTCAACACCATTGCAATTGACAACTTCAAAAGCTGCTACAACATGCTTGAAAACGATTCCAACTTTGGTGCATTTGTCAACAGTGATATTGTTCACTTTACCATTTACTTGAAGGACAGAATCCTTGCATCCATACACATATACAGATTGTCTAGCATCACAATCATCGATTGCAAGGTTCTTTTTACCAACTTGATTTTCGACCACCCATTTGCGCCCCATCTGAAGCTC]
[+] EMBL CB660485 [ATTCTGGAGACACAATTGCACGCTGGGCTCAACGTGAGCAGCATGTTGGGAACAGAAGGTATAGTGACAGTCATGCAGAAAGAATGATCATCAATCAGCTCAAACATACAACAGTAGTTTGTTGGCATGCAAATACACCAACCAACACAGTGAGTAGGGCAGAAGAAACAGCAATCGTAGGCACCATCCAACACTCCAAACA GCATCTCCAACAAACATCAAATAC TGTTACAACTCTCAACACACAACCAATGCACAGACAAACCCAGAAAGGCCGGTATGATTGTAGCTATGCTCCGGAATGAGACACCGGTGAGGTGATGAATTGCCCGTCTTTGAAGCT GTGGATGTACTGTTGGGGCAAAGCATGTTCCACCCAATCACCATCAGTAGCACCACT TGGAACCATCACATTGATTTCACTAGATTTAGCTGAAGTGATGGAGGCTCCAAGTGAATCATTGCTTAAGTACAATTGACATCCAGATGTGTTGTCG ATTGATATTGTTGGTGCTGTACCCTGGCATTGCACCTCAACACCATTGCAATTGACAACTTCAAAAGCTGCTACAACATGCTTGAAAACGATTCCAACTTTGGTGCATTTGTCAACAGTGATATTGTTCACTTTACCATTTACTTGAAGGACAGAATCCTTGCATCCATACACATATACAGATTGTCTAGCATCACAATCATCGATTGCAAGGTTCTTTTTACCAACTTGATTTTCGACCACCCATTTGCGCCCCATCTGAAGCTC]
[-] EMBL BI805090 [ tttttttttTAGTGAAAGTCATGCAGAAAGAATGATCATCAATCAG TCAAA ATACAA AGTAG TTGTTGG ATGGAAATACA CAA CAA A AGTGAGTAGGGCAGAAGAAACAGCAATCGTAGGCACCATCCAACACTCCAAACAGGGATCTCCAACAAACATCAAATACGTGGTACAACTCTCAA ACACAA CAATGCACAGACAAA CCAGAAAGGGCGGTATGATTGTAGCTATGCTCCGGAATGAGACACCGGTGAGGTGATGAATTGGCCGTCTTTGAAGCTGGTGGATGTACTGTGGGGGCAAAGCATGTTCCACCCAATCACCATCAGTAGCACCACTGTGGAACCATCACATTGATTTCACTAGATTTAGCTGAAGTGATGGAGGCTCCAAGTGAATCA TGGTTAAGTACAATTGACATCCAGATGTGTTGTCGCATCGATATCGTGGG ]
[-] EMBL CB096707 [ CAGTCATGCAGAAAGAGTGATCATCAATCAGCTCAAACATACAACAGTAGTTTGTTGGCATGCAAATACACCAACCAACACAGTGAGTAGGGCAGAAGAAACAGCAATCGTAGGCACCATCCAACACTCCAAACA GCATCTCCAACAAACATCAAATAC TGTTACAACTCTCAACACACAACCAATGCACAGACAAACCCAGAAAGGCCGGTATGATTGTAGCTATGCTCCGG ]
consensusID : consensus_10401#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 725 fasta sequence
[AACCCTGAGCTAAATTTTATTCTATTACTGTGGCAAAACTAAATTCTGTTTACCGAATGTTTCAGCATGTTGTAGCAGCTTTTGAAGTTGTCAATTGCAATGGTGTTGAGGTGCAATGCCAGGTATTCAGTTTTGGAATGCTATACTCATAACTGTAAATGTGTGAACAGTGTTAAGGAGTATTCTATCTGGTTACATTACTGCTCTTCCCTCTCTAAAAGGATGTCGCTTTTGTGTGTGTTCTGGATTGCTTGTCATACTTTTAGGATTTGACCTTTATCTAATTTTAGAAATATCAAGCTTGGGCATGCCCAGAATCATCTAGGTNTAAGCAATCTGCCGATCTCCTAATCTCCTTTGCTTGGTCAGTTATTATTATACGATGTCATAAAATCACTATTGGATGGTCAGGTCGAAAGACTGANATGTNGGACATTCACCCTCATCATGCTGCCAGCAGATGAGGCGCAAGTCTGGCACAAAGAATGCGAGGGACTAGATNATNNGCTNGTNTTGAACTNNATGTTNTATCNNGCTTCCTNTGAATTAGTANCTATAATTNNCACATTNATTCTGTCTAGAGCCTATTNTATTNGTGTTTCTGTGTCTGACCCNTGATGTTAGTTTCATNNNGCATCGGTACGTTAGCCTANNCATACCGGTTNAGTGCNNACTNNTTCNACANTCACCTTCATCATTAACTGACGTACGTCACGTNCGGTACT]
