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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_10412#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 6 consensus length = 1249 fasta sequence
[CGTCGTCCTCTTCTTCCCGACGCTTCATATAGTTGCCTCGTCGGCGTGCACGATCCCCCGCCGATCAAGCTAGCCGGCCAGCCAGCGAAGCAGCTCCGGTGCTACTTCTTGCCTATACCTCGCAACTTCTCTCATGGCGGCGGCGGGGAAGGAGCCGAGCAGGGTTCTGGTCATCGGCGGCACGGGCTACATCGGCCGGTACATCGTCGCCGCCAGCGCCCGGGAGGACCACCTCACCTCCGTCCTCGTCCGTGACCCGGCGCCGGCGGACCCTGCCAAGGCTGCCGTCCTCCAGGGCTTCCGGGACTCCGGAGCCACCCTCGTCAAGGGAGATCTTTATGGCCATCAAAGTTTGGTGGCAGCCATCAAATCTGCTGATGTGGTTATCTCGGCTGTGGGTTACGCGCAACTAGCAGATCAAACCCGTATTATTTCTGCTATTAAAGAAGCAGGGAATGTGAAGAGATTCTTCCCTTCAGAGTATGGTAATGATGTGGACCATGTACATGCAGTTGAGCCTGTGAAATCAGTGTATGCTACAAAAGCTCGTATAAGGCGTGTAATTGAGGCTGAGGGGATCCCATACACATATGTCTCCTCGAACTTCTTTGCTGGTCGTTTCTTGCCAAGTCTGGCACAGGCCTGGATCAAGGGCCTTCCAACCGACAAGGTTATCATCCTTGGTGATGGAAATGTAAAAGGAGTCTTTGCCACAGAGGAGGATGTGGGTACCTA-CACTATTAAAGCTGTCGATGATCCAAGAACCCTGAACAAGATCTTGTATCTCAGGCCATCAAGCAACATTTTGTCTCACAACGAGCTCGTCTCACTCTGGGAGAAGAAGGTTGGCAAGACATTTGATAGGGTGTACATCCCAGAAGATGAAGTCCTGAAGAAGATTCAAGAATCCCCAGCACCGTTGAATGTCGTACTGTCAATCAACCATTCTGTCTGGGTGAAGGGGGATCACACCAACTTTGAGATCGAGCCTTCATTTGGAGTTGAAGCTACTGAACTTTACCCCGATGTGAAGTACACCACTGTGGATGAATACCTGAACAGGTTCCTTTGAAATCTGTACAAATCCTACAAGGCTCGAATATATAAAATATGGAATAGATATTAGACAGTGAAAGTTGTGTTTTTCAATAAGCAAAATTTAATTTTGTACAAAACGCTCTAGAGTGTAACTTATTGAGAACAGTGATGCTGGTGCTGTCTTTGCTGCCACCGCCAGATTCAAAAAAAA]
[+] EMBL AK103043 [CGTCGTCCTCTTCTTCCCGACGCTTCATATAGTTGCCTCGTCGGCGTGCACGATCCCCCGCCGATCAAGCTAGCCGGCCAGCCAGCGAAGCAGCTCCGGTGCTACTTCTTGCCTATACCTCGCAACTTCTCTCATGGCGGCGGCGGGGAAGGAGCCGAGCAGGGTTCTGGTCATCGGCGGCACGGGCTACATCGGCCGGTACATCGTCGCCGCCAGCGCCCGGGAGGACCACCTCACCTCCGTCCTCGTCCGTGACCCGGCGCCGGCGGACCCTGCCAAGGCTGCCGTCCTCCAGGGCTTCCGGGACTCCGGAGCCACCCTCGTCAAGGGAGATCTTTATGGCCATCAAAGTTTGGTGGCAGCCATCAAATCTGCTGATGTGGTTATCTCGGCTGTGGGTTACGCGCAACTAGCAGATCAAACCCGTATTATTTCTGCTATTAAAGAAGCAGGGAATGTGAAGAGATTCTTCCCTTCAGAGTATGGTAATGATGTGGACCATGTACATGCAGTTGAGCCTGTGAAATCAGTGTATGCTACAAAAGCTCGTATAAGGCGTGTAATTGAGGCTGAGGGGATCCCATACACATATGTCTCCTCGAACTTCTTTGCTGGTCGTTTCTTGCCAAGTCTGGCACAGGCCTGGATCAAGGGCCTTCCAACCGACAAGGTTATCATCCTTGGTGATGGAAATGTAAAAGGAGTCTTTGCCACAGAGGAGGATGTGGGTACCTA