These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_10404#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 6 consensus length = 1691 fasta sequence [AGGTAATAATTATTTCTGGTTCACATGCGCTGCATCAGCATGAAAAGTTAGCTGTTGCAGTTTCCAAAGCAATGCGCAGCCATTCTATTCATGAAACGAAGACCGATGGTCGATTTCATGTTCGTACCAAACCATATTTGGATGGAGCAATACTCAGAGAGGAAATGGAACGCTCTGCCGATGTGCTGTCCGCTGGTTTATTAGAAGTTGCAAATCCTTCCCTCTCAAGTAGGTTCTTCCTGAAGCAGCATTGGTTGAACGAGCAAGACGACACGCATGATTCCATAAAACATAAGCCTATATGGGAATCTTACATGCCCAGAAATAAGAAAGAAAAACGAGGAACTGGAAAGAAGAAACATGGAGATCTGTACCGGACTTATGGAACCAGAGTGATTCCAGTCTTTGTATTGTCATTGGCTGATGTTGATGCTGAGCTTCTGATGGAAGAGGAAAATCTTGTTTGGACAAGCAAAGATGTTGTCATTGTACTTGAGCATAACAATGAAAAGGTTCCTCTAAGTTATGTGTCAGAAACAACTAGACAGTTCGCTTTTCCGTCTCTAGCACAGCGCCACATCTTGGCAGGTTTAGCTTCAGCAGTTGGAGGTCTGAGTGCACCATATGAAAGGGCATCACATATTCATGAAAGACCTGTTGTGAATTGGTTGTGGGCTGCTGGATGCCATCCCTTTGGACCATTCTCAAACTCCTCTAAGATCAGTCAAATCCTTCAGGATGTTGCACTGAGAACTACAATTTATGCTCAAGTTGATGCTGCTCTTCACAAAATAAGGGACACATC-GGAGTTTGTTCAATCCTTTGCATCAGAGCATCTTAAGACGCCATTAGGAGAACCTGTTAAAGGTAAACAAAACAAGTCCAACACAGAGTTATGGGTAGAGAAATTCTATAAGAAGGTAACAACTATGCCAGAACCTTTCCCTCATGAGCTTGTTGAACGTTTGGAAGAATACCTGGATAGGCTTGAAGGACAACTTGTGGATTTATCCTCCTTGCTCTATGACCATCGTCTAGTTGATGCTTATCAAAACAGTTCTGATATCCTGCAGAGCACTATATTTACACAGCAGTACGTAGAACGTGTATTGTCTGCGGAAAGAGACAAGATGAAGTGTTGCACTATTGAATATAATCACCCCAAGCAGTCATCACAGGCGTTTGTTTACGGAGGGATCCTTCTGGCTGGATTTCTTGTCTACTCTTTGGTTATTTTCTTCTCTTCACCAGTCCGCTAATTCACATGCGTCCAGATGAAGATGACCCTGAATTCTCTCTAGTATGACAAGATGGCTAAGCATGATAGAATTTGAAACGATTGCTGAAAAGCTGTCACTGCGATATGCAAGGTGTGCCCGGCCTCATAAGGATGTCAATCTGCATTCAGCCATGACTAGACAATCTGCTGTATACGTTGGGGGCTTTCTCGGCACAGTTTTGTCTATGAGAATGTTTGCTCTTTAGTACCTACA-GGCAACCCCATAGTTAGA-TGATTCATTCGGCCATCATAAATGGCCGATATAATCCAGAGGGGAGTTCAGATAAGGTCTAATGCAGGCCATTTACGGTTTTCCCCTTTGCCG-GTATGTTACGAAAAACCTGGTATGTTAATAAAACCCATAATCCTCATGATGCAAACAATTGTTTTCCTTTCTCTAAAAAAAAAAAAA] [+] EMBL CB667297 [AGGTAATAATTATTTCTGGTTCACATGCGCTGCATCAGCATGAAAAGTTAGCTGTTGCAGTTTCCAAAGCAATGCGCAGCCATTCTATTCATGAAACGAAGACCGATGGTCGATTTCATGTTCGTACCAAACCATATTTGGATGGAGCAATACTCAGAGAGGAAATGGAACGCTCTGCCGATGTGCTGTCCGCTGGTTTATTAGAAGTTGCAAATCCTTCCCTCTCAAGTAGGTTCTTCCTGAAGCAGCATTGGTTGAACGAGCAAGACGACACGCATGATTCCATAAAACATAAGCCTATATGGGAATCTTACATGCCCAGAAATAAGAAAGAAAAACGAGGAACTGGAAAGAAGAAACATGGAGATCTGTACCGGACTTATGGAACCAGAGTGATTCCAGTCTTTGTATTGTCATTGGCTGATGTTGATGCTGAGCTTCTGATGGAAGAGGAAAATCTTGTTTGGACAAGCAAAGATGTTGTCATTGTACTTGAGCATAACAATGAAAAGGTTCCTCTAAGTTATGTGTCAGAAACAACTAGACAGTTCGCTTTTCCGTCTCTAGCACAGCGCCACATCTTGGCAGGTTTAGCTTCAGCAGTTGGAGGTCTGAGTGCACCATATGAAAGGGCATCACATATTCATGAAAGACCTGTTGTGAATTGGTTGTGGGCTGCTGGATGCCATCCCTTTGGACCATTCTCAAACTCCTCTAAGATCAGTCAAATCCTTCAGGATGTTGCACTGAGAACTACAATTTATGCTCAAGTTGATGCTGCTCTTCACAAAATAAGGGACACATCNGGAG TTGTTCAAT ] [+] EMBL AK068123 [ GCAAGACGACACGCATGATTCCATAAAACATAAGCCTATATGGGAATCTTACATGCCAAGAAATAAGAAAGAAAAACGAGGAACTGGAAAGAAGAAACATGGAGATCTGTACCGGACTTATGGAACCAGAGTGATTCCAGTCTTTGTATTGTCATTGGCTGATGTTGATGCTGAGCTTCTGATGGAAGAGGAAAATCTTGTTTGGACAAGCAAAGATGTTGTCATTGTACTTGAGCATAACAATGAAAAGGTTCCTCTAAGTTATGTGTCAGAAACAACTAGACAGTTCGCTTTTCCGTCTCTAGCACAGCGCCACATCTTGGCAGGTTTAGCTTCAGCAGTTGGAGGTCTGAGTGCACCATATGAAAGGGCATCACATATTCATGAAAGACCTGTTGTGAATTGGTTGTGGGCTGCTGGATGCCATCCCTTTGGACCATTCTCAAACTCCTCTAAGATCAGTCAAATCCTTCAGGATGTTGCACTGAGAACTACAATTTATGCTCAAGTTGATGCTGCTCTTCACAAAATAAGGGACACATC GGAGTTTGTTCAATCCTTTGCATCAGAGCATCTTAAGACGCCATTAGGAGAACCTGTTAAAGGTAAACAAAACAAGTCCAACACAGAGTTATGGGTAGAGAAATTCTATAAGAAGGTAACAACTATGCCAGAACCTTTCCCTCATGAGCTTGTTGAACGTTTGGAAGAATACCTGGATAGGCTTGAAGGACAACTTGTGGATTTATCCTCCTTGCTCTATGACCATCGTCTAGTTGATGCTTATCAAAACAGTTCTGATATCCTGCAGAGCACTATATTTACACAGCAGTACGTAGAACGTGTATTGTCTGCGGAAAGAGACAAGATGAAGTGTTGCACTATTGAATATAATCACCCCAAGCAGTCATCACAGGCGTTTGTTTACGGAGGGATCCTTCTGGCTGGATTTCTTGTCTACTCTTTGGTTATTTTCTTCTCTTCACCAGTCCGCTAATTCACATGCGTCCAGATGAAGATGACCCTGAATTCTCTCTAGTATGACAAGATGGCTAAGCATGATAGAATTTGAAACGATTGCTGAAAAGCTGTCACTGCGATATGCAAGGTGTGCCCGGCCTCATAAGGATGTCAATCTGCATTCAGCCATGACTAGACAATCTGCTGTATACGTTGGGGGCTTTCTCGGCACAGTTTTGTCTATGAGAATGTTTGCTCTTTAGTACCTACA GGCAACCCCATAGTTAGA TGATTCATTCGGCCATCATAAATGGCCGATATAATCCAGAGGGGAGTTCAGATAAGGTCTAATGCAGGCCATTTACGGTTTTCCCCTTTGCCG GTATGTTACGAAAAACCTGGTATGTTAATAAAACCCATAATC ] [+] EMBL AU065441 [ ATTCATGAAAGACCTGTTGTGAATTGGTTGTGGGCTGCTGGATGCCATCCCTTTGGACCATNCTCAAACTCCTCTAAGATCAGTCAAATCCTTCAGGATGTTGCACTGAGAACTACAATTTATGCTCAAGTTGATGCTGCTCTTCACAAAATAAGGGACACATC