These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_10408#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 6 consensus length = 1377 fasta sequence [ACACATGTGACATGTGCAGGTGCAGCGTACTCAGTGCTTCAGTATTGTAGCGAGTCGGAGTCAGTAGAGCAGGCAGCCAAGAAATGGCCGATGCGCACGGTCACCGCCGGCGGGTGGCCCTGCCGTGCGCGGTGCGCCTCCGGCTCTGCCTCCTCGAGGCCGCCATCGACGCGACGCAGCGCCGGGACGGCGCCA-TCAACCGTCCTCTCTTCTCCCTGTACGACCGGCGGGCGCCCGCCGACCCGCGGCCGGACGCCGCCGGCGTGAGCTCCACGGACGTCACCGTCGACGCGTCCCGCGGCCTCTGGGCGCGCGTCTTCACCCCTACCGCGCCGGAGCACGAGCACTCCTCGTCGTCGTCGACGACGACGCCGCGCCCCGTCATCGTCTACTTCCACGGCGGCGGCTTCGCGATGTTCTCGGCGGCCTCCCGCCCGTTCGACACCCACTGCCGCACGCTCTGCGCCGGGGTCGGCGCCGTCGTCGTCTCCGTCGACTACCGCCTCGCCCCCGAGCACCGGTTCCCCGCCGCGTACGACGACGGGGAGGCCGTCCTCCGCTACCTCGCCACCACCGGCCTCCGCGACGAGCACGGCGTCCCCGTGGACCTCTCCGCCTGCTTCCTCGCGGGAGACAGCGCCGGCGGCAACATCGCGCACCACGTGGCCCAGCGCTGGACGACGACGTCGGCGGCGACTCCGCCGCCTCCGTCAGACAACCCCGTCCACCTCGCCGGTGTGATACTCCTGGAGCCGTACTTCGGCGGCGAGGAGCGGACCAAGGCAGAGCGCGCGCTGGAGGGCGTGGCGCCGGTGGTGAAC-ATCCGGCGGTCGGACCGGTGGTGG-AGGGCGTTCTTG-CCGGA-GGGGGCCGA-CCGGAACCACCCGGCGGCGCAC-GTCACCGGCGACGCGGGGCCGGA-GCCCGAGCTGCAAGAAGCGTTCCCGCCGGCGATGGTGGTCGTCGGGGGCCTC-GACCCGCTG-CAAGACTGGGACCGGAGGTACGCCGGCATGCTGCGGCGGAAGGGGAAGGCGGTGCGGGTGGTGGAGTTCCCGGAGGCCATACACGCCTTCTACTTCTTCCCGGAGTTCGCCGGCGACATCCGGAAGCTCGTCGGTGAAATCAGGGCGTTCGTGGAAGACAGCATCATGTCCAAGCAATCCA-TTGCTTAGCTGTGATTACTCCAACTAGCTATAAATTATCGGAGTGGTTCGTATTTATATAATTGTAGTACTTATCTTTTGAGGGAACTTAATTATAGTACTTATAATGGAGTAATTACTCTCCATAGATGTTTTCGGTTCGTTCAAACT-TTTGAAATTTGCTGATTACTCACTCTGTTCAGTATTGAGTTTGACTAAATTGCATTAGCGTTACAAATTT] [+] EMBL AK070763 [ACACATGTGACATGTGCAGGTGCAGCGTACTCAGTGCTTCAGTATTGTAGCGAGTCGGAGTCAGTAGAGCAGGCAGCCAAGAAATGGCCGATGCGCACGGTCACCGCCGGCGGGTGGCCCTGCCGTGCGCGGTGCGCCTCCGGCTCTGCCTCCTCGAGGCCGCCATCGACGCGACGCAGCGCCGGGACGGCGCCA TCAACCGTCCTCTCTTCTCCCTGTACGACCGGCGGGCGCCCGCCGACCCGCGGCCGGACGCCGCCGGCGTGAGCTCCACGGACGTCACCGTCGACGCGTCCCGCGGCCTCTGGGCGCGCGTCTTCACCCCTACCGCGCCGGAGCACGAGCACTCCTCGTCGTCGTCGACGACGACGCCGCGCCCCGTCATCGTCTACTTCCACGGCGGCGGCTTCGCGATGTTCTCGGCGGCCTCCCGCCCGTTCGACACCCACTGCCGCACGCTCTGCGCCGGGGTCGGCGCCGTCGTCGTCTCCGTCGACTACCGCCTCGCCCCCGAGCACCGGTTCCCCGCCGCGTACGACGACGGGGAGGCCGTCCTCCGCTACCTCGCCACCACCGGCCTCCGCGACGAGCACGGCGTCCCCGTGGACCTCTCCGCCTGCTTCCTCGCGGGAGACAGCGCCGGCAGCAACATCGCGCACCACGTGGCCCAGCGCTGGACGACGACGTCGGCGGCGACTCCGCCGCCTCCGTCAGACAACCCCGTCCACCTCGCCGGTGTGATACTCCTGGAGCCGTACTTCGGCGGCGAGGAGCGGACCAAGGCAGAGCGCGCGCTGGAGGGCGTGGCGCCGGTGGTGAAC ATCCGGCGGTCGGACCGGTGGTGG AGGGCGTTCTTG CCGGA GGGGGCCGA CCGGAACCACCCGGCGGCGCAC GTCACCGGCGACGCGGGGCCGGA GCCCGAGCTGCAAGAAGCGTTCCCGCCGGCGATGGTGGTCGTCGGGGGCCTC GACCCGCTG CAAGACTGGGACCGGAGGTACGCCGGCATGCTGCGGCGGAAGGGGAAGGCGGTGCGGGTGGTGGAGTTCCCGGAGGCCATACACGCCTTCTACTTCTTCCCGGAGTTCGCCGGCGACATCCGGAAGCTCGTCGGTGAAATCAGGGCGTTCGTGGAAGACAGCATCATGTCCAAGCAATCCA TTGCTTAGCTGTGATTACTCCAACTAGCTATAAATTATCGGAGTGGTTCGTATTTATATAATTGTAGTACTTATCTTTTGAGGGAACTTAATTATAGTACTTATAATGGAGTAATTACTCTCCATAGATGTTTTCGGTTCGTTCAAACT TTTGAAATTTGCTGATTACTCACTCTGTTCAGTATTGAGTTTGACTAAATTG ] [+] EMBL AK099262 [ CGTACTCAGTGCTTCAGTATTGTAGCGAGTCGGAGTCAGTAGAGCAGGCAGCCAAGAAATGGCCGATGCGCACGGTCACCGCCGGCGGGTGGCCCTGCCGTGCGCGGTGCGCCTCCGGCTCTGCCTCCTCGAGGCCGCCATCGACGCGACGCAGCGCCGGGACGGCGCCA TCAACCGTCCTCTCTTCTCCCTGTACGACCGGCGGGCGCCCGCCGACCCGCGGCCGGACGCCGCCGGCGTGAGCTCCACGGACGTCACCGTCGACGCGTCCCGCGGCCTCTGGGCGCGCGTCTTCACCCCTACCGCGCCGGAGCACGAGCACTCCTCGTCGTCGTCGACGACGACGCCGCGCCCCGTCATCGTCTACTTCCACGGCGGCGGCTTCGCGATGTTCTCGGCGGCCTCCCGCCCGTTCGACACCCACTGCCGCACGCTCTGCGCCGGGGTCGGCGCCGTCGTCGTCTCCGTCGACTACCGCCTCGCCCCCGAGCACCGGTTCCCCGCCGCGTACGACGACGGGGAGGCCGTCCTCCGCTACCTCGCCACCACCGGCCTCCGCGACGAGCACGGCGTCCCCGTGGACCTCTCCGCCTGCTTCCTCGCGGGAGACAGCGCCGGCGGCAACATCGCGCACCACGTGGCCCAGCGCTGGACGACGACGTCGGCGGCGACTCCGCCGCCTCCGTCAGACAACCCCGTCCACCTCGCCGGTGTGATACTCCTGGAGCCGTACTTCGGCGGCGAGGAGCGGACCAAGGCAGAGCGCGCGCTGGAGGGCGTGGCGCCGGTGGTGAAC ATCCGGCGGTCGGACCGGTGGTGG AGGGTGTTCTTG CCGGA GGGGGCCGA CCGGAACCACCCGGCGGCGCAC GTCACCGGCGACGCGGGGCCGGA GCCCGAGCTGCAAGAAGCGTTCCCGCCGGCGATGGTGGTCGTCGGGGGCCTC GACCCGCTG CAAGACTGGGACCGGAGGTACGCCGGCATGCTGCGGCGGAAGGGGAAGGCGGTGCGGGTGGTGGAGTTCCCGGAGGCCATACACGCCTTCTACTTCTTCCCGGAGTTCGCCGGCGACATCCGGAAGCTCGTCGGTGAAATCAGGGCGTTCGTGGAAGACAGCATCATGTCCAAGCAATCCA TTGCTTAGCTGTGATTACTCCAACTAGCTATAAATTATCGGAGTGGTTCGTATTTATATAATTGTAGTACTTATCTTTTGAGGGAACTTAATTATAGTACTTATAATGGAGTAATTACTCTCCATAGATGTTTTCGGTTCGTTCAAACT TTTGAAATTTGCTGATTACTCACTCTGTTCAGTATTGAGTTTGACTAAATTGCATTAGCGTTACAAATTT] [+] EMBL AK106075 [ TTCAGTATTGTAGCGAGTCGGAGTCAGTAGAGCAGGCAGCCAAGAAATGGCCGATGCGCACGGTCACCGCCGGCGGGTGGCCCTGCCGTGCGCGGTGCGCCTCCGGCTCTGCCTCCTCGAGGCCGCCATCGACGCGACGCAGCGCCGGGACGGCGCCA TCAACCGTCCTCTCTTCTCCCTGTACGACCGGCGGGCGCCCGCCGACCCGCGGCCGGACGCCGCCGGCGTGAGCTCCACGGACGTCACCGTCGACGCGTCCCGCGGCCTCTGGGCGCGCGTCTTCACCCCTACCGCGCCGGAGCACGAGCACTCCTCGTCGTCGTCGACGACGACGCCGCGCCCCGTCATCGTCTACTTCCACGGCGGCGGCTTCGCGATGTTCTCGGCGGCCTCCCGCCCGTTCGACACCCACTGCCGCACGCTCTGCGCCGGGGTCGGCGCCGTCGTCGTCTCCGTCGACTACCGCCTCGCCCCCGAGCACCGGTTCCCCGCCGCGTACGACGACGGGGAGGCCGTCCTCCGCTACCTCGCCACCACCGGCCTCCGCGACGAGCACGGCGTCCCCGTGGACCTCTCCGCCTGCTTCCTCGCGGGAGACAGCGCCGGCGGCAACATCGCGCACCACGTGGCCCAGCGCTGGACGACGACGTCGGCGGCGACTCCGCCGCCTCCGTCAGACAACCCCGTCCACCTCGCCGGTGTGATACTCCTGGAGCCGTACTTCGGCGGCGAGGAGCGGACCAAGGCAGAGCGCGCGCTGGAGGGCGTGGCGCCGGTGGTGAAC ATCCGGCGGTCGGACCGGTGGTGG AGGGCGTTCTTG CCGGA GGGGGCCGA CCGGAACCACCCGGCGGCGCAC GTCACCGGCGACGCGGGGCCGGA GCCCGAGCTGCAAGAAGCGTTCCCGCCGGCGATGGTGGTCGTCGGGGGCCTC GACCCGCTG CAAGACTGGGACCGGAGGTACGCCGGCATGCTGCGGCGGAAGGGGAAGGCGGTGCGGGTGGTGGAGTTCCCGGAGGCCATACACGCCTTCTACTTCTTCCCGGAGTTCGCCGGCGACATCCGGAAGCTCGTCGGTGAAATCAGGGCGTTCGTGGAAGACAGCATCATGTCCAAGCAATCCA TTGCTTAGCTGTGATTACTCCAACTAGCTATAAATTATCGGAGTGGTTCGTATTTATATAATTGTAGTACTTATCTTTTGAGGGAACTTAATTATAGTACTTATAATGGAGTAATTACTCTCCATAGATGTTTTCGGTTCGTTCAAACT TTTGAAATTTGCTGATTACTCAC ] [+] EMBL C91665 [ AGTCAGTAGAGCAGGCAGCCAAGAAATGGCCGATGCGCACGGTCACCGCCGGCGGGTGGCCCTGCCGTGCGCGGTGCNCCTCCGGCTCTGCCTCCTCGAGGCCGCCATCGACGCGACGCAGCGCCGGGAC GNGCAATTCAACCGTCCTCTCTTCTCCCTGTACGACCGGCGGGCGCCCG NGACCCGCGGCCGGACGCCGCCGGGTTGAGCTCCACGGACGTCACCGTCGACGCGTCCCG GGCCTCTGGGCGCGCGTCTTCACCCCTACCGCGCCGGAGCACGAACACTCCTCGTCGTCGTCGAaaanaagcc ] [+] EMBL BQ907018 [ GGTGGTGTACTATCCGGCGGTCGGACCGGTGGTGGTAGGGCGTTCTTGTCCGGATGGGGNCCGATCCGGAACCACCCGGCGGCGCAC GTCACCGGCGACNCGGGGCCGGATGCCCGAGCTGCAAGAAGCGTTCCCGCCGGCGATGGTGGTCGTCGGGGGCCTCTGACCCGCTGTCAGGACTGGGACCGGAGGTACGCCGGCATGCTGCGGCAGAAGGGGAA GCGGTGCGGGTGGTGGAGTTCCCGGAGGCCATACACGCCTTCTACTTCTTCCCCGAGTTCGCCGGCGACATCCGGAAGCTCGTCGGTGAAATCAGGGCGTTCGTAGAAGAGAGCATCATGTCCAAGCAGTCCA TTGCTTAGCTGTGATTACTCCAACTAGCTATAAATTATCGGAGTAGTTCGTATTTATATAATTGTAGTACTTTTCTTTTGAGGGAACTTAATTATAGTACNTATAATGGAGTAATTACTCTCCGTAGATGTTTTCGGTTCGTTCAAACTCTTTGAAATTTGCTGATTAa ] [+] EMBL BI808398 [ GTGGTGAAC ATCCGGCGTTCGGACC GTTGTGG AGGGCGTTCTTG CCGGA GGGGCCGA CCGGAACCACCC GCGGCGCACAGTCACCGGCGAC CGGGGCCGGA GCCCGAGCTGCAAGAAGCGTTCCCGCCGGCGATGGTGGTCGTC GGGGCCTC GACCCGCTG CAGGACTGGGACCGGAGGTACGCCGGCATGCTGC GCAGAAGGGGAA GCGGTGCGGGTGGTGGAGTTCCCGGAGGCCATACACGCCTTCTACTTCTTCCCCGAGTTCGCCGGCGACATCCGGAAGCTCGTCGGTGAAATCAGGGCGTTCGTAGAAGAGAGCATCATGTCCAA CCCTCCACTTGCTTAGCTGTGATTACTCCAACTAGCTATAAATTATCGGAGTAGTTCGTATTTATATAATTGTAGTACTTTTCTTTTGAGGGAACTTAATTATAGTACTTATAATGGAGTAATTACTCTCCGTAGATGTTTTCGGTTCGTTCCACCT TTTGAAATTTGCTGATTAaaaa ] consensusID : consensus_10408#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 331 fasta sequence [GCCATACNCGCCTTCTACTTCTTCCCGGNGTTCGCCGGCGACATCCGGAAGCTCGTCGGTGAAATCAGGGCGTTCGTGGAAGACAGCATCATGTCCAAGCAATCCATTGCTTAGCTGTGATTACTCCAACTAGCTATAAATTATCGGAGTGGTTCGTATTTATATAATTGTAGTACTTATCTTTTGAGGGAACTTAATTATAGTACTTATAATGGAGTAATTACTNTCCATAGATGTTTTCGGTTCGTTCAAACTTTTGAAATTTGCTGATTACTCACTCTGTTCAGTATTGAGTTTGACTAAAAAAAAAAAAAAAAANANANAAAAAANA] [+] EMBL AU029663 [GCCATACNCGCCTTCTACTTCTTCCCGGNGTTCGCCGGCGACATCCGGAAGCTCGTCGGTGAAATCAGGGCGTTCGTGGAAGACAGCATCATGTCCAAGCAATCCATTGCTTAGCTGTGATTACTCCAACTAGCTATAAATTATCGGAGTGGTTCGTATTTATATAATTGTAGTACTTATCTTTTGAGGGAACTTAATTATAGTACTTATAATGGAGTAATTACTNTCCATAGATGTTTTCGGTTCGTTCAAACTTTTGAAATTTGCTGATTACTCACTCTGTTCAGTATTGAGTTTGACTAAAAAAAAAAAAAAAAANANANAAAAAANA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_10408#0 ACACATGTGACATGTGCAGGTGCAGCGTACTCAGTGCTTCAGTATTGTAGCGAGTCGGAG 60 consensus_10408#1 ------------------------------------------------------------ consensus_10408#0 TCAGTAGAGCAGGCAGCCAAGAAATGGCCGATGCGCACGGTCACCGCCGGCGGGTGGCCC 120 consensus_10408#1 ------------------------------------------------------------ consensus_10408#0 TGCCGTGCGCGGTGCGCCTCCGGCTCTGCCTCCTCGAGGCCGCCATCGACGCGACGCAGC 180 consensus_10408#1 ------------------------------------------------------------ consensus_10408#0 GCCGGGACGGCGCCATCAACCGTCCTCTCTTCTCCCTGTACGACCGGCGGGCGCCCGCCG 240 consensus_10408#1 ------------------------------------------------------------ consensus_10408#0 ACCCGCGGCCGGACGCCGCCGGCGTGAGCTCCACGGACGTCACCGTCGACGCGTCCCGCG 300 consensus_10408#1 ------------------------------------------------------------ consensus_10408#0 GCCTCTGGGCGCGCGTCTTCACCCCTACCGCGCCGGAGCACGAGCACTCCTCGTCGTCGT 360 consensus_10408#1 ------------------------------------------------------------ consensus_10408#0 CGACGACGACGCCGCGCCCCGTCATCGTCTACTTCCACGGCGGCGGCTTCGCGATGTTCT 420 consensus_10408#1 ------------------------------------------------------------ consensus_10408#0 CGGCGGCCTCCCGCCCGTTCGACACCCACTGCCGCACGCTCTGCGCCGGGGTCGGCGCCG 480 consensus_10408#1 ------------------------------------------------------------ consensus_10408#0 TCGTCGTCTCCGTCGACTACCGCCTCGCCCCCGAGCACCGGTTCCCCGCCGCGTACGACG 540 consensus_10408#1 ------------------------------------------------------------ consensus_10408#0 ACGGGGAGGCCGTCCTCCGCTACCTCGCCACCACCGGCCTCCGCGACGAGCACGGCGTCC 600 consensus_10408#1 ------------------------------------------------------------ consensus_10408#0 CCGTGGACCTCTCCGCCTGCTTCCTCGCGGGAGACAGCGCCGGCGGCAACATCGCGCACC 660 consensus_10408#1 ------------------------------------------------------------ consensus_10408#0 ACGTGGCCCAGCGCTGGACGACGACGTCGGCGGCGACTCCGCCGCCTCCGTCAGACAACC 720 consensus_10408#1 ------------------------------------------------------------ consensus_10408#0 CCGTCCACCTCGCCGGTGTGATACTCCTGGAGCCGTACTTCGGCGGCGAGGAGCGGACCA 780 consensus_10408#1 ------------------------------------------------------------ consensus_10408#0 AGGCAGAGCGCGCGCTGGAGGGCGTGGCGCCGGTGGTGAACATCCGGCGGTCGGACCGGT 840 consensus_10408#1 ------------------------------------------------------------ consensus_10408#0 GGTGGAGGGCGTTCTTGCCGGAGGGGGCCGACCGGAACCACCCGGCGGCGCACGTCACCG 900 consensus_10408#1 ------------------------------------------------------------ consensus_10408#0 GCGACGCGGGGCCGGAGCCCGAGCTGCAAGAAGCGTTCCCGCCGGCGATGGTGGTCGTCG 960 consensus_10408#1 ------------------------------------------------------------ consensus_10408#0 GGGGCCTCGACCCGCTGCAAGACTGGGACCGGAGGTACGCCGGCATGCTGCGGCGGAAGG 1020 consensus_10408#1 ------------------------------------------------------------ consensus_10408#0 GGAAGGCGGTGCGGGTGGTGGAGTTCCCGGAGGCCATACACGCCTTCTACTTCTTCCCGG 1080 consensus_10408#1 --------------------------------GCCATACNCGCCTTCTACTTCTTCCCGG 28 ******* ******************** consensus_10408#0 AGTTCGCCGGCGACATCCGGAAGCTCGTCGGTGAAATCAGGGCGTTCGTGGAAGACAGCA 1140 consensus_10408#1 NGTTCGCCGGCGACATCCGGAAGCTCGTCGGTGAAATCAGGGCGTTCGTGGAAGACAGCA 88 *********************************************************** consensus_10408#0 TCATGTCCAAGCAATCCATTGCTTAGCTGTGATTACTCCAACTAGCTATAAATTATCGGA 1200 consensus_10408#1 TCATGTCCAAGCAATCCATTGCTTAGCTGTGATTACTCCAACTAGCTATAAATTATCGGA 148 ************************************************************ consensus_10408#0 GTGGTTCGTATTTATATAATTGTAGTACTTATCTTTTGAGGGAACTTAATTATAGTACTT 1260 consensus_10408#1 GTGGTTCGTATTTATATAATTGTAGTACTTATCTTTTGAGGGAACTTAATTATAGTACTT 208 ************************************************************ consensus_10408#0 ATAATGGAGTAATTACTCTCCATAGATGTTTTCGGTTCGTTCAAACTTTTGAAATTTGCT 1320 consensus_10408#1 ATAATGGAGTAATTACTNTCCATAGATGTTTTCGGTTCGTTCAAACTTTTGAAATTTGCT 268 ***************** ****************************************** consensus_10408#0 GATTACTCACTCTGTTCAGTATTGAGTTTGACTAAATTGCATTAGCGTTACAAATTT--- 1377 consensus_10408#1 GATTACTCACTCTGTTCAGTATTGAGTTTGACTAAAAAAAAAAAAAAAAANANANAAAAA 328 ************************************ * * * * * consensus_10408#0 --- consensus_10408#1 ANA 331 |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||