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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_10414#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1000 fasta sequence
[AAGAAGAAGCCGCCGCGNATGNATGCAGCAGCAGATGGCCATGCGGCGGGGGCCCNCGCCGCGGTTGCCGCCGNGCTGGNANTGCGACCACCGAGCAGATCCAAAAGTATTTGGATGAAAATAAACAGCTAATTTTGGCCATCCTGGAAAATCAAAACCTAGGGAAGTTGGCTGAATGTGCTCAGTACCAAGCTCAGCTTCAAAAGAATCTCTTGTATCTGGCTGCCATTGCAGATGCCCAACCACCTCAGAATCCAGGAAGTCGCCCTCAGATGATGCAGCCTGGTGCTACCCCAGGTGCTGGGCATTACATGTCCCAAGTACCGATGTTCCCTCCAAGAACTCCCTTAACCCCACAACAGATGCAAGAGCAGCAGCAGCAGCAACTCCAGCAACAGCAAGCTCAGGCTCTAGCCTTCCCCGGCCAGATGCTAATGAGACCAGGTACTGTCAATGGCATGCAATCTATCCCAGTTGCTGACCCTGCTCGCGCAGCCGATCTTCAGACGGCAGCACCGGGCTCGGTAGATGGCCGAGGAAACAAGCAGGATGCAACCTCGGAGCCTTCCGGGACCGAGAGCCACAAGAGTGCGGGAGCAGATAACGACGCAGGCGGTGACATAGCGGAGAAGTCCTGAGCTAGCACAAGTGTTAGGATGAATAATGCCATGTATACTAGCAATGAAAAAGAAAGAAAGCCCCCTGCCTCGTGGATCACAAGTAGTCCTTACTCATCACCCCCTGTGTTTTAGAAGGCTCGTCTTATCGGTGTTGTAGAACAAAACTTTTAGATTGATGATGATGTAACCTATCAGAGATTCTTATCTCATCCTACAATTGTTGTAGCTATTATGGAATAATTTTACCAGCCTGAGAGAGTTTTTAAAAAAAAATGCCTGCTAATATAATGGTTAGTGTGATGAACTTAAAAAGGCGGTTGTATTTTGCAAGATTATATTCTTGTACTCCTTTTTTCTTTTTATAAGGCGTACTATAAAGT]
[+] EMBL C27655 [AAGAAGAAGCCGCCGCGNATGNATGCAGCAGCAGATGGCCATGCGGCGGGGGCCCNCGCCGCGGTTGCCGCCGNGCTGGNANTGCGACCACCGAGCAGATCCAAAAGTATTTGGATGAAAATAAACAGCTAATTTTGGCCATCCTGGAAAATCAAAACCTAGGGAAGTTGGCTGAATGTGCTCAGTACCAAGCTCAGCTTCAAAAGAATCTCTTGTATCTGGCTGCCATTGCAGATGCCCAACCACCTCAGAATCCAGGAAGTCGCCCTCAGATGATGCAGCCTGGTGCTANCCCAGGTGCTGGGCATTANATGTTCCAAGTACC ]
[+] EMBL AU092592 [ AAGAATCTCTTGTATCTGGCTGCCATTGCAGATGCCCAACCACCTCAGAATCCAGGAAGTCGCCCTCAGATGATGCAGCCTGGTGCTACCCCAGGTGCTGGGCATTACATGTCCCAAGTACCGATGTTCCCTCCAAGAACTCCCTTAACCCCACAACAGATGCAAGAGCAGCAGCAGCAGCAACTCCAGCAACAGCAAGCTCAGGCTCTAGCCTTCCCCGGCCAGATGCTAATGAGACCAGGTACTGTCAATGGCATGCAATCTATCCCAGTTGCTGACCCTGCTCGCGCAGCCGATCTTCAGACGGCAGCACCGGGCTCGGTAGATGGCCGAGGAAACAAGCAGGATGCAACCTCGGAGCCTTCCGGGACCGAGAGCCACAAGAGTGCGGGAGCAGATAACGACGCAGGCGGTGACATAGCGGAGAAGTCCTGAGCTAGCACAAGTGTTAGGATGAATAATGCCATGTATACTAGCAATGAAAAAGAAAGAAAGCCCCCTGCCTCGTGGATCACAAGTAGTCCTTACTCATCACCCCCTGTGTTTTAGAAGGCTCGTCTTATCGGTGTTGTAGAACAAAACTTTTAGATTGATGATGATGTAACCTATCAGAGATTCTTATCTCATCCTACAATTGTTGTAGCTATTATGGAATAATTTTACCAGCCTGAGAGAGTTTTTAAAAAAAAA ]
[-] EMBL CB628447 [ CCTGGTGCTACCCCAGGTGCTGGGCATTACATGTCCCAAGTACCGATGTTCCCTCCAAGAACTCCCTTAACCCCACACCAGATGCAAGAGCAGCAGCAGCAGCAATTCCAGCAACAGCAAGCTCAGGCTTTAGCCTTCCCCGGCCAGATGTTAATGAGACCAGGTACTGTCAATGGCATGCAATTTATCCCAGTTGCTGACCCTGCTCGCGCAGCCGATTTTCAGACGGCAGCACCGGGCTCGGTAGATGGCCGAGGAAACAAGCAGGATGCACCCTCGGACCCTTCCGGGACCGAGAGCCACAAGAGTGCGGGAGCAGATAACGACGCAGGCGGTGACATAGCGGAGAAGTCCTGAGCTAGCACAAGTGTTAGGATGAATAATGCCATGTATACTAGCAATGAAAAAGAAAGAAAGCCCCCTCCCTCGTGGATCACAAGTAGTCCTTACTCATCCCCCCCTGTGTTTTAGAAGGCTCGTCTTATCGGTGTTGTAGAACAAAACTTTTAGATTGATGATGATGTACCCTATCAGAGATTTTTATCTCATCCTACAATTGTTGTAGCTATTATGGAATAATTTTCCCACCCTGAGAAAGTTTTTACTTCTGTTTGCCTGCTAATATAATGGTTAGTGTGATGAACTTAAAAAGGCGGTTGTATTTTGCAAGATTATATTCTTGTACTCCTTTTTTCTTTTTATAAGGCGTACTATAAAGT]
consensusID : consensus_10414#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 782 fasta sequence
[CCTCGCACCAAGAAACTGAGGCAAGAAGAAGAAGAAGAAGAAGCCGCCGCGGCGAGATGCAGCAGCAGATGGCCATGCCGGCGGGGGCCGCCGCCGCCGCGGTGCCGCCGGCGGCCGGCATCACCACCGAGCAGATCCAAAAGTATTTGGATGAAAATAAACAGCTAATTTTGGCCATCCTGGAAAATCAAAACCTAGGGAAGTTGGCTGAATGTGCTCAGTAAGTTGCTTGCTAAACATCTTTGAAAGGCTTTATTGCTGGATTACTATATGAAATGCTTCTAGGTGGCTGCCATATCTTGACCATTTTGTTTCATGTAAATGACCTGAAATTGGAAATCTGCAATTGTTGACGGCTTGGAAGATGTTTTCAGAACTACATTTGAAGTCATTTGATCTTATTCTGTTAAAATCATGCACTAAGGATTGCACACAAGTGCCAAGTTTTGATAGTTGTGTCTTCTGAAGTTTACTTTACCATTTGGAGGATCTAAATGACAGTGGTCAATAAGTTTTGGCATCTGAAATTTACTTTACCATTTGGAGGATCTAAATGACAGTGGCCAATATGTTTTGGCATCTGAAGTTTAGTTGACTTGCATGAAGTATATGCTTATTCACTGTCTTCCCTACTGAGGACCTATAATATGGAGAATAAAATCTTGTTTCTGTGCCTGATTTGATCATCTGGAACACCTTGCTTAATTACTCTATTGGTCTATCCAGTGTATGATATCGTATATATCTGTTGGCCTGTGCTATGCAATGGAAAGTTAGATTTT]
[+] EMBL CB628446 [CCTCGCACCAAGAAACTGAGGCAAGAAGAAGAAGAAGAAGAAGCCGCCGCGGCGAGATGCAGCAGCAGATGGCCATGCCGGCGGGGGCCGCCGCCGCCGCGGTGCCGCCGGCGGCCGGCATCACCACCGAGCAGATCCAAAAGTATTTGGATGAAAATAAACAGCTAATTTTGGCCATCCTGGAAAATCAAAACCTAGGGAAGTTGGCTGAATGTGCTCAGTAAGTTGCTTGCTAAACATCTTTGAAAGGCTTTATTGCTGGATTACTATATGAAATGCTTCTAGGTGGCTGCCATATCTTGACCATTTTGTTTCATGTAAATGACCTGAAATTGGAAATCTGCAATTGTTGACGGCTTGGAAGATGTTTTCAGAACTACATTTGAAGTCATTTGATCTTATTCTGTTAAAATCATGCACTAAGGATTGCACACAAGTGCCAAGTTTTGATAGTTGTGTCTTCTGAAGTTTACTTTACCATTTGGAGGATCTAAATGACAGTGGTCAATAAGTTTTGGCATCTGAAATTTACTTTACCATTTGGAGGATCTAAATGACAGTGGCCAATATGTTTTGGCATCTGAAGTTTAGTTGACTTGCATGAAGTATATGCTTATTCACTGTCTTCCCTACTGAGGACCTATAATATGGAGAATAAAATCTTGTTTCTGTGCCTGATTTGATCATCTGGAACACCTTGCTTAATTACTCTATTGGTCTATCCAGTGTATGATATCGTATATATCTGTTGGCCTGTGCTATGCAATGGAAAGTTAGATTTT]