[+] EMBL CA753007 [AACCCTGAGCTAAATTTTATTCTATTACTGTGGCAAAACTAAATTCTGTTTACCGAATGTTTCAGCATGTTGTAGCAGCTTTTGAAGTTGTCAATTGCAATGGTGTTGAGGTGCAATGCCAGGTATTCAGTTTTGGAATGCTATACTCATAACTGTAAATGTGTGAACAGTGTTAAGGAGTATTCTATCTGGTTACATTACTGCTCTTCCCTCTCTAAAAGGATGTCGCTTTTGTGTGTGTTCTGGATTGCTTGTCATACTTTTAGGATTTGACCTTTATCTAATTTTAGAAATATCAAGCTTGGGCATGCCCAGAATCATCTAGGTNTAAGCAATCTGCCGATCTCCTAATCTCCTTTGCTTGGTCAGTTATTATTATACGATGTCATAAAATCACTATTGGATGGTCAGGTCGAAAGACTGANATGTNGGACATTCACCCTCATCATGCTGCCAGCAGATGAGGCGCAAGTCTGGCACAAAGAATGCGAGGGACTAGATNATNNGCTNGTNTTGAACTNNATGTTNTATCNNGCTTCCTNTGAATTAGTANCTATAATTNNCACATTNATTCTGTCTAGAGCCTATTNTATTNGTGTTTCTGTGTCTGACCCNTGATGTTAGTTTCATNNNGCATCGGTACGTTAGCCTANNCATACCGGTTNAGTGCNNACTNNTTCNACANTCACCTTCATCATTAACTGACGTACGTCACGTNCGGTACT]
consensusID : consensus_10401#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 592 fasta sequence
[TTTTTTTTTTTTTTTTTTTTTTTTGCAGAAAGAATGATCATCAATCAGCTCAAACATACAACAGTAGTTTGTTGGCATGCAAATACACCAACCAACACAGTGAGTAGGGCAGAAGAAACAGCAATCGTAGGCACCATCCAACACTCCAAACAGCATCTCCAACAAACATCAAATACTGTTACAACTCTCAACACACAACCAATGCACAGACAAACCCAGAAAGGCCGGTATGATTGTA-GCTATGCTCCGGAATGAGACACCGGTGAGGTGATGAATTGCCCGTCTTTGAAGCTGTGGATGTACTGTTGGGGCAA-AGCATGTTCCACCCAATCACCATCAGTAGCACCACTT-GGAACCATCACATTGA-TTTCACTAGATTTAGCTGAAGTGATGGAGGCTCCA-AGTGAATCATTGCTTAAGTACAA-TTGACATCCAGATGTGTTGTCGATTGATATTGTTGGTGCTGTACCCTGGCATTGCACCTCAACACCATTGCAATTGACAACTTCAAAAGCTGCTACAACATGCTTGAAAACGATTCCAACTTTGGNGCATTTGTCAACAGTGATATTGTTCACTTTACCATTTACTT]
[-] EMBL AU101585 [TTTTTTTTTTTTTTTTTTTTTTTTGCAGAAAGAATGATCATCAATCAGCTCAAACATACAACAGTAGTTTGTTGGCATGCAAATACACCAACCAACACAGTGAGTAGGGCAGAAGAAACAGCAATCGTAGGCACCATCCAACACTCCAAACAGCATCTCCAACAAACATCAAATACTGTTACAACTCTCAACACACAACCAATGCACAGACAAACCCAGAAAGGCCGGTATGATTGTA GCTATGCTCCGGAATGAGACACCGGTGAGGTGATGAATTGCCCGTCTTTGAAGCTGTGGATGTACTGTTGGGGNAA AGC ]