GGAGTTTGTTCAATCCTTTGCATCAGAGCATCTTAAGACGCCATTAGGAGAACCTGTTAAAGGTAAACAAAACAAGTCCAACACAGAGTTATGGGTAGAGAAATTCTATAAGAAGGTAACAACTATGCCAGAACCTTTCCCTCATGAGCTTGTTGAACGTTTGGAAGAATACCTGGATAGGCTTGAAGGNCAACTTGTGGATTTATCCTCCTTGCTCTATGACCATCGTCTAGTTGATGCTTATCAAAACAGTTCTtga ] [+] EMBL OSC28481 [ ACTCCTCTAAGATCAGTCAAATCCTTCAGGATGTTGCACTGAGAACTACAATTTATGCTCAAGTTGATGCTGCTCTTCACAAAATAAGGGACACATC GGAGTTTGTTCAATCCTTTGCATCAGAGCATCTTAAGACGCCATTAGGAGAACCTGTTAAAGGTAAACAAAACAAGTCCAACACAGAGTTATGGGTAGAGAAATTCTATAAGAAGGTAACAACTATGCCAGAACCTTTCCCTCATGAGCTTGTTGAACGTTTGGAAGAATACCTGGATAGGCTTGAGGGACAACTTGTGGATTTATCCTCCTTGCTCTATGACCATCGTCTAGTTGATG TTATCAAAACAGTTCTGATA ] [+] EMBL AU101650 [ TTTTCTTCTCTTCACAAGTCCGNTAATTCACATGCGTCCAGATGAAGATGACCCTGAATNCTCTCTAGTATGACAAGATGGCTAAGCATGATAGAATTTGAAACGATTGCTGAAAAGCTGTCACTGCGATATGCAAGGTGTNCCCGGCCTNATAAGGATGTCAATCTGCATTCAGCCATGACTAGACAATCTGCTGTATACGTTGGGGGNTTNCNCGGCACAGTTTTGTCTATGAGAATGTTTGCTCTTTAGTACCTACA GGCAACCCCATAGTTAGA TGATTCATTCGGCCATCATAAATGGCCGATATAATCCAGAGGGGAGTTCAGATAAGGTCTAATGCAGGCCATTTACGGTTTTCCCCTTTGCCG GTATGTTACGAAAAACCTGGTATGTTAATAAAACCCATAATCCTCATGATGCAAACAATTGTTTTCCTTTCTCTAAAAAAAAAAAAA] [+] EMBL AU162524 [ TTTTGTCTATGAGAATGTTTGCTCTTTAGTACCTACANGGCAACCCCATAGTTAGANTGATTCATTCGGCCATCATAAATGGCCGATATAATCCAGAGGGGAGTTCAGATAAGGTCTAATGCAGGCCATTTACGGTTTTCCCCTTTGCCGNGTATGTTACGAAAAACCTGGTATGTTAATAAAACCCATAATCCTCATGATGCAAAa ] consensusID : consensus_10404#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 850 fasta sequence [AGAGAAATTCTATAAGAAGGTAACAACTATGCCAGAACCTTTCCCTCATGAGCTTGTTGAACGTTTGGAAGAATACCTGGATGTAAGTATTTATTTTTGTTACTGCACCAGTTTATTTTTAATTCAAAGTTCTATTTGCAGCTGATTCCTTTTTTTTACCCCATTTCAGAGGCTTGAAGGACAACTTGTGGATTTATCCTCCTTGCTCTATGACCATCGTCTAGTTGATGCTTATCAAAACAGTTCTGATATCCTGCAGAGCACTATATTTACACAGCAGTACGTAGAACGTGTATTGTCTGCGGAAAGAGACAAGATGAAGTGTTGCACTATTGAATATAATCACCCCAAGCAGTCATCACAGGCGTTTGTTTACGGAGGGATCCTTCTGGCTGGATTTCTTGTCTACTCTTTGGTTATTTTCTTCTCTTCACCAGTCCGCTAATTCACATGCGTCCAGATGAAGATGACCCTGAATTCTCTCTAGTATGACAAGATGGCTAAGCATGATAGAATTTGAAACGATTGCTGAAAAGCTGTCACTGCGATATGCAAGGTGTGCCCGGCCTCATAAGGATGTCAATCTGCATTCAGCCATGACTAGACAATCTGCTGTATACGTTGGGGGCTTTCTCGGCACAGTTTTGTCTATGAGAATGTTTGCTCTTTAGTACCTACAGGCAACCCCATAGTTAGATGATTCATTCGGCCATCATAAATGGCCGATATAATCCAGAGGGGAGTTCAGATAAGGTTTAATGCAGGCCATTTACGGTTTTCCCCTTTGCCGGTATGTTACGAAAAAGCCTGGTATGTTAATAAAACCCACTAATCCTCATGAAAAAAAAGA] [-] EMBL