[+] EMBL CF324692 [ caagaagAAGAAGAAGAAGAAGAAGAAGCCGCCGCGGCGAGATGCAGCAGCAGATGGCCATGCCGGCGGGGGCCGCCGCCGCCGCGGTGCCGCCGGCGGCCGGCATCACCACCGAGCAGATCCAAAAGTATTTGGATGAAAATAAACAGCTAATTTTGGCCATCCTGGAAAATCAAAACCTAGGGAAGTTGGCTGAATGTGCTCAGTAAGTTGCTTGCTAAACATCTTTGAAAGGTTTTATTGCTGGATTACTATATGAAATGCTTCTAGGTGGCTGCCATATCTTGACCATTTTGTTTCATGTAAATGACCTGAAATTGGAAATCTGCAATTGTTGACGGCTTGGAAGATGTTTTCAGAACTACATTTGAAGTCATTTGATCTTATTCTGTTAAAATCATGCACT ]
consensusID : consensus_10414#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 710 fasta sequence
[CAAATCCACCCTCGACCAAGAAACTGAGGCAAGAAGAAGAAGAAGAAGAAGCCGCCGCGGCGAGATGCAGCAGCAGATGGCCATGCCGGCGGGGGCCGCCGCCGCCGCGGTGCCGCCGGCGGCCGGCATCACCACCGAGCAGATCCAAAAGTATTTGGATGAAAATAAACAGCTAATTTTGGCCATCCTGGAAAATCAAAACCTAGGGAAGTTGGCTGAATGTGCTCAGTACCAAGCTCAGCTTCAAAAGAATCTCTTGTATCTGGCTGCCATTGCAGATGCCCAACCACCTCAGAATCCAGGAAGTCGNCCTCAGATGATTGCAGCCTGGGTGCTACCCCAGGTGGNTTGGGCAATTACATGTCCCAAGTANCCGATGGTTCCCTNCAAGGAACTTCCTTTACCCCACAACAGATGCAAGAGCAGCAGCAGCAGCAACTCCAGCAACAGCAAGCTCAGGCTCTAGCCTTCCCCGGCCAGATGCTAATGAGACCAGGTACTGTCAATGGCATGCAATCTATCCCAGTTGCTGACCCTGCTCGCGCAGCCGATCTTCAGACGGCAGCACCGGGCTCGGTAGATGGCCGAGGAAACAAGCAGGATGCAACCTCGGAGCCTTCCGGGACCGAGAGCCACAAGAGTGCGGGAGCAGATAACGACGCAGGCGGTGACATAGCGGAGAAGTCCTGAGCTAGCACAAGTGTTAGGAT]
[+] EMBL OSS14440A [CAAATCCACCCTCGACCAAGAAACTGAGGCAAGAAGAAGAAGAAGAAGAAGCCGCCGCGGCGAGATGCAGCAGCAGATGGCCATGCCGGCGGGGGCCGCCGCCGCCGCGGTGCCGCCGGCGGCCGGCATCACCACCGAGCAGATCCAAAAGTATTTGGATGAAAATAAACAGCTAATTTTGGCCATCCTGGAAAATCAAAACCTAGGGAAGTTGGCTGAATGTGCTCAGTACCAAGCTCAGCTTCAAAAGAATCTCTTGTATCTGGCTGCCATTGCAGATGCCCAACCACCTCAGAATCCAGGAAGTCGNCCTCAGATGATTGCAGCCTGGGTGCTACCCCAGGTGGNTTGGGCAATTACATGTCCCAAGTANCCGATGGTTCCCTNCAAGGAACTTCCTTTA ]
[+] EMBL BP185008 [ acgagGGCGAGATGCAGCAGCAGATGGCCATGCCGGCGGGGGCCGCCGCCGCCGCGGTGCCGCCGGCGGCCGGCATCACCACCGAGCAGATCCAAAAGTATTTGGATGAAAATAAACAGCTAATTTTGGCCATCCTGGAAAATCAAAACCTAGGGAAGTTGGCTGAATGTGCTCAGTACCAAGCTCAGCTTCAAAAGAATCTCTTGTATCTGGCTGCCATTGCAGATGCCCAACCACCTCAGAATCCAGGAAGTCGCCCTCAGATGA TGCAGCCT GGTGCTACCCCAGGTG CTGGGC ATTACATGTCCCAAGTA CCGAT GTTCCCTCCAA GAACTCCCTTAACCCCACAACAGATGCAAGAGCAGCAGCAGCAGCAACTCCAGCAACAGCAAGCTCAGGCTCTAGCCTTCCCCGGCCAGATGCTAATGAGACCAGGTACTGTCAATGGCATGCAATCTATCCCAGTTGCTGACCCTGCTCGCGCAGCCGATCTTCAGACGGCAGCACCGGGCTCGGTAGATGGCCGAGGAAACAAGCAGGATGCAACCTCGGAGCCTTCCGGGACCGAGAGCCACAAGAGTGCGGGAGCAGATAACGACGCAGGCGGTGACATAGCGGAGAAGTCCTGAGCTAGCACAAGTGTTAGGAT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_10414#0 ------------------------------------------AAGAAGAAGCCGCCGCGN 18
consensus_10414#2 CAAATCCACCCTCGACCAAGAAACTGAGGCAAGAAGAAGAAGAAGAAGAAGCCGCCGCGG 60
consensus_10414#1 --------CCTCGCACCAAGAAACTGAGGCAAGAAGAAGAAGAAGAAGAAGCCGCCGCGG 52
*****************
consensus_10414#0 ATGNATGCAGCAGCAGATGGCCATGC-GGCGGGGGCCCNCGCCGCGGT--TGCCGCCGNG 75
consensus_10414#2 CGAGATGCAGCAGCAGATGGCCATGCCGGCGGGGGCCGCCGCCGCCGCGGTGCCGCCGG- 119
consensus_10414#1 CGAGATGCAGCAGCAGATGGCCATGCCGGCGGGGGCCGCCGCCGCCGCGGTGCCGCCGG- 111
********************** ********** ****** * ********
consensus_10414#0 CTGGNANTGCGACCACCGAGCAGATCCAAAAGTATTTGGATGAAAATAAACAGCTAATTT 135
consensus_10414#2 CGGCCGGCATCACCACCGAGCAGATCCAAAAGTATTTGGATGAAAATAAACAGCTAATTT 179
consensus_10414#1 CGGCCGGCATCACCACCGAGCAGATCCAAAAGTATTTGGATGAAAATAAACAGCTAATTT 171
* * *************************************************
consensus_10414#0 TGGCCATCCTGGAAAATCAAAACCTAGGGAAGTTGGCTGAATGTGCTCAGTACCAAGCT- 194
consensus_10414#2 TGGCCATCCTGGAAAATCAAAACCTAGGGAAGTTGGCTGAATGTGCTCAGTACCAAGCT- 238
consensus_10414#1 TGGCCATCCTGGAAAATCAAAACCTAGGGAAGTTGGCTGAATGTGCTCAGTAAGTTGCTT 231
**************************************************** ***
consensus_10414#0 ------CAGCTTCAAAAGAATCTCTTGTATCTGGCTGCCATTGCAGATGCCC------AA 242
consensus_10414#2 ------CAGCTTCAAAAGAATCTCTTGTATCTGGCTGCCATTGCAGATGCCC------AA 286
consensus_10414#1 GCTAAACATCTTTGAAAGGCTTTATTGC--TGGATTACTATATGAAATGCTTCTAGGTGG 289
** *** **** * * *** * * * ** * ****
consensus_10414#0 CCACCTCAGAAT--CCAGGAAGTCGCCCTCAGATGAT-GCAGCCTGG-----TGCTACCC 294
consensus_10414#2 CCACCTCAGAAT--CCAGGAAGTCGNCCTCAGATGATTGCAGCCTGGG----TGCTACCC 340
consensus_10414#1 CTGCCATATCTTGACCATTTTGTTTCATGTAAATGACCTGAAATTGGAAATCTGCAATTG 349
* ** * * *** ** * **** * *** *** *
consensus_10414#0 CAGGTG--CTGGGCA-TTACATGTCCCAAGTACC-GATG-TTCCCTCCAAG--AACTCCC 347
consensus_10414#2 CAGGTGGNTTGGGCAATTACATGTCCCAAGTANCCGATGGTTCCCTNCAAGG-AACTTCC 399
consensus_10414#1 TTGACGGCTTGGAAG---ATGTTTTCAGAACTACATTTGAAGTCATTTGATCTTATTCTG 406
* * *** * * * * * * ** * * * * *
consensus_10414#0 TTAACCCCACA-ACAGATGCAAGAGCAGCAGCAGCAGCAACTCCAGCAACAGCAAGCTCA 406
consensus_10414#2 TTTACCCCACA-ACAGATGCAAGAGCAGCAGCAGCAGCAACTCCAGCAACAGCAAGCTCA 458
consensus_10414#1 TTAAAATCATGCACTAAGGATTGCACACAAGTGCCA--AGTTTTGATAGTTGTGTCTTCT 464
** * ** ** * * * ** ** ** * * * * **
consensus_10414#0 GGCTCTAGCCTTCCC--CGGCCAGATGCTAATGAGACCAGGTACTGT-CAATGGCAT--G 461
consensus_10414#2 GGCTCTAGCCTTCCC--CGGCCAGATGCTAATGAGACCAGGTACTGT-CAATGGCAT--G 513
consensus_10414#1 GAAGTTTACTTTACCATTTGGAGGATCTAAATGACAGTGGTCAATAAGTTTTGGCATCTG 524
* * * ** ** * *** ***** * * * * ****** *
consensus_10414#0 CAATCTATC---CCAGTTGCTGACCCTGCTCGCGCAGCCGATCTTCAGACGGCAGCACCG 518
consensus_10414#2 CAATCTATC---CCAGTTGCTGACCCTGCTCGCGCAGCCGATCTTCAGACGGCAGCACCG 570
consensus_10414#1 AAATTTACTTTACCATTTGGAGGATCTAAATG-ACAGT-GGCCAATATGTTTTGGCATCT 582
*** ** *** *** * ** * *** * * * *** *
consensus_10414#0 GGCTCGGTAGATGGCCGAGGAAACAAGCAGGATGCAACCTCGGAGCCTTCCGGGACCGAG 578
consensus_10414#2 GGCTCGGTAGATGGCCGAGGAAACAAGCAGGATGCAACCTCGGAGCCTTCCGGGACCGAG 630
consensus_10414#1 GAAGTT-TAGTTGACTT--GCATGAAGTAT-ATGCTTATTCACTGTCTTCCCT-ACTGAG 637
* *** ** * * * *** * **** ** * ***** ** ***
consensus_10414#0 AGCCACAAGAGTGCGGGAGCAGATAACGACGCAGGCGGTGACATAGCGGAGAAGTCCTGA 638
consensus_10414#2 AGCCACAAGAGTGCGGGAGCAGATAACGACGCAGGCGGTGACATAGCGGAGAAGTCCTGA 690
consensus_10414#1 GACCTATAATATGGAGAATAAAATCTTGTTTCTGTGCCTGATTTGATCATCTGGAAC--A 695
** * ** * * * ** * * * *** * * * *
consensus_10414#0 GCTAGCACAAGTGTTAGGATGAATAATGCCATGTATACTAGCAATGAAAAAGAAAGAAAG 698
consensus_10414#2 GCTAGCACAAGTGTTAGGAT---------------------------------------- 710
consensus_10414#1 CCTTGCTTAATTACTCTATTGGTCTATCCAGTGTATGATATCGT----ATATATCTGTTG 751
** ** ** * * *
consensus_10414#0 CCCCCTGCCTCGTGGATCACAAGTAGTCCTTACTCATCACCCCCTGTGTTTTAGAAGGCT 758
consensus_10414#2 ------------------------------------------------------------
consensus_10414#1 GCCTGTGCTATGCAATGGAAAGTTAGATTTT----------------------------- 782
consensus_10414#0 CGTCTTATCGGTGTTGTAGAACAAAACTTTTAGATTGATGATGATGTAACCTATCAGAGA 818
consensus_10414#2 ------------------------------------------------------------
consensus_10414#1 ------------------------------------------------------------
consensus_10414#0 TTCTTATCTCATCCTACAATTGTTGTAGCTATTATGGAATAATTTTACCAGCCTGAGAGA 878
consensus_10414#2 ------------------------------------------------------------
consensus_10414#1 ------------------------------------------------------------
consensus_10414#0 GTTTTTAAAAAAAAATGCCTGCTAATATAATGGTTAGTGTGATGAACTTAAAAAGGCGGT 938
consensus_10414#2 ------------------------------------------------------------
consensus_10414#1 ------------------------------------------------------------
consensus_10414#0 TGTATTTTGCAAGATTATATTCTTGTACTCCTTTTTTCTTTTTATAAGGCGTACTATAAA 998
consensus_10414#2 ------------------------------------------------------------
consensus_10414#1 ------------------------------------------------------------
consensus_10414#0 GT 1000
consensus_10414#2 --
consensus_10414#1 --
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||