[-] EMBL AU095560 [ TTTTTTTTTTTTTTGACAGTCATGCAGAAAGAATGATCATCAATCAGCTCAAACATACAACAGTAGTTTGTTGGCATGCAAATACACCAACCAACACAGTGAGTAGGGCAGAAGAAACAGCAATCGTAGGCACCATCCAACACTCCAAACAGCATCTCCAACAAACATCAAATACTGTTACAACTCTCAACACACAACCAATGCACAGACAAACCCAGAAAGGCCGGTATGATTGTA GCTATGCTCCGGAATGAGACACCGGTGAGGTGATGAATTGCCCGTCTTTGAAGCTGTGGATGTACTGTTGGGGCAA AGCATGTTCCACCCAATCACCATCAGTAGCACCACTT GGAACCATCACATTGA TTTCACTAGATTTAGCTGAAGTGATGGAGGCTCCA AGTGAATCATTGCTTAAGTACAA TTGACATCCAGATGTGTTGTCGATTGATATTGTTGGTGCTGTACCCTGGCATTGCACCTCAACACCATTGCAATTGACAACTTCAAAAGCTGCTACAACATGCTTGAAAACGATTCCAACTTTGGNGCATTTGTCAACAGTGATATTGTTCACTTTACCATTTACTT]
[-] EMBL BI810033 [ TTTTTTTT AGAAAGAATGATCATCAATCAGCTCAAACATACAACAGTAG TTGTGGGCATGCAAATACACCAACCAACACAGTGAGTAGGGCAGAAGAAACAGCAATCGTAGGCACCATCCAACACTCCAAACAGCATCTCCAACAAACATCAAATACTGTTACAACTCTCAACACACAACCAATG ACAGACAAACCCAGAAAGG CGGTATGATTGTACGCTATGCTCCGGAATGAGACACCGGTGAGGTGATGAATTG CCGTCTTTGAAGCTGTGGATGTACTGTTGGGGCAACAGCATGTTCCACCCAATCACCATCAGTAGCACCACTTGGGAACCATCACATTGATTTTCACTAGATTTAGCTGAAGTGATGGAGGCTCCACAGTGAATCATTG TTAAGTACAATTTGACATCCAGATGTGTTGTCGA TGATA TG TGGTGCT ]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_10401#0 ATTCTGGAGACACAATTGCACGCTGGGCTCAACGTGAGCAGCATGTTGGGAACAGAAGGT 60
consensus_10401#2 --------------------------------------------------TTTTTTTTTT 10
consensus_10401#1 ---------------------------------------------AACCCTGAGCTAAAT 15
*
consensus_10401#0 ATAGTGACAGTCATGCAGAAAGAATGATCATCAATCAGCTCAAACATACAACAGTAGTTT 120
consensus_10401#2 TTTTTTTTTTTTTTGCAGAAAGAATGATCATCAATCAGCTCAAACATACAACAGTAGTTT 70
consensus_10401#1 TTTATTCTATTACTGTGGCAAAACTAAATTCTGTTTA--CCGAATGTTTCAGCATGTTGT 73
* * * ** * ** * * * * * * ** * * * * *
consensus_10401#0 GTTGGCATGCAAATACACCAACCAACACAGTGAGTAGGGCAGAAGAAACAGCAATCGTAG 180
consensus_10401#2 GTTGGCATGCAAATACACCAACCAACACAGTGAGTAGGGCAGAAGAAACAGCAATCGTAG 130
consensus_10401#1 AGCAGCTTTTGAAGTTGTCAATTGCAATGGTGT-TGAGGTGCAATGCCAGGTATTCAGTT 132
** * ** *** * *** * ** ** * * **
consensus_10401#0 GCACCATCCAACACTCCAAACAGCA--TCTCCAACAAACATCAAATACTGTTACAACTCT 238
consensus_10401#2 GCACCATCCAACACTCCAAACAGCA--TCTCCAACAAACATCAAATACTGTTACAACTCT 188
consensus_10401#1 TTGGAATGCTATACTCATAACTGTAAATGTGTGAACAGTGTTAAGGAGTATTCTA--TCT 190
** * * **** *** * * * * * * * ** * * ** * ***
consensus_10401#0 CAACACACAACCAATGCACAGACAAACCCAGAAAGGCCGGTATGATTGTAGCTATGCTCC 298
consensus_10401#2 CAACACACAACCAATGCACAGACAAACCCAGAAAGGCCGGTATGATTGTAGCTATGCTCC 248
consensus_10401#1 GGTTACATTACTGCTCTTCCCTC----TCTAAAAGGATGTCGCTTTTGTG--TGTGTTCT 244
*** ** * * * * ***** * **** * ** **
consensus_10401#0 GGAATGAGACACCGGTGAGGTGATGAATTGCCCGTC-TTTGAAGCTGTGGATGTACTGTT 357
