These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_10423#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 6 consensus length = 1281 fasta sequence [CGCTCCTCCCCTCCCACTCCGTCGTGGCCGGCAGCGGGAGCAGCCGCTGCCTCCTCCGCCGCCGCCGCCGCCGCCGCGCGCGCCTCCGCGAATCCTCTTCCTCCTCCTCTCTCCTCGCCGCCGCCCAGGCCCAGCCGCAGGAGCATGGCCAGCGCCGGCGTCGGACGCGGCCGGGTCCGCGTCGCGGTCGTCGGCGACGTGCATAATGATTGGACCCTTGAGGAAGACTCAAAAGCCCTACATTTTCTCCAGCCAGATTTGGTACTTTTTACAGGTGATTATGGCAACGAGAATGTTCAACTTGTTAAAAGCATTTCAGATCTTCAGCTCCCCAAAGCAGCTATTCTTGGGAATCATGACTGTTGGCACACGTATCAGTTTTCAGAGAAGAAGGTAGATCGTGTCCAGCTTCAGCTAGAGAGCCTTGGTGAGCAGCATGTTGGGTACAAATGTTTGGATTTTCCAACAATAAAGCTGAGTGTTGTTGGTGGACGACCATTTTCCTGCGGGGGTAATAGGATATTTAGACCAAAGCTTCTGTCAAAATGGTTGGTATGGTGTCAATGATATGGCTGAAAGTGCAAAGAGGATATATGATGCTGCTACAAATGCACCAAAGGAGCATGCTGTCATATTACTGGCACACAATGGGCCAACAGGTCTAGGCTCAAGAATGGAGGATATTTGTGGGCGGGATTGGGTTGCTGGTGGTGGTGATCATGGTGATCCAGATCTGGAGCAAGCCATATCTGATCTGCAAAGAGAAACCGGAGTTTCGATACCGCTGGTCGTGTTCGGTCACATGCACAAGAGCCTCGCCTACGGGAGAGGCCTTCGGAAGATGATTGCCTTTGGAGCTAACCGGACTATATATCTGAACGGCGCCGTTGTGCCTAGAGTGAATCATGCGCAATCAAGCAGGCAGCCTGCAATCTCCACAAGCGAAAAGACTGGGCTCGAAGGATTAACAGGACTGATGGTTCCGACATCGCGGGCGTTCACCATTGTTGATCTCTTTGAAGGCGCCGTTGAGAAAATCTCCGAGGTCTGGGTGACGGTGGGTGATGCCAGGACGGAGCTTGAGCAGGAATTAGTCTTGTACAAGCAACCACGTGAGCACATATGACTTCCACAAACTGGTACCGAAACTAAGTACTCCGTACATGAATGTAAATGTGATACTAGTATGATCCGAATTTCGCAATACAGAGAAGTACAAAACGCACTGTCAAAATGTCCGTGGAGTGAAGTAATGCAATGTAAATTCGCTGAAAAAAAGGA] [+] EMBL CB654848 [CGCTCCTCCCCTCCCACTCCGTCGTGGCCGGCAGCGGGAGCAGCCGCTGCCTCCTCCGCCGCCGCCGCCGCCGCCGCGCGCGCCTCCGCGAATCCTCTTCCTCCTCCTCTCTCCTCGCCGCCGCCCAGGCCCAGCCGCAGGAGCATGGCCAGCGCCGGCGTCGGACGCGGCCGGGTCCGCGTCGCGGTCGTCGGCGACGTGCATAATGATTGGACCCTTGAGGAAGACTCAAAAGCCCTACATTTTCTCCAGCCAGATTTGGTACTTTTTACAGGTGATTATGGCAACGAGAATGTTCAACTTGTTAAAAGCATTTCAGATCTTCAGCTCCCCAAAGCAGCTATTCTTGGGAATCATGACTGTTGGCACACGTATCAGTTTTCAGAGAAGAAGGTAGATCGTGTCCAGCTTCAGCTAGAGAGCCTTGGTGAGCAGCATGTTGGGTACAAATGTTTGGATTTTCCAACAATAAAGCTGAGTGTTGTTGGTGGACGACCATTTTCCTGCGGGGGTAATAGGATATTTAGACCAAAGCTTCTGTCAAAATGGTTGGTATGGTGTCAATGATATGGCTGAAAGTGCAAAGAGGATATATGATGCTGCTACAAATGCACCAAAGGAGCATGCTGTCATATTACTGGCACACAATGGGCCAACAGGTCTAGGCTCAAGAATGGAGGATATTTGTGGGCGGGATTGGGTTGCTGGTGGTGGTGATCATGGTGATCCAGATCTGGAGCAAGCCATATCTGATCTGCAAAGAG AACCGGAGTTT ] [+] EMBL CB637445 [ TCCCCTCCCACTCCGTCGTGGCCGGCAGCGGGAGCAGCCGCTGCCTCCTCCGCCGCCGCCGCCGCCGCCGCGCGCGCCTCCGCGAATCCTCTTCCTCCTCCTCTCTCCTCGCCGCCGCCCAGGCCCAGCCGCAGGAGCATGGCCAGCGCCGGCGTCGGACGCGGCCGGGTCCGCGTCGCGGTCGTCGGCGACGTGCATAATGATTGGACCCTTGAGGAAGACTCAAAAGCCCTACATTTTCTCCAGCCAGATTTGGTACTTTTTACAGGTGATTATGGCAACGAGAATGTTCAACTTGTTAAAAGCATTTCAGATCTTCAGCTCCCCAAAGCAGCTATTCTTGGGAATCATGACTGTTGGCACACGTATCAGTTTTCAGAGAAGAAGGTAGATCGTGTCCAGCTTCAGCTAGAGAGCCTTGGTGAGCAGCATGTTGGGTACAAATGTTTGGATTTTCCAACAATAAAGC ] [+] EMBL CB637444 [ TCCCCTCCCACTCCGTCGTGGCCGGCAGCGGGAGCAGCCGCTGCCTCCTCCGCCGCCGCCGCCGCCGCCGCGCGCGCCTCCGCGAATCCTCTTCCTCCTCCTCTCTCCTCGCCGCCGCCCAGGCCCAGCCGCAGGAGCATGGCCAGCGCCGGCGTCGGACGCGGCCGGGTCCGCTTTTCGGTCGTCGGCGACGTGCATAATGATTGGACCCTTGAGGAAGACTCAAAAGCCCTACATTTTCTCCAGCCAGATTTGGTACTTTTTACAGGTGATTATGGCAACGAGAATGTTCAACTTGTTAAAAGCATTTCAGATCTTCAGCTCCCCAAAGCAGCTATTCTTGGGAATCATGACTGTTGGCACACGTATCAGTTTTCAGAGAAGAAGGTAGATCGTGTCCAGCTTCAGCTAGAGAGCCTTGGTGAGCAGCATGTTGGGTACAAATGTTTGGATTCTCCAACAATA ] [+] EMBL AK068745 [ CCTCCCACTCCGTCGTGGCCGGCAGCGGGAGCAGCCGCTGCCTCCTCCGCCGCCGCCGCCGCCGCCGCGCGCGCCTCCGCGAATCCTCTTCCTCCTCCTCTCTCCTCGCCGCCGCCCAGGCCCAGCCGCAGGAGCATGGCCAGCGCCGGCGTCGGACGCGGCCGGGTCCGCGTCGCGGTCGTCGGCGACGTGCATAATGATTGGACCCTTGAGGAAGACTCAAAAGCCCTACATTTTCTCCAGCCAGATTTGGTACTTTTTACAGGTGATTATGGCAACGAGAATGTTCAACTTGTTAAAAGCATTTCAGATCTTCAGCTCCCCAAAGCAGCTATTCTTGGGAATCATGACTGTTGGCACACGTATCAGTTTTCAGAGAAGAAGGTAGATCGTGTCCAGCTTCAGCTAGAGAGCCTTGGTGAGCAGCATGTTGGGTACAAATGTTTGGATTTTCCAACAATAAAGCTGAGTGTTGTTGGTGGACGACCATTTTCCTGCGGGGGTAATAGGATATTTAGACCAAAGCTTCTGTCAAAA TGGTATGGTGTCAATGATATGGCTGAAAGTGCAAAGAGGATATATGATGCTGCTACAAATGCACCAAAGGAGCATGCTGTCATATTACTGGCACACAATGGGCCAACAGGTCTAGGCTCAAGAATGGAGGATATTTGTGGGCGGGATTGGGTTGCTGGTGGTGGTGATCATGGTGATCCAGATCTGGAGCAAGCCATATCTGATCTGCAAAGAGAAACCGGAGTTTCGATACCGCTGGTCGTGTTCGGTCACATGCACAAGAGCCTCGCCTACGGGAGAGGCCTTCGGAAGATGATTGCCTTTGGAGCTAACCGGACTATATATCTGAACGGCGCCGTTGTGCCTAGAGTGAATCATGCGCAATCAAGCAGGCAGCCTGCAATCTCCACAAGCGAAAAGACTGGGCTCGAAGGATTAACAGGACTGATGGTTCCGACATCGCGGGCGTTCACCATTGTTGATCTCTTTGAAGGCGCCGTTGAGAAAATCTCCGAGGTCTGGGTGACGGTGGGTGATGCCAGGACGGAGCTTGAGCAGGAATTAGTCTTGTACAAGCAACCACGTGAGCACATATGACTTCCACAAACTGGTACCGAAACTAAGTACTCCGTACATGAATGTAAATGTGATACTAGTATGATCCGAATTTCGCAATACAGAGAAGTACAAAACGCACTGTCAAAATGTCCGTGGAGTGAAGTAATGCAATGT ] [-] EMBL CA305653 [ TTCCAACAATAAAGCTGAGTGTTGTTGGTGGACGACCATTTTCCTGCGGGGGTAATAGGATATTTAGACCAAAGCTTCTGTCAAAA TGGTATGGTGTCAATGATATGGCTGAAAGTGCAAAGAGGATATATGATGCTGCTACAAATGCACCAAAGGAGCATGCTGTCATATTACTGGCACACAATGGGCCAACAGGTCTAGGCTCAAGAATGGAGGATATTTGTGGGCGGGATTGGGTTGCTGGTGGTGGTGATCATGGTGATCCAGATCTGGAGCAAGCCATATCTGATCTGCAAAGAGAAACCGGAGTTTCGATACCGCTGGTCGTGTTCGGTCACATGCACAAGAGCCTCGCCTACGGGAGAGGCCTTCGGAAGATGATTGCCTTTGGAGCTAACCGGACTATATATCTGAACGGCGCCGTTGTGCCTAGAGTGAATCATGCGCAATCAAGCAGGCAGCCTGCAATCTCCACAAGCGAAAAGACTGGGCTCGAAGGATTAACAGGACTGATGGTTCCGACATCGCGGGCGTTCACCATTGTTGATCTCTTTGAAGGCGCCGTTGAGAAAATCTCCGAGGTCTGGGTGACGGTGGGTGGTGCCAGGACGGAGCTTGAGCAG ] [-] EMBL CB654849 [ GGTGGACGACCATTTTCCTGCGGGGGTAATAGGATATTTAGACCAAAGCTTCTGTCAAAATGGTTGGTATGGTGTCAATGATATGGCTGAAAGTGCAAAGAGGATATATGATGCTGCTACAAATGCACCAAAGGAGCATGCTGTCATATTACTGGCACACAATGGGCCAACAGGTCTAGGCTCAAGAATGGAGGATATTTGTGGGCGGGATTGGGTTGCTGGTGGTGGTGATCATGGTGATCCAGATCTGGAGCAAGCCATATCTGATCTGCAAAGAGAAACCGGAGTTTCGATACCGCTGGTCGTGTTCGGTCACATGCACAAGAGCCTCGCCTACGGGAGAGGCCTTCGGAAGATGATTGCCTTTGGAGCTAACCGGACTATATATCTGAACGGCGCCGTTGTGCCTAGAGTGAATCATGCGCAATCAAGCAGGCAGCCTGCAATCTCCACAAGCGAAAAGACTGGGCTCGAAGGATTAACAGGACTGATGGTTCCGACATCGCGGGCGTTCACCATTGTTGATCTCTTTGAAGGCGCCGTTGAGAAAATCTCCGAGGTCTGGGTGACGGTGGGTGATGCCAGGACGGAGCTTGAGCAGGAATTAGTCTTGTACAAGCAACCACGTGAGCACATATGACTTCCACAAACTGGTACCGAAACTAAGTACTCCGTACATGAATGