These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_10422#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 1023 fasta sequence [GCTCCACCGTCTCCTCCGCTCGTCGCCTCGTCGGCGCGCGTTGCGATGCGCGGTGGTGCCGTACGGCTGTCCCCCGCCCCGCTAGCCGCTGCCGCCTCCCCGCTGCCGCAGGGCCGGGCCACATGGCCCCCGGTGGTGGTGTACTGTTCGCCGGTACGTCCGTCTGCTCGGAGGAGGGGCAGGATGAGGATGAGGAGGTAGCGCATCGGCGGCGGCGGCGGCGCGACGATGCGGGCACCGAAAAGCGCGCGCGAAGCCTGTACTAAGCTCTACAGAATGTGCTCTGGTTGGAAGGCTATCTTAAACCGTGGCGTGTAACAGTTGGAGTTTACATCCTGCATCTTTCTGTACTTCGAAAATGACTAAAGCTGGAGCCACTTGAGATGAGATGATAGTGGGAAGCATCTTTGAATGGAAGTATCATGCTTTTTTAATGATGTGGACTGCTCAGGAAAATCTTCTGTTCAATCTAATTCATGCTGCTTGACCTTACAAGGTACCTCAAGCCCCAGTGATGGTTGGTGCTCACCTAGGGCTAGCCTCAAGCTCCAGCTAGCTCCACCAACTTCAATTTCCAGCATCCAACAAGTACCCTACATACACTAGATTATATACATAACATGGTTGTGATCGTGATGGAGACGACGATCCTGCTGCT-GTCCTAGCTGCTACAAAATCTTTATTACTCCGATGACGGATGACGACGACGATGATTATGATGAGCCTTCTTCTCCAGCTTGCTAGAAGGCGAATTCAGAAGTAATAAGGAGAAGGGGTCCGAGACATCATCAACCTCCCCATGGGGAATACTGTTGTTTGCGTCTTTCGTTGTACTGCTCTCGTGTCTCCATGTCTACGTGTGTTTGTAGTATTGTGACCCACCCACGAGGCTTGTCGATCGTTGGCTGCCGGCTGGAGATACGCTGGCCAGCTGATGGCCGATGTACGTTAATTGTCCGTCTTCTCTGCATGTCTAATCTATCAAATATCTATCCAAAAAAAGCTGTGCTGCATTGCCAAAAA] [+] EMBL AK071496 [GCTCCACCGTCTCCTCCGCTCGTCGCCTCGTCGGCGCGCGTTGCGATGCGCGGTGGTGCCGTACGGCTGTCCCCCGCCCCGCTAGCCGCTGCCGCCTCCCCGCTGCCGCAGGGCCGGGCCACATGGCCCCCGGTGGTGGTGTACTGTTCGCCGGTACGTCCGTCTGCTCGGAGGAGGGGCAGGATGAGGATGAGGAGGTAGCGCATCGGCGGCGGCGGCGGCGCGACGATGCGGGCACCGAAAAGCGCGCGCGAAGCCTGTACTAAGCTCTACAGAATGTGCTCTGGTTGGAAGGCTATCTTAAACCGTGGCGTGTAACAGTTGGAGTTTACATCCTGCATCTTTCTGTACTTCGAAAATGACTAAAGCTGGAGCCACTTGAGATGAGATGATAGTGGGAAGCATCTTTGAATGGAAGTATCATGCTTTTTTAATGATGTGGACTGCTCAGGAAAATCTTCTGTTCAATCTAATTCATGCTGCTTGACCTTACAAGGTACCTCAAGCCCCAGTGATGGTTGGTGCTCACCTAGGGCTAGCCTCAAGCTCCAGCTAGCTCCACCAACTTCAATTTCCAGCATCCAACAAGTACCCTACATACACTAGATTATATACATAACATGGTTGTGATCGTGATGGAGACGACGATCCTGCTGCT GTCCTAGCTGCTACAAAATCTTTATTACTCCGATGACGGATGACGACGACGATGATTATGATGAGCCTTCTTCTCCAGCTTGCTAGAAGGCGAATTCAGAAGTAATAAGGAGAAGGGGTCCGAGACATCATCAACCTCCCCATGGGGAATACTGTTGTTTGCGTCTTTCGTTGTACTGCTCTCGTGTCTCCATGTCTACGTGTGTTTGTAGTATTGTGACCCACCCACGAGGCTTGTCGATCGTTGGCTGCCGGCTGGAGATACGCTGGCCAGCTGATGGCCGATGTACGTTAATTGTCCGTCTTCTCTGCATGTCTAATCTATCAA ] [+] EMBL AU031824 [ TCCACCAACTTCAATTTCCAGCATCCAACAAGTACCCTACATACACTAGATTATATACATAACATGGTTGTGATCGTGATGGAGACGACGATCCTGCTGCTGGTCCTAGCTGCTACAAAATCTTTATTACTCCGATGACGGATGACGACGACGATGATTATGATGAGCCTTCTTCTCCAGCTTGCTAGAAGGCGAATTCAGAAGTAATAAGGAGAAGGGGTCCGAGACATCATCAACCTCCCCATGGGGAATACTGTTGTTTGCGTCTTTCGTTGTACTGCTCTCGTGTCTCCATGTCTACGTGTGTTTGTAGTATTGTGACCCACCCACGAGGCTTGTCGATCGTTGGCTGCCGGCTGGAGATACGCTGGCCAGCTGATGGCCGATGTACGTTAATTGTCCGTCTTCTCTGCATGTCTAATCTATCAAATATCTATCCAAAAAAA ] [-] EMBL CF300092 [ ACATAACATGGTTGTGATCGTGATGGAGACGACGATCCTGCTGCT GTCCTAGCTGCTACAAAATCTTTATTACTCCGATGACGGATGACGACGACGATGATTATGATGAGCCTTCTTCTCCAGCTTGCTAGAAGGCGAATTCAGAAGTAATAAGGAGAAGGGGTCCGAGACATCATCAACCTCCCCATGGGGAATACTGTTGTTTGCGTCTTTCGTTGTACTGCTCTCGTGTCTCCATGTCTACGTGTGTTTGTAGTATTGTGACCCACCCACGAGGCTTGTCGATCGTTGGCTGCCGGCTGGAGATACGCTGGCCAGCTGATGGCCGATGTACGTTAATTGTCCGTCTTCTCTGCATGTCTAATCTATCAAATATCTATCCAGTTTGTGCTGTGCTGCATTGCCAAAAA] [+] EMBL AA754304 [ cgAGGAGAAGGGGTCCGAGACATCATCAACCTCCCCATGGGGAATACTGTTGTTTGCGTCTTTCGTTGTACTGCTCTCGTGTCTCCATGTCTACGTGTGTTTGTAGTATTGTGACCCACCCACGAGGCTTGTCGATCGTTGGCTGCCGGCTGGAGATACGCTGGCCAGCTGATGGCCGATGTACGTTAATTGTCCGTCTTCTCTGCATGTCTAATCTATCAAATATCTATCCAAAAAAAag ] consensusID : consensus_10422#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 692 fasta sequence [GGACCCTGGGAAAATGTGGCCTCGNCCGGTGGCCGTTGTCAAAGACNGCGGATGATTGCGAAGAGCCACTATTAAGAAGCTGGAAAATGACATCGGCCGCATTGATTCAACAGGTCCCAGCAGCAGCAACTCCAATGGCCGTAGCAGCAGTGAGGGNCAGAGGTACCTNAAGCCCCAGTGATGGTTGGTGCTCACCTAGGGCTAGCCTCAAGCTCCAGCTAGCTCCACCAACTTCAATTTCCAGCATCCAACAAGTACCCTACATACACTAGATTATATACATAACATGGTTGTGATCGTGATGGAGACGACGATCCTGCTGCTGTCCTAGCTGCTACAAAATCTTTATTACTCCGATGACGGATGACGACGACGATGATTATGATGAGCCTTCTTCTCCAGCTTGCTAGAAGGCGAATTCAGAAGTAATAAGGAGAAGGGGTCCGAGACATCATCAACCTCCCCATGGGGAATACTGTTGTTTGCGTCTTTCGTTGTACTGCTCTCGTGTCTCCATGTCTACGTGTGTTTGTAGTATTGTGACCCACCCACGAGGCTTGTCGATCGTTGGCTGCCGGCTGGAGATACGCTGGCCAGCTGATGGCCGATGTACGTTAATTGTCCGTCTTCTCTGCATGTCTAATCTATCAAATATCTATCCAGTTTGTGCTGTGCTGCAAAAAAAAAAAAAA] [+] EMBL AU031284 [GGACCCTGGGAAAATGTGGCCTCGNCCGGTGGCCGTTGTCAAAGACNGCGGATGATTGCGAAGAGCCACTATTAAGAAGCTGGAAAATGACATCGGCCGCATTGATTCAACAGGTCCCAGCAGCAGCAACTCCAATGGCCGTAGCAGCAGTGAGGGNCAGAGGTACCTNAAGCCCCAGTGATGGTTGGTGCTCACCTAGGGCTAGCCTCAAGCTCCAGCTAGCTCCACCAACTTCAATTTCCAGCATCCAACAAGTACCCTACATACACTAGATTATATACATAACATGGTTGTGATCGTGATGGAGACGACGATCCTGCTGCTGTCCTAGCTGCTACAAAATCTTTATTACTCCGATGACGGATGACGACGACGATGATTATGATGAGCCTTCTTCTCCAGCTTGCTAGAAGGCGAATTCAGAAGTAATAAGGAGAAGGGGTCCGAGACATCATCAACCTCCCCATGGGGAATACTGTTGTTTGCGTCTTTCGTTGTACTGCTCTCGTGTCTCCATGTCTACGTGTGTTTGTAGTATTGTGACCCACCCACGAGGCTTGTCGATCGTTGGCTGCCGGCTGGAGATACGCTGGCCAGCTGATGGCCGATGTACGTTAATTGTCCGTCTTCTCTGCATGTCTAATCTATCAAATATCTATCCAGTTTGTGCTGTGCTGCAAAAAAAAAAAAAA] consensusID : consensus_10422#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 407 fasta sequence [GAGAGCACCAGCACCAGTCACTGCAAATCGCCTTAGCTTTAGTTTCTTTACTGAAGAATTTCTTCAGGCACTAAGCATGGGTTCGTCGTGGACACTCGATCAGAACAAGGTCTTTGAGCTGGCGCTGGCGACATACGGCAAGGACACGCCGGACCGCTGGGAAAATGTGGCGCGGGCGGTGGGCGGTGGCAAGACAGCGGATGATGCGAAGAGGCACTATAAGAAGCTGGAAAATGACATCGGCCGCATTGATTCAACAGGTGCCAGCAGCAGCAACTCCAATGGCCGTAGCAGCAGTGA-GGGGCAGAGGTACCTCAAGCCCCAGTGA-TGGTTGGTGCTCACCTAGGGCTTAGCCTNAAGTTCCAGTTAGCTCCACCAACTTCAATTTCCAGATCCAACAAGTACCC] [+] EMBL AU164791 [GAGAGCACCAGCACCAGTCACTGCAAATCGCCTTAGCTTTAGTTTCTTTACTGAAGAATTTCTTCAGGCACTAAGCATGGGTTCGTCGTGGACACTCGATCAGAACAAGGTCTTTGAGCTGGCGCTGGCGACATACGGCAAGGACACGCCGGACCGCTGGGAAAATGTGGCGCGGGCGGTGGGCGGTGGCAAGACAGCGGATGATGCGAAGAGGCACTATAAGAAGCTGGAAAATGACATCGGCCGCATTGATTCAACAGGTGCCAGCAGCAGCAACTCCAATGGCCGTAGCAGCAGTGA GGGGCAGAGGTACCTCAAGCCCCAGTGA TGGTTGG ] [+] EMBL OSR19601A [ AGAGCACCAGCACCAGTCACTGCAAATCGNCTTAGCTTTAGTTTCTTTACTGAAGAATTTCTTCAGGCACTAAGCATGGGTTCGTCGTGGACACTCGATCAGAACAAGGTCTTTGAGCTGGCGCTGGCGACATACGGCAAGGACACGCCGGACCGCTGGGAAAATGTGGCGCGGGCGGTGGGCGGTGGCAAGACAGCGGATGATGCGAAGAGGCACTATAAGAAGCTGGAAAATGACATCGGCCGCATTGATTCAACAGGTGCCAGCAGCAGCAACTNCAATGGCCGTAGCAGCAGTTAGGGGGCAGAGGTACCTCAAGCCCCAGTTATTGGTTGGTGCTCACCTAGGGCTTAGCCTNAAGTTCCAGTTAGCTCCACCAACTTCAATTTCCAGATCCAACAAGTACCC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_10422#0 GCTCCACCGTCTCCTCCGCTCGTCGCCTCGTCGGCGCGCGTTGCGATGCGCGGTGGTGCC 60 consensus_10422#1 ------------------------------------------------------------ consensus_10422#2 ------------------------------------------------------------ consensus_10422#0 GTACGGCTGTCCCCCGCCCCGCTAGCCGCTGCCGCCTCCCCGCTGCCGCAGGGCCGGGCC 120 consensus_10422#1 ------------------------------------------------------------ consensus_10422#2 ------------------------------------------------------------ consensus_10422#0 ACATGGCCCCCGGTGGTGGTGTACTGTTCGCCGGTACGTCCGTCTGCTCGGAGGAGGGGC 180 consensus_10422#1 ------------------------------------------------------------ consensus_10422#2 ---------------------------------------------------GAGAGCACC 9 consensus_10422#0 AGGATGAGGATGAGGAGGTAGC----GCATCGGCGGCGGCGGCGGCGCGACGATGCGGGC 236 consensus_10422#1 ------------------------------------------------------------ consensus_10422#2 AGCACCAGTCACTGCAAATCGCCTTAGCTTTAGTTTCTTTACTGAAGAATTTCTTCAGGC 69 consensus_10422#0 ACCGAAAAGCGCGCGCGAAGCCTGTACTAAGCTCTACAGAATGTGCTCTGGTTGGAA--G 294 consensus_10422#1 ------------------------------------------------------------ consensus_10422#2 ACT-AAGCATGGGTTCGTCGTGGACACTC-GATCAGAACAAGGTCTTTGAGCTGGCGCTG 127 consensus_10422#0 GCTATCTTAAACCGTGGCGTGT--AACAGTTGGAGTTTACATCCTGCATCTTTCTGTACT 352 consensus_10422#1 ---------------------G--GACCCTGGGA----AAATGTGGCCTCGNCCGGTGGC 33 consensus_10422#2 GCGACATACGGCAAGGACACGCCGGACCGCTGGGA---AAATGTGGCG-CGGGCGGTGGG 183 ** ** * ** ** * * ** consensus_10422#0 TCGAAAATGACTAAAGCTGGAGCCACTTGAGATGAGATGATAGTGGGAAGCATCTTTGAA 412 consensus_10422#1 C----GTTGTCAAAGACNGCGGATGATTGCGAAGAGCCACTATTAAGAAGC-----TGGA 84 consensus_10422#2 C----GGTGGC-AAGACAGCGGATGAT-GCGAAGAGGCACTA-TAAGAAGC-----TGGA 231 ** * ** * * * * * ** *** ** * ***** ** * consensus_10422#0 TGGAAGTATCATGCTTTTTTAATGATGTGGACTGCTCAGGAAAATCTTCTGTTCAATCTA 472 consensus_10422#1 AAATGACATCGGCCGCATTGATTCAACAGGTCCCAGCAGCAGCAACTCCAAT--GGCCGT 142 consensus_10422#2 AAATGACATCGGCCGCATTGATTCAACAGGTGCCAGCAGCAGCAACTCCAAT--GGCCGT 289 *** * ** * * * ** *** * * ** * * * consensus_10422#0 ATTCATGCTGCTTGACCTTACAAGGTACCTCAAGCCCCAGTGATGGTTGGTGCTCACCTA 532 consensus_10422#1 AGCAGCAGTGAGGGNCA----GAGGTACCTNAAGCCCCAGTGATGGTTGGTGCTCACCTA 198 consensus_10422#2 AGCAGCAGTGAGGGGCA----GAGGTACCTCAAGCCCCAGTGATGGTTGGTGCTCACCTA 345 * ** * * ******** ***************************** consensus_10422#0 