consensus_10401#2 GGAATGAGACACCGGTGAGGTGATGAATTGCCCGTC-TTTGAAGCTGTGGATGTACTGTT 307
consensus_10401#1 GGATTG--CTTGTCATACTTTTAGGATTTGACCTTTATCTAATTTTAGAAATATCAAGCT 302
*** ** * * * ** *** ** * * * * * ** * * *
consensus_10401#0 GGGGCAAAGCATGTTCCACCCAATCACCATCAGTAGCACCACTTGGAACCATCACATTGA 417
consensus_10401#2 GGGGCAAAGCATGTTCCACCCAATCACCATCAGTAGCACCACTTGGAACCATCACATTGA 367
consensus_10401#1 TGGGCATGCCCAGAATCATCTAGGTNTAAGCAAT-------CTGCCGATCTCCTAATCTC 355
***** * * ** * * * ** * ** * * * **
consensus_10401#0 TTTCACTAGATTTAGCTGAAGTGATG-GAGGCTCCAAGTGAATCATTGCTTAAGTACAAT 476
consensus_10401#2 TTTCACTAGATTTAGCTGAAGTGATG-GAGGCTCCAAGTGAATCATTGCTTAAGTACAAT 426
consensus_10401#1 CTTTGCTTGGTC-AGTTATTATTATACGATGTCATAAAATCACTATTGGATG-GTCAGGT 413
** ** * * ** * * ** ** * ** * **** * ** *
consensus_10401#0 TGACATCCAGATGTGTTGTCGATTGATATTGTTGGTGCTGTACCCTGGCATTGCAC---C 533
consensus_10401#2 TGACATCCAGATGTGTTGTCGATTGATATTGTTGGTGCTGTACCCTGGCATTGCAC---C 483
consensus_10401#1 CGAAAGACTGANATGTNGGACATTCACCCTCATCATGCTGCCAGCAGATGAGGCGCAAGT 473
** * * ** *** * *** * * * ***** * * ** *
consensus_10401#0 TCAACACCAT---TGCAATTGACAACTTCAAAAGCTGCTA-----CAACATGCTTGAAAA 585
consensus_10401#2 TCAACACCAT---TGCAATTGACAACTTCAAAAGCTGCTA-----CAACATGCTTGAAAA 535
consensus_10401#1 CTGGCACAAAGAATGCGAGGGACTAGATNATNNGCTNGTNTTGAACTNNATGTTNTATCN 533
*** * *** * *** * * * *** * * *** * *
consensus_10401#0 CGATTCCAACTTTGGTGCATTTGTCAACAGTGATATTGTTCACTTTACCATTTACTTGAA 645
consensus_10401#2 CGATTCCAACTTTGGNGCATTTGTCAACAGTGATATTGTTCACTTTACCATTTACTT--- 592
consensus_10401#1 NGCTTCCTNTGAATTAGTANCTATAATTNNCACATTNATTCTGTCTAGAGCCTATTNTAT 593
* **** * * * * * * *** * ** ** *
consensus_10401#0 GGACAGAATCCTTGCATCCATACACATATACAGATTGTCTAGCATCACAATCATCGATTG 705
consensus_10401#2 ------------------------------------------------------------
consensus_10401#1 TNGT-GTTTCTGTGTCTGACCCNTGATGTTAGTTTCATNNNGCATCGGTACGTTAGCCTA 652
consensus_10401#0 CAAGGTTCTTTTTACCAACTTGATTTTCGACCACCCATTTGCGCCCCATCTGAAGCTC-- 763
consensus_10401#2 ------------------------------------------------------------
consensus_10401#1 NNCATACCGGTTNAGTGCNNACTNNTTCNACANTCACCTTCATCATTAACTGACGTACGT 712
consensus_10401#0 -------------
consensus_10401#2 -------------
consensus_10401#1 CACGTNCGGTACT 725
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||