CB667298 [AGAGAAATTCTATAAGAAGGTAACAACTATGCCAGAACCTTTCCCTCATGAGCTTGTTGAACGTTTGGAAGAATACCTGGATGTAAGTATTTATTTTTGTTACTGCACCAGTTTATTTTTAATTCAAAGTTCTATTTGCAGCTGATTCCTTTTTTTTACCCCATTTCAGAGGCTTGAAGGACAACTTGTGGATTTATCCTCCTTGCTCTATGACCATCGTCTAGTTGATGCTTATCAAAACAGTTCTGATATCCTGCAGAGCACTATATTTACACAGCAGTACGTAGAACGTGTATTGTCTGCGGAAAGAGACAAGATGAAGTGTTGCACTATTGAATATAATCACCCCAAGCAGTCATCACAGGCGTTTGTTTACGGAGGGATCCTTCTGGCTGGATTTCTTGTCTACTCTTTGGTTATTTTCTTCTCTTCACCAGTCCGCTAATTCACATGCGTCCAGATGAAGATGACCCTGAATTCTCTCTAGTATGACAAGATGGCTAAGCATGATAGAATTTGAAACGATTGCTGAAAAGCTGTCACTGCGATATGCAAGGTGTGCCCGGCCTCATAAGGATGTCAATCTGCATTCAGCCATGACTAGACAATCTGCTGTATACGTTGGGGGCTTTCTCGGCACAGTTTTGTCTATGAGAATGTTTGCTCTTTAGTACCTACAGGCAACCCCATAGTTAGATGATTCATTCGGCCATCATAAATGGCCGATATAATCCAGAGGGGAGTTCAGATAAGGTTTAATGCAGGCCATTTACGGTTTTCCCCTTTGCCGGTATGTTACGAAAAAGCCTGGTATGTTAATAAAACCCACTAATCCTCATGAAAAAAAAGA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_10404#0 AGGTAATAATTATTTCTGGTTCACATGCGCTGCATCAGCATGAAAAGTTAGCTGTTGCAG 60 consensus_10404#1 ------------------------------------------------------------ consensus_10404#0 TTTCCAAAGCAATGCGCAGCCATTCTATTCATGAAACGAAGACCGATGGTCGATTTCATG 120 consensus_10404#1 ------------------------------------------------------------ consensus_10404#0 TTCGTACCAAACCATATTTGGATGGAGCAATACTCAGAGAGGAAATGGAACGCTCTGCCG 180 consensus_10404#1 ------------------------------------------------------------ consensus_10404#0 ATGTGCTGTCCGCTGGTTTATTAGAAGTTGCAAATCCTTCCCTCTCAAGTAGGTTCTTCC 240 consensus_10404#1 ------------------------------------------------------------ consensus_10404#0 TGAAGCAGCATTGGTTGAACGAGCAAGACGACACGCATGATTCCATAAAACATAAGCCTA 300 consensus_10404#1 ------------------------------------------------------------ consensus_10404#0 TATGGGAATCTTACATGCCCAGAAATAAGAAAGAAAAACGAGGAACTGGAAAGAAGAAAC 360 consensus_10404#1 ------------------------------------------------------------ consensus_10404#0 ATGGAGATCTGTACCGGACTTATGGAACCAGAGTGATTCCAGTCTTTGTATTGTCATTGG 420 consensus_10404#1 ------------------------------------------------------------ consensus_10404#0 CTGATGTTGATGCTGAGCTTCTGATGGAAGAGGAAAATCTTGTTTGGACAAGCAAAGATG 480 consensus_10404#1 ------------------------------------------------------------ consensus_10404#0 TTGTCATTGTACTTGAGCATAACAATGAAAAGGTTCCTCTAAGTTATGTGTCAGAAACAA 540 consensus_10404#1 ------------------------------------------------------------ consensus_10404#0 CTAGACAGTTCGCTTTTCCGTCTCTAGCACAGCGCCACATCTTGGCAGGTTTAGCTTCAG 600 consensus_10404#1 ------------------------------------------------------------ consensus_10404#0 CAGTTGGAGGTCTGAGTGCACCATATGAAAGGGCATCACATATTCATGAAAGACCTGTTG 660 consensus_10404#1 ------------------------------------------------------------ consensus_10404#0 TGAATTGGTTGTGGGCTGCTGGATGCCATCCCTTTGGACCATTCTCAAACTCCTCTAAGA 720 consensus_10404#1 ------------------------------------------------------------ consensus_10404#0 TCAGTCAAATCCTTCAGGATGTTGCACTGAGAACTACAATTTATGCTCAAGTTGATGCTG 780 consensus_10404#1 ------------------------------------------------------------ consensus_10404#0 CTCTTCACAAAATAAGGGACACATCGGAGTTTGTTCAATCCTTTGCATCAGAGCATCTTA 840 consensus_10404#1 --------------AGAGAAATTCTATAAGAAGGTAACAACTATGC--CAGAACCTTT-- 42 ** ** * * * * * ** *** **** * * * consensus_10404#0 AGACGCCATTAGGAGAACCTGTTAAAGGTAAACAAAACAAGTCCAACACAGAGTTATGGG 900 consensus_10404#1 -----CCCTCATGAG--CTTGTTGAACGTTTGGAAGAATACCTGGATGTA-AGTATTTAT 94 ** * * *** * **** ** ** ** * * * * *** * consensus_10404#0 TAGAGAAATTCTATAAGAAGGTAACAACTATGCCAGAACCTTTCCCTCATGAGCTTGTTG 960 consensus_10404#1 TTTTGTTACTGCACCA---GTTTATTTTTAATTCAAAG---TTCTATTTGCAGCTGATT- 147 * * * * * * * * * ** ** * *** * **** ** consensus_10404#0 AACGTTTGGAAGAATACCTGGATAGGCTTGAAGGACAACTTGTGGATTTATCCTCCTTGC 1020 consensus_10404#1 -CCTTTTTTTTACCCCATTTCAGAGGCTTGAAGGACAACTTGTGGATTTATCCTCCTTGC 206 * *** * * ************************************* consensus_10404#0 TCTATGACCATCGTCTAGTTGATGCTTATCAAAACAGTTCTGATATCCTGCAGAGCACTA 1080 consensus_10404#1 TCTATGACCATCGTCTAGTTGATGCTTATCAAAACAGTTCTGATATCCTGCAGAGCACTA 266 ************************************************************ consensus_10404#0 TATTTACACAGCAGTACGTAGAACGTGTATTGTCTGCGGAAAGAGACAAGATGAAGTGTT 1140 consensus_10404#1 TATTTACACAGCAGTACGTAGAACGTGTATTGTCTGCGGAAAGAGACAAGATGAAGTGTT 326 ************************************************************ consensus_10404#0 GCACTATTGAATATAATCACCCCAAGCAGTCATCACAGGCGTTTGTTTACGGAGGGATCC 1200 consensus_10404#1 GCACTATTGAATATAATCACCCCAAGCAGTCATCACAGGCGTTTGTTTACGGAGGGATCC 386 ************************************************************ consensus_10404#0 TTCTGGCTGGATTTCTTGTCTACTCTTTGGTTATTTTCTTCTCTTCACCAGTCCGCTAAT 1260 consensus_10404#1 TTCTGGCTGGATTTCTTGTCTACTCTTTGGTTATTTTCTTCTCTTCACCAGTCCGCTAAT 446 ************************************************************ consensus_10404#0 TCACATGCGTCCAGATGAAGATGACCCTGAATTCTCTCTAGTATGACAAGATGGCTAAGC 1320 consensus_10404#1 TCACATGCGTCCAGATGAAGATGACCCTGAATTCTCTCTAGTATGACAAGATGGCTAAGC 506 ************************************************************ consensus_10404#0 ATGATAGAATTTGAAACGATTGCTGAAAAGCTGTCACTGCGATATGCAAGGTGTGCCCGG 1380 consensus_10404#1 ATGATAGAATTTGAAACGATTGCTGAAAAGCTGTCACTGCGATATGCAAGGTGTGCCCGG 566 ************************************************************ consensus_10404#0 CCTCATAAGGATGTCAATCTGCATTCAGCCATGACTAGACAATCTGCTGTATACGTTGGG 1440 consensus_10404#1 CCTCATAAGGATGTCAATCTGCATTCAGCCATGACTAGACAATCTGCTGTATACGTTGGG 626 ************************************************************ consensus_10404#0 GGCTTTCTCGGCACAGTTTTGTCTATGAGAATGTTTGCTCTTTAGTACCTACAGGCAACC 1500 consensus_10404#1 GGCTTTCTCGGCACAGTTTTGTCTATGAGAATGTTTGCTCTTTAGTACCTACAGGCAACC 686 ************************************************************ consensus_10404#0 CCATAGTTAGATGATTCATTCGGCCATCATAAATGGCCGATATAATCCAGAGGGGAGTTC 1560 consensus_10404#1 CCATAGTTAGATGATTCATTCGGCCATCATAAATGGCCGATATAATCCAGAGGGGAGTTC 746 ************************************************************ consensus_10404#0 AGATAAGGTCTAATGCAGGCCATTTACGGTTTTCCCCTTTGCCGGTATGTTACGAAAAA- 1619 consensus_10404#1 AGATAAGGTTTAATGCAGGCCATTTACGGTTTTCCCCTTTGCCGGTATGTTACGAAAAAG 806 ********* ************************************************* consensus_10404#0 CCTGGTATGTTAATAAAACCCA-TAATCCTCATGATGCAAACAATTGTTTTCCTTTCTCT 1678 consensus_10404#1 CCTGGTATGTTAATAAAACCCACTAATCCTCATGAAAAAAAAGA---------------- 850 ********************** ************ *** * consensus_10404#0 AAAAAAAAAAAAA 1691 consensus_10404#1 ------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||