GGGCT-AGCCTCAAGCTCCAGCTAGCTCCACCAACTTCAATTTCCAGCATCCAACAAGTA 591 consensus_10422#1 GGGCT-AGCCTCAAGCTCCAGCTAGCTCCACCAACTTCAATTTCCAGCATCCAACAAGTA 257 consensus_10422#2 GGGCTTAGCCTNAAGTTCCAGTTAGCTCCACCAACTTCAATTTCCAG-ATCCAACAAGTA 404 ***** ***** *** ***** ************************* ************ consensus_10422#0 CCCTACATACACTAGATTATATACATAACATGGTTGTGATCGTGATGGAGACGACGATCC 651 consensus_10422#1 CCCTACATACACTAGATTATATACATAACATGGTTGTGATCGTGATGGAGACGACGATCC 317 consensus_10422#2 CCC--------------------------------------------------------- 407 *** consensus_10422#0 TGCTGCTGTCCTAGCTGCTACAAAATCTTTATTACTCCGATGACGGATGACGACGACGAT 711 consensus_10422#1 TGCTGCTGTCCTAGCTGCTACAAAATCTTTATTACTCCGATGACGGATGACGACGACGAT 377 consensus_10422#2 ------------------------------------------------------------ consensus_10422#0 GATTATGATGAGCCTTCTTCTCCAGCTTGCTAGAAGGCGAATTCAGAAGTAATAAGGAGA 771 consensus_10422#1 GATTATGATGAGCCTTCTTCTCCAGCTTGCTAGAAGGCGAATTCAGAAGTAATAAGGAGA 437 consensus_10422#2 ------------------------------------------------------------ consensus_10422#0 AGGGGTCCGAGACATCATCAACCTCCCCATGGGGAATACTGTTGTTTGCGTCTTTCGTTG 831 consensus_10422#1 AGGGGTCCGAGACATCATCAACCTCCCCATGGGGAATACTGTTGTTTGCGTCTTTCGTTG 497 consensus_10422#2 ------------------------------------------------------------ consensus_10422#0 TACTGCTCTCGTGTCTCCATGTCTACGTGTGTTTGTAGTATTGTGACCCACCCACGAGGC 891 consensus_10422#1 TACTGCTCTCGTGTCTCCATGTCTACGTGTGTTTGTAGTATTGTGACCCACCCACGAGGC 557 consensus_10422#2 ------------------------------------------------------------ consensus_10422#0 TTGTCGATCGTTGGCTGCCGGCTGGAGATACGCTGGCCAGCTGATGGCCGATGTACGTTA 951 consensus_10422#1 TTGTCGATCGTTGGCTGCCGGCTGGAGATACGCTGGCCAGCTGATGGCCGATGTACGTTA 617 consensus_10422#2 ------------------------------------------------------------ consensus_10422#0 ATTGTCCGTCTTCTCTGCATGTCTAATCTATCAAATATCTATCCAAAAAAAGCTGTGCTG 1011 consensus_10422#1 ATTGTCCGTCTTCTCTGCATGTCTAATCTATCAAATATCTATCCAGTTTGTGCTGTGCTG 677 consensus_10422#2 ------------------------------------------------------------ consensus_10422#0 CATTGCCAAAAA--- 1023 consensus_10422#1 CAAAAAAAAAAAAAA 692 consensus_10422#2 --------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||