These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_10414#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1000 fasta sequence [AAGAAGAAGCCGCCGCGNATGNATGCAGCAGCAGATGGCCATGCGGCGGGGGCCCNCGCCGCGGTTGCCGCCGNGCTGGNANTGCGACCACCGAGCAGATCCAAAAGTATTTGGATGAAAATAAACAGCTAATTTTGGCCATCCTGGAAAATCAAAACCTAGGGAAGTTGGCTGAATGTGCTCAGTACCAAGCTCAGCTTCAAAAGAATCTCTTGTATCTGGCTGCCATTGCAGATGCCCAACCACCTCAGAATCCAGGAAGTCGCCCTCAGATGATGCAGCCTGGTGCTACCCCAGGTGCTGGGCATTACATGTCCCAAGTACCGATGTTCCCTCCAAGAACTCCCTTAACCCCACAACAGATGCAAGAGCAGCAGCAGCAGCAACTCCAGCAACAGCAAGCTCAGGCTCTAGCCTTCCCCGGCCAGATGCTAATGAGACCAGGTACTGTCAATGGCATGCAATCTATCCCAGTTGCTGACCCTGCTCGCGCAGCCGATCTTCAGACGGCAGCACCGGGCTCGGTAGATGGCCGAGGAAACAAGCAGGATGCAACCTCGGAGCCTTCCGGGACCGAGAGCCACAAGAGTGCGGGAGCAGATAACGACGCAGGCGGTGACATAGCGGAGAAGTCCTGAGCTAGCACAAGTGTTAGGATGAATAATGCCATGTATACTAGCAATGAAAAAGAAAGAAAGCCCCCTGCCTCGTGGATCACAAGTAGTCCTTACTCATCACCCCCTGTGTTTTAGAAGGCTCGTCTTATCGGTGTTGTAGAACAAAACTTTTAGATTGATGATGATGTAACCTATCAGAGATTCTTATCTCATCCTACAATTGTTGTAGCTATTATGGAATAATTTTACCAGCCTGAGAGAGTTTTTAAAAAAAAATGCCTGCTAATATAATGGTTAGTGTGATGAACTTAAAAAGGCGGTTGTATTTTGCAAGATTATATTCTTGTACTCCTTTTTTCTTTTTATAAGGCGTACTATAAAGT] [+] EMBL C27655 [AAGAAGAAGCCGCCGCGNATGNATGCAGCAGCAGATGGCCATGCGGCGGGGGCCCNCGCCGCGGTTGCCGCCGNGCTGGNANTGCGACCACCGAGCAGATCCAAAAGTATTTGGATGAAAATAAACAGCTAATTTTGGCCATCCTGGAAAATCAAAACCTAGGGAAGTTGGCTGAATGTGCTCAGTACCAAGCTCAGCTTCAAAAGAATCTCTTGTATCTGGCTGCCATTGCAGATGCCCAACCACCTCAGAATCCAGGAAGTCGCCCTCAGATGATGCAGCCTGGTGCTANCCCAGGTGCTGGGCATTANATGTTCCAAGTACC ] [+] EMBL AU092592 [ AAGAATCTCTTGTATCTGGCTGCCATTGCAGATGCCCAACCACCTCAGAATCCAGGAAGTCGCCCTCAGATGATGCAGCCTGGTGCTACCCCAGGTGCTGGGCATTACATGTCCCAAGTACCGATGTTCCCTCCAAGAACTCCCTTAACCCCACAACAGATGCAAGAGCAGCAGCAGCAGCAACTCCAGCAACAGCAAGCTCAGGCTCTAGCCTTCCCCGGCCAGATGCTAATGAGACCAGGTACTGTCAATGGCATGCAATCTATCCCAGTTGCTGACCCTGCTCGCGCAGCCGATCTTCAGACGGCAGCACCGGGCTCGGTAGATGGCCGAGGAAACAAGCAGGATGCAACCTCGGAGCCTTCCGGGACCGAGAGCCACAAGAGTGCGGGAGCAGATAACGACGCAGGCGGTGACATAGCGGAGAAGTCCTGAGCTAGCACAAGTGTTAGGATGAATAATGCCATGTATACTAGCAATGAAAAAGAAAGAAAGCCCCCTGCCTCGTGGATCACAAGTAGTCCTTACTCATCACCCCCTGTGTTTTAGAAGGCTCGTCTTATCGGTGTTGTAGAACAAAACTTTTAGATTGATGATGATGTAACCTATCAGAGATTCTTATCTCATCCTACAATTGTTGTAGCTATTATGGAATAATTTTACCAGCCTGAGAGAGTTTTTAAAAAAAAA ] [-] EMBL CB628447 [ CCTGGTGCTACCCCAGGTGCTGGGCATTACATGTCCCAAGTACCGATGTTCCCTCCAAGAACTCCCTTAACCCCACACCAGATGCAAGAGCAGCAGCAGCAGCAATTCCAGCAACAGCAAGCTCAGGCTTTAGCCTTCCCCGGCCAGATGTTAATGAGACCAGGTACTGTCAATGGCATGCAATTTATCCCAGTTGCTGACCCTGCTCGCGCAGCCGATTTTCAGACGGCAGCACCGGGCTCGGTAGATGGCCGAGGAAACAAGCAGGATGCACCCTCGGACCCTTCCGGGACCGAGAGCCACAAGAGTGCGGGAGCAGATAACGACGCAGGCGGTGACATAGCGGAGAAGTCCTGAGCTAGCACAAGTGTTAGGATGAATAATGCCATGTATACTAGCAATGAAAAAGAAAGAAAGCCCCCTCCCTCGTGGATCACAAGTAGTCCTTACTCATCCCCCCCTGTGTTTTAGAAGGCTCGTCTTATCGGTGTTGTAGAACAAAACTTTTAGATTGATGATGATGTACCCTATCAGAGATTTTTATCTCATCCTACAATTGTTGTAGCTATTATGGAATAATTTTCCCACCCTGAGAAAGTTTTTACTTCTGTTTGCCTGCTAATATAATGGTTAGTGTGATGAACTTAAAAAGGCGGTTGTATTTTGCAAGATTATATTCTTGTACTCCTTTTTTCTTTTTATAAGGCGTACTATAAAGT] consensusID : consensus_10414#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 782 fasta sequence [CCTCGCACCAAGAAACTGAGGCAAGAAGAAGAAGAAGAAGAAGCCGCCGCGGCGAGATGCAGCAGCAGATGGCCATGCCGGCGGGGGCCGCCGCCGCCGCGGTGCCGCCGGCGGCCGGCATCACCACCGAGCAGATCCAAAAGTATTTGGATGAAAATAAACAGCTAATTTTGGCCATCCTGGAAAATCAAAACCTAGGGAAGTTGGCTGAATGTGCTCAGTAAGTTGCTTGCTAAACATCTTTGAAAGGCTTTATTGCTGGATTACTATATGAAATGCTTCTAGGTGGCTGCCATATCTTGACCATTTTGTTTCATGTAAATGACCTGAAATTGGAAATCTGCAATTGTTGACGGCTTGGAAGATGTTTTCAGAACTACATTTGAAGTCATTTGATCTTATTCTGTTAAAATCATGCACTAAGGATTGCACACAAGTGCCAAGTTTTGATAGTTGTGTCTTCTGAAGTTTACTTTACCATTTGGAGGATCTAAATGACAGTGGTCAATAAGTTTTGGCATCTGAAATTTACTTTACCATTTGGAGGATCTAAATGACAGTGGCCAATATGTTTTGGCATCTGAAGTTTAGTTGACTTGCATGAAGTATATGCTTATTCACTGTCTTCCCTACTGAGGACCTATAATATGGAGAATAAAATCTTGTTTCTGTGCCTGATTTGATCATCTGGAACACCTTGCTTAATTACTCTATTGGTCTATCCAGTGTATGATATCGTATATATCTGTTGGCCTGTGCTATGCAATGGAAAGTTAGATTTT] [+] EMBL CB628446 [CCTCGCACCAAGAAACTGAGGCAAGAAGAAGAAGAAGAAGAAGCCGCCGCGGCGAGATGCAGCAGCAGATGGCCATGCCGGCGGGGGCCGCCGCCGCCGCGGTGCCGCCGGCGGCCGGCATCACCACCGAGCAGATCCAAAAGTATTTGGATGAAAATAAACAGCTAATTTTGGCCATCCTGGAAAATCAAAACCTAGGGAAGTTGGCTGAATGTGCTCAGTAAGTTGCTTGCTAAACATCTTTGAAAGGCTTTATTGCTGGATTACTATATGAAATGCTTCTAGGTGGCTGCCATATCTTGACCATTTTGTTTCATGTAAATGACCTGAAATTGGAAATCTGCAATTGTTGACGGCTTGGAAGATGTTTTCAGAACTACATTTGAAGTCATTTGATCTTATTCTGTTAAAATCATGCACTAAGGATTGCACACAAGTGCCAAGTTTTGATAGTTGTGTCTTCTGAAGTTTACTTTACCATTTGGAGGATCTAAATGACAGTGGTCAATAAGTTTTGGCATCTGAAATTTACTTTACCATTTGGAGGATCTAAATGACAGTGGCCAATATGTTTTGGCATCTGAAGTTTAGTTGACTTGCATGAAGTATATGCTTATTCACTGTCTTCCCTACTGAGGACCTATAATATGGAGAATAAAATCTTGTTTCTGTGCCTGATTTGATCATCTGGAACACCTTGCTTAATTACTCTATTGGTCTATCCAGTGTATGATATCGTATATATCTGTTGGCCTGTGCTATGCAATGGAAAGTTAGATTTT] [+] EMBL CF324692 [ caagaagAAGAAGAAGAAGAAGAAGAAGCCGCCGCGGCGAGATGCAGCAGCAGATGGCCATGCCGGCGGGGGCCGCCGCCGCCGCGGTGCCGCCGGCGGCCGGCATCACCACCGAGCAGATCCAAAAGTATTTGGATGAAAATAAACAGCTAATTTTGGCCATCCTGGAAAATCAAAACCTAGGGAAGTTGGCTGAATGTGCTCAGTAAGTTGCTTGCTAAACATCTTTGAAAGGTTTTATTGCTGGATTACTATATGAAATGCTTCTAGGTGGCTGCCATATCTTGACCATTTTGTTTCATGTAAATGACCTGAAATTGGAAATCTGCAATTGTTGACGGCTTGGAAGATGTTTTCAGAACTACATTTGAAGTCATTTGATCTTATTCTGTTAAAATCATGCACT ] consensusID : consensus_10414#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 710 fasta sequence [CAAATCCACCCTCGACCAAGAAACTGAGGCAAGAAGAAGAAGAAGAAGAAGCCGCCGCGGCGAGATGCAGCAGCAGATGGCCATGCCGGCGGGGGCCGCCGCCGCCGCGGTGCCGCCGGCGGCCGGCATCACCACCGAGCAGATCCAAAAGTATTTGGATGAAAATAAACAGCTAATTTTGGCCATCCTGGAAAATCAAAACCTAGGGAAGTTGGCTGAATGTGCTCAGTACCAAGCTCAGCTTCAAAAGAATCTCTTGTATCTGGCTGCCATTGCAGATGCCCAACCACCTCAGAATCCAGGAAGTCGNCCTCAGATGATTGCAGCCTGGGTGCTACCCCAGGTGGNTTGGGCAATTACATGTCCCAAGTANCCGATGGTTCCCTNCAAGGAACTTCCTTTACCCCACAACAGATGCAAGAGCAGCAGCAGCAGCAACTCCAGCAACAGCAAGCTCAGGCTCTAGCCTTCCCCGGCCAGATGCTAATGAGACCAGGTACTGTCAATGGCATGCAATCTATCCCAGTTGCTGACCCTGCTCGCGCAGCCGATCTTCAGACGGCAGCACCGGGCTCGGTAGATGGCCGAGGAAACAAGCAGGATGCAACCTCGGAGCCTTCCGGGACCGAGAGCCACAAGAGTGCGGGAGCAGATAACGACGCAGGCGGTGACATAGCGGAGAAGTCCTGAGCTAGCACAAGTGTTAGGAT] [+] EMBL OSS14440A [CAAATCCACCCTCGACCAAGAAACTGAGGCAAGAAGAAGAAGAAGAAGAAGCCGCCGCGGCGAGATGCAGCAGCAGATGGCCATGCCGGCGGGGGCCGCCGCCGCCGCGGTGCCGCCGGCGGCCGGCATCACCACCGAGCAGATCCAAAAGTATTTGGATGAAAATAAACAGCTAATTTTGGCCATCCTGGAAAATCAAAACCTAGGGAAGTTGGCTGAATGTGCTCAGTACCAAGCTCAGCTTCAAAAGAATCTCTTGTATCTGGCTGCCATTGCAGATGCCCAACCACCTCAGAATCCAGGAAGTCGNCCTCAGATGATTGCAGCCTGGGTGCTACCCCAGGTGGNTTGGGCAATTACATGTCCCAAGTANCCGATGGTTCCCTNCAAGGAACTTCCTTTA ] [+] EMBL BP185008 [ acgagGGCGAGATGCAGCAGCAGATGGCCATGCCGGCGGGGGCCGCCGCCGCCGCGGTGCCGCCGGCGGCCGGCATCACCACCGAGCAGATCCAAAAGTATTTGGATGAAAATAAACAGCTAATTTTGGCCATCCTGGAAAATCAAAACCTAGGGAAGTTGGCTGAATGTGCTCAGTACCAAGCTCAGCTTCAAAAGAATCTCTTGTATCTGGCTGCCATTGCAGATGCCCAACCACCTCAGAATCCAGGAAGTCGCCCTCAGATGA TGCAGCCT GGTGCTACCCCAGGTG CTGGGC ATTACATGTCCCAAGTA CCGAT GTTCCCTCCAA GAACTCCCTTAACCCCACAACAGATGCAAGAGCAGCAGCAGCAGCAACTCCAGCAACAGCAAGCTCAGGCTCTAGCCTTCCCCGGCCAGATGCTAATGAGACCAGGTACTGTCAATGGCATGCAATCTATCCCAGTTGCTGACCCTGCTCGCGCAGCCGATCTTCAGACGGCAGCACCGGGCTCGGTAGATGGCCGAGGAAACAAGCAGGATGCAACCTCGGAGCCTTCCGGGACCGAGAGCCACAAGAGTGCGGGAGCAGATAACGACGCAGGCGGTGACATAGCGGAGAAGTCCTGAGCTAGCACAAGTGTTAGGAT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_10414#0 ------------------------------------------AAGAAGAAGCCGCCGCGN 18 consensus_10414#2 CAAATCCACCCTCGACCAAGAAACTGAGGCAAGAAGAAGAAGAAGAAGAAGCCGCCGCGG 60 consensus_10414#1 --------CCTCGCACCAAGAAACTGAGGCAAGAAGAAGAAGAAGAAGAAGCCGCCGCGG 52 ***************** consensus_10414#0 ATGNATGCAGCAGCAGATGGCCATGC-GGCGGGGGCCCNCGCCGCGGT--TGCCGCCGNG 75 consensus_10414#2 CGAGATGCAGCAGCAGATGGCCATGCCGGCGGGGGCCGCCGCCGCCGCGGTGCCGCCGG- 119 consensus_10414#1 CGAGATGCAGCAGCAGATGGCCATGCCGGCGGGGGCCGCCGCCGCCGCGGTGCCGCCGG- 111 ********************** ********** ****** * ******** consensus_10414#0 CTGGNANTGCGACCACCGAGCAGATCCAAAAGTATTTGGATGAAAATAAACAGCTAATTT 135 consensus_10414#2 CGGCCGGCATCACCACCGAGCAGATCCAAAAGTATTTGGATGAAAATAAACAGCTAATTT 179 consensus_10414#1 CGGCCGGCATCACCACCGAGCAGATCCAAAAGTATTTGGATGAAAATAAACAGCTAATTT 171 * * ************************************************* consensus_10414#0 TGGCCATCCTGGAAAATCAAAACCTAGGGAAGTTGGCTGAATGTGCTCAGTACCAAGCT- 194 consensus_10414#2 TGGCCATCCTGGAAAATCAAAACCTAGGGAAGTTGGCTGAATGTGCTCAGTACCAAGCT- 238 consensus_10414#1 TGGCCATCCTGGAAAATCAAAACCTAGGGAAGTTGGCTGAATGTGCTCAGTAAGTTGCTT 231 **************************************************** *** consensus_10414#0 ------CAGCTTCAAAAGAATCTCTTGTATCTGGCTGCCATTGCAGATGCCC------AA 242 consensus_10414#2 ------CAGCTTCAAAAGAATCTCTTGTATCTGGCTGCCATTGCAGATGCCC------AA 286 consensus_10414#1 GCTAAACATCTTTGAAAGGCTTTATTGC--TGGATTACTATATGAAATGCTTCTAGGTGG 289 ** *** **** * * *** * * * ** * **** consensus_10414#0 CCACCTCAGAAT--CCAGGAAGTCGCCCTCAGATGAT-GCAGCCTGG-----TGCTACCC 294 consensus_10414#2 CCACCTCAGAAT--CCAGGAAGTCGNCCTCAGATGATTGCAGCCTGGG----TGCTACCC 340 consensus_10414#1 CTGCCATATCTTGACCATTTTGTTTCATGTAAATGACCTGAAATTGGAAATCTGCAATTG 349 * ** * * *** ** * **** * *** *** * consensus_10414#0 CAGGTG--CTGGGCA-TTACATGTCCCAAGTACC-GATG-TTCCCTCCAAG--AACTCCC 347 consensus_10414#2 CAGGTGGNTTGGGCAATTACATGTCCCAAGTANCCGATGGTTCCCTNCAAGG-AACTTCC 399 consensus_10414#1 TTGACGGCTTGGAAG---ATGTTTTCAGAACTACATTTGAAGTCATTTGATCTTATTCTG 406 * * *** * * * * * * ** * * * * * consensus_10414#0 TTAACCCCACA-ACAGATGCAAGAGCAGCAGCAGCAGCAACTCCAGCAACAGCAAGCTCA 406 consensus_10414#2 TTTACCCCACA-ACAGATGCAAGAGCAGCAGCAGCAGCAACTCCAGCAACAGCAAGCTCA 458 consensus_10414#1 TTAAAATCATGCACTAAGGATTGCACACAAGTGCCA--AGTTTTGATAGTTGTGTCTTCT 464 ** * ** ** * * * ** ** ** * * * * ** consensus_10414#0 GGCTCTAGCCTTCCC--CGGCCAGATGCTAATGAGACCAGGTACTGT-CAATGGCAT--G 461 consensus_10414#2 GGCTCTAGCCTTCCC--CGGCCAGATGCTAATGAGACCAGGTACTGT-CAATGGCAT--G 513 consensus_10414#1 GAAGTTTACTTTACCATTTGGAGGATCTAAATGACAGTGGTCAATAAGTTTTGGCATCTG 524 * * * ** ** * *** ***** * * * * ****** * consensus_10414#0 CAATCTATC---CCAGTTGCTGACCCTGCTCGCGCAGCCGATCTTCAGACGGCAGCACCG 518 consensus_10414#2 CAATCTATC---CCAGTTGCTGACCCTGCTCGCGCAGCCGATCTTCAGACGGCAGCACCG 570 consensus_10414#1 AAATTTACTTTACCATTTGGAGGATCTAAATG-ACAGT-GGCCAATATGTTTTGGCATCT 582 *** ** *** *** * ** * *** * * * *** * consensus_10414#0 GGCTCGGTAGATGGCCGAGGAAACAAGCAGGATGCAACCTCGGAGCCTTCCGGGACCGAG 578 consensus_10414#2 GGCTCGGTAGATGGCCGAGGAAACAAGCAGGATGCAACCTCGGAGCCTTCCGGGACCGAG 630 consensus_10414#1 GAAGTT-TAGTTGACTT--GCATGAAGTAT-ATGCTTATTCACTGTCTTCCCT-ACTGAG 637 * *** ** * * * *** * **** ** * ***** ** *** consensus_10414#0 AGCCACAAGAGTGCGGGAGCAGATAACGACGCAGGCGGTGACATAGCGGAGAAGTCCTGA 638 consensus_10414#2 AGCCACAAGAGTGCGGGAGCAGATAACGACGCAGGCGGTGACATAGCGGAGAAGTCCTGA 690 consensus_10414#1 GACCTATAATATGGAGAATAAAATCTTGTTTCTGTGCCTGATTTGATCATCTGGAAC--A 695 ** * ** * * * ** * * * *** * * * * consensus_10414#0 GCTAGCACAAGTGTTAGGATGAATAATGCCATGTATACTAGCAATGAAAAAGAAAGAAAG 698 consensus_10414#2 GCTAGCACAAGTGTTAGGAT---------------------------------------- 710 consensus_10414#1 CCTTGCTTAATTACTCTATTGGTCTATCCAGTGTATGATATCGT----ATATATCTGTTG 751 ** ** ** * * * consensus_10414#0 CCCCCTGCCTCGTGGATCACAAGTAGTCCTTACTCATCACCCCCTGTGTTTTAGAAGGCT 758 consensus_10414#2 ------------------------------------------------------------ consensus_10414#1 GCCTGTGCTATGCAATGGAAAGTTAGATTTT----------------------------- 782 consensus_10414#0 CGTCTTATCGGTGTTGTAGAACAAAACTTTTAGATTGATGATGATGTAACCTATCAGAGA 818 consensus_10414#2 ------------------------------------------------------------ consensus_10414#1 ------------------------------------------------------------ consensus_10414#0 TTCTTATCTCATCCTACAATTGTTGTAGCTATTATGGAATAATTTTACCAGCCTGAGAGA 878 consensus_10414#2 ------------------------------------------------------------ consensus_10414#1 ------------------------------------------------------------ consensus_10414#0 GTTTTTAAAAAAAAATGCCTGCTAATATAATGGTTAGTGTGATGAACTTAAAAAGGCGGT 938 consensus_10414#2 ------------------------------------------------------------ consensus_10414#1 ------------------------------------------------------------ consensus_10414#0 TGTATTTTGCAAGATTATATTCTTGTACTCCTTTTTTCTTTTTATAAGGCGTACTATAAA 998 consensus_10414#2 ------------------------------------------------------------ consensus_10414#1 ------------------------------------------------------------ consensus_10414#0 GT 1000 consensus_10414#2 -- consensus_10414#1 -- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||