CACTATTAAAGCTGTCGATGATCCAAGAACCCTGAACAAGATCTTGTATCTCAGGCCATCAAGCAACATTTTGTCTCACAACGAGCTCGTCTCACTCTGGGAGAAGAAGGTTGGCAAGACATTTGATAGGGTGTACATCCCAGAAGATGAAGTCCTGAAGAAGATTCAAGAATCCCCAGCACCGTTGAATGTCGTACTGTCAATCAACCATTCTGTCTGGGTGAAGGGGGATCACACCAACTTTGAGATCGAGCCTTCATTTGGAGTTGAAGCTACTGAACTTTACCCCGATGTGAAGTACACCACTGTGGATGAATACCTGAACAGGTTCCTTTGAAATCTGTACAAATCCTACAAGGCTCGAATATATAAAATATGGAATAGATATTAGACAGTGAAAGTTGTGTTTTTCAATAAGCAAAATTTAATTTTGTACAAAACGCTCTAGAGTGTAACTTATTGAGAACAGTGATGCTGGTGCTGTCTTTGC ]
[+] EMBL BF430672 [ TTCTTCCCGACGCTTCATACAGTTGCCTCGTCGGCGTGCACGATCCCCCGCCGATCAAGCTAGCCGGCCAGCCAGCGAAGCAGCTCCGGTGCTACTTCTTGCCTATACCTCGCAACTTCTCTCATGGCCGCGGCGGGGAAGGAGCGGAGCAGGGTTCTGGTCATCGGCGGCACGGGCTACATCGGCCGGTACATCGTCGCCGCCAGCGCCCGGGAGGGCCACCTCACCTCCGTCCTCGTCCGTGACCCGGCGCCGGCGGACCCTGCCAAGGCTGCCGTCCTCCAGGGCTTCCGGGACTCCGGAGCCACCCTCGTCAAGGGAGATCTTTATGGCCATCAAAGTTTGGTGGCAGCCATCAAATCTGCTGATGTGGTTATCTCGGCTGTGGGTTACGCGCAACTAGCAGATCAAACCCGTATTATTTCTGCTATTAAAGAAGCAGGGAATGTGAAGAGATTCTTCCCTTCAGAGTATGGTAATGATGTGGACCGTGTACATGCGGTTGAGCCTGTGAAATCAGTGTATGCTACAAAAGCTCGCATAAGGCGTGTAATTGAGGCTGAGGGGATCCCATACACATATGTCTCCTCGAACTTCTTTGCTGGTCGTTTCTTGCCAAGTCTGGCACAGGCCTGGATCAAGGGCCTTCCAACCGACA ]
[+] EMBL CF308567 [ ATATAGTTGCCTCGTCGGCGTGCACGATCCCCCGCCGATCAAGCTAGCCGGCCAGCCAGCGAAGCAGCTCCGGTGCTACTTCTTGCCTATACCTCGCAACTTCTCTCATGGCGGCGGCGGGGAAGGAGCCGAGCAGGGTTCTGGTCATCGGCGGCACGGGCTACATCGGCCGGTACATCGTCGCCGCCAGCGCCCGGGAGGACCACCTCACCTCCGTCCTCGTCCGTGACCCGGCGCCGGCGGACCCTGCCAAGGCTGCCGTCCTCCAGGGCTTCCGGGACTCCGGAGCCACCCTCGTCAAGGGAGATCTTTATGGCCATCAAAGTTTGGTGGCAGCCATCAAATCTGCTGATGTGGTTATCTCGGCTGTGGGTTACGCGCAACTAGCAGATCAAACCCGTATTATTTCTGCTATTAAAGAAGCAGGGAATGTGAAGAGATTCTTCCCTTCAGAGTATGGTAATGATGTGGACCATGTACATGCAGTTGAGCCTGTGAAATCAGTGTATGCTACAAAAGCTCGTATAAGGCGTGTAATTGAGGCTGAGGGGATCCCATACACATATGTCTCCTCGAACTTCTTTGCTGGTCGTTTCTTGCC ]
[+] EMBL AK059428 [ GGCGGCGGCGGGGAAGGAGCCGAGCAGGGTTCTGGTCATCGGCGGCACGGGCTACATCGGCCGGTACATCGTCGCCGCCAGCGCCCGGGAGGACCACCTCACCTCCGTCCTCGTCCGTGACCCGGCGCCGGCGGACCCTGCCAAGGCTGCCGACCTCCAGGGCTTCCGGGACTCCGGAGCCACCCTCGTCAAGGGAGATCTTTATGGCCATCAAAGTTTGGTGGCAGCCATCAAATCTGCTGATGTGGTTATCTCGGCTGTGGGTTACGCGCAACTAGCAGATCAAACCCGTATTATTTCTGCTATTAAAGAAGCAGGGAATGTGAAGAGATTCTTCCCTTCAGAGTATGGTAATGATGTGGACCATGTACATGCAGTTGAGCCTGTGAAATCAGTGTATGCTACAAAAGCTCGTATAAGGCGTGTAATTGAGGCTGAGGGGATCCCATACACATATGTCTCCTCGAACTTCTTTGCTGGTCGTTTCTTGCCAAGTCTGGCACAGGCCTGGATCAAGGGCCTTCCAACCGACAAGGTTATCATCCTTGGTGATGGAAATGTAAAAGGAGTCTTTGCCACAGAGGAGGATGTGGGTACCTA CACTATTAAAGCTGTCGATGATCCAAGAACCCTGAACAAGATCTTGTATCTCAGGCCATCAAGCAACATTTTGTCTCACAACGAGCTCGTCTCACTCTGGGAGAAGAAGGTTGGCAAGACATTTGATAGGGTGTACATCCCAGAAGATGAAGTCCTGAAGAAGATTCAAGAATCCCCAGCACCGTTGAATGTCGTACTGTCAATCAACCATTCTGTCTGGGTGAAGGGGGATCACACCAACTTTGAGATCGAGCCTTCATTTGGAGTTGAAGCTACTGAACTTTACCCCGATGTGAAGTACACCACTGTGGATGAATACCTGAACAGGTTCCTTTGAAATCTGTACAAATCCTACAAGGCTCGAATATATAAAATATGGAATAGATATTAGACAGTGAAAGTTGTGTTTTTCAATAAGCAAAATTTAATTTTGTACAAAACGCTCTAGAGTGTAACTTATTGAGAACAGTGATGCTGGTGCTGTCTTTGCTGCCACCGCCA ]
[-] EMBL CF308566 [ TGGTGATGGAAATGTAAAAGGAGTCTTTGCCACAGAGGAGGATGTGGGTACCTACCACTATTAAAGCTGTCGATGATCCAAGAACCCTGAACAAGATCTTGTATCTCAGGCCATCAAGCAACATTTTGTCTCACAACGAGCTCGTCTCACTCTGGGAGAAGAAGGTTGGCAAGACATTTGATAGGGTGTACATCCCAGAAGATGAAGTCCTGAAGAAGATTCAAGAATCCCCAGCACCGTTGAATGTCGTACTGTCAATCAACCATTCTGTCTGGGTGAAGGGGGATCACACCAACTTTGAGATCGAGCCTTCATTTGGAGTTGAAGCTACTGAACTTTACCCCGATGTGAAGTACACCACTGTGGATGAATACCTGAACAGGTTCCTTTGAAATCTGTACAAATCCTACAAGGCTCGAATATATAAAATATGGAATAGATATTAGACAGTGAAAGTTGTGTTTTTCAATAAGCAAAATTTAATTTTGTACAAAACGCTCTAGAGTGTAACTTATTGAGAACAGTGATGCTGGTGCTGTCTTTGCTGCCACCGCCAGATTCAAAAAAAA]
[+] EMBL BI800970 [ CTACAAGGCTCAAATATAT ATATGGAATAGATATTAGACAGTG AAGTTGTGTTTTTCAATAAGCAAAATTTAATTTTGTAC AAACGCTCTAGAGTGTAACTTATTGAGAACAGTGATGCTGGTGCTGTCTTTGCTGCCACAGCCAaaaaa ]
consensusID : consensus_10412#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 509 fasta sequence
[GGAGTCTTTGCCACAGAGGAGGATGTGGGTACCTACACTATTAAAGCTGTCGATGATCCAAGAACCCTGAACAAGATCTTGTATCTCAGGCCATCAAGCAACATTTTGTCTCACAACGAGCTCGTCTCACTCTGGGAGAAGAAGGTTGGCAAGACATTTGATAGGGTGTACATCCCAGAAGATGAAGTCCTGAAGAAGATTCAAGGTGAGAATCAGCCATGTTCTCTCAAGTGCAATACTTATGTTCAGTAGATGCTTATCCCTATTTTTTCCTGACATTTGACTTTAATTCAGAATCCCCAGCACCGTTGAATGTCGTACTGTCAATCAACCATTCTGTCTGGGTGAAGGGGGATCACACCAACTTTGAGATCGAGCCTTCATTTGGAGTTGAAGCTACTGAACTTTACCCCGATGTGAAGTACACCACTGTGGATGAATACCTGAACAGGTTCCTTTGAAATCTGTACAAATCTTATTGAGAACAGTGATGCTGGTGCTGTCTTTGC]
[-] EMBL CF324654 [GGAGTCTTTGCCACAGAGGAGGATGTGGGTACCTACACTATTAAAGCTGTCGATGATCCAAGAACCCTGAACAAGATCTTGTATCTCAGGCCATCAAGCAACATTTTGTCTCACAACGAGCTCGTCTCACTCTGGGAGAAGAAGGTTGGCAAGACATTTGATAGGGTGTACATCCCAGAAGATGAAGTCCTGAAGAAGATTCAAGGTGAGAATCAGCCATGTTCTCTCAAGTGCAATACTTATGTTCAGTAGATGCTTATCCCTATTTTTTCCTGACATTTGACTTTAATTCAGAATCCCCAGCACCGTTGAATGTCGTACTGTCAATCAACCATTCTGTCTGGGTGAAGGGGGATCACACCAACTTTGAGATCGAGCCTTCATTTGGAGTTGAAGCTACTGAACTTTACCCCGATGTGAAGTACACCACTGTGGATGAATACCTGAACAGGTTCCTTTGAAATCTGTACAAATCTTATTGAGAACAGTGATGCTGGTGCTGTCTTTGC]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_10412#0 CGTCGTCCTCTTCTTCCCGACGCTTCATATAGTTGCCTCGTCGGCGTGCACGATCCCCCG 60
consensus_10412#1 ------------------------------------------------------------
consensus_10412#0 CCGATCAAGCTAGCCGGCCAGCCAGCGAAGCAGCTCCGGTGCTACTTCTTGCCTATACCT 120
consensus_10412#1 ------------------------------------------------------------
consensus_10412#0 CGCAACTTCTCTCATGGCGGCGGCGGGGAAGGAGCCGAGCAGGGTTCTGGTCATCGGCGG 180
consensus_10412#1 ------------------------------------------------------------
consensus_10412#0 CACGGGCTACATCGGCCGGTACATCGTCGCCGCCAGCGCCCGGGAGGACCACCTCACCTC 240
consensus_10412#1 ------------------------------------------------------------
consensus_10412#0 CGTCCTCGTCCGTGACCCGGCGCCGGCGGACCCTGCCAAGGCTGCCGTCCTCCAGGGCTT 300
consensus_10412#1 ------------------------------------------------------------
consensus_10412#0 CCGGGACTCCGGAGCCACCCTCGTCAAGGGAGATCTTTATGGCCATCAAAGTTTGGTGGC 360
consensus_10412#1 ------------------------------------------------------------
consensus_10412#0 AGCCATCAAATCTGCTGATGTGGTTATCTCGGCTGTGGGTTACGCGCAACTAGCAGATCA 420
consensus_10412#1 ------------------------------------------------------------
consensus_10412#0 AACCCGTATTATTTCTGCTATTAAAGAAGCAGGGAATGTGAAGAGATTCTTCCCTTCAGA 480
consensus_10412#1 ------------------------------------------------------------
consensus_10412#0 GTATGGTAATGATGTGGACCATGTACATGCAGTTGAGCCTGTGAAATCAGTGTATGCTAC 540
consensus_10412#1 ------------------------------------------------------------
consensus_10412#0 AAAAGCTCGTATAAGGCGTGTAATTGAGGCTGAGGGGATCCCATACACATATGTCTCCTC 600
consensus_10412#1 ------------------------------------------------------------
consensus_10412#0 GAACTTCTTTGCTGGTCGTTTCTTGCCAAGTCTGGCACAGGCCTGGATCAAGGGCCTTCC 660
consensus_10412#1 ------------------------------------------------------------
consensus_10412#0 AACCGACAAGGTTATCATCCTTGGTGATGGAAATGTAAAAGGAGTCTTTGCCACAGAGGA 720
consensus_10412#1 ----------------------------------------GGAGTCTTTGCCACAGAGGA 20
********************
consensus_10412#0 GGATGTGGGTACCTACACTATTAAAGCTGTCGATGATCCAAGAACCCTGAACAAGATCTT 780
consensus_10412#1 GGATGTGGGTACCTACACTATTAAAGCTGTCGATGATCCAAGAACCCTGAACAAGATCTT 80
************************************************************
consensus_10412#0 GTATCTCAGGCCATCAAGCAACATTTTGTCTCACAACGAGCTCGTCTCACTCTGGGAGAA 840
consensus_10412#1 GTATCTCAGGCCATCAAGCAACATTTTGTCTCACAACGAGCTCGTCTCACTCTGGGAGAA 140
************************************************************
consensus_10412#0 GAAGGTTGGCAAGACATTTGATAGGGTGTACATCCCAGAAGATGAAGTCCTGAAGAAGAT 900
consensus_10412#1 GAAGGTTGGCAAGACATTTGATAGGGTGTACATCCCAGAAGATGAAGTCCTGAAGAAGAT 200
************************************************************
consensus_10412#0 TCAAG------------------------------------------------------- 905
consensus_10412#1 TCAAGGTGAGAATCAGCCATGTTCTCTCAAGTGCAATACTTATGTTCAGTAGATGCTTAT 260
*****
consensus_10412#0 ----------------------------------AATCCCCAGCACCGTTGAATGTCGTA 931
consensus_10412#1 CCCTATTTTTTCCTGACATTTGACTTTAATTCAGAATCCCCAGCACCGTTGAATGTCGTA 320
**************************
consensus_10412#0 CTGTCAATCAACCATTCTGTCTGGGTGAAGGGGGATCACACCAACTTTGAGATCGAGCCT 991
consensus_10412#1 CTGTCAATCAACCATTCTGTCTGGGTGAAGGGGGATCACACCAACTTTGAGATCGAGCCT 380
************************************************************
consensus_10412#0 TCATTTGGAGTTGAAGCTACTGAACTTTACCCCGATGTGAAGTACACCACTGTGGATGAA 1051
consensus_10412#1 TCATTTGGAGTTGAAGCTACTGAACTTTACCCCGATGTGAAGTACACCACTGTGGATGAA 440
************************************************************
consensus_10412#0 TACCTGAACAGGTTCCTTTGAAATCTGTACAAATCCTACAAGGCTCGAATATATAAAATA 1111
consensus_10412#1 TACCTGAACAGGTTCCTTTGAAATCTGTACAAATCTTATTGAGAACAGTGATGCTGGTGC 500
*********************************** ** * * **
consensus_10412#0 TGGAATAGATATTAGACAGTGAAAGTTGTGTTTTTCAATAAGCAAAATTTAATTTTGTAC 1171
consensus_10412#1 TGTCTTTGC--------------------------------------------------- 509
** * *
consensus_10412#0 AAAACGCTCTAGAGTGTAACTTATTGAGAACAGTGATGCTGGTGCTGTCTTTGCTGCCAC 1231
consensus_10412#1 ------------------------------------------------------------
consensus_10412#0 CGCCAGATTCAAAAAAAA 1249
consensus_10412#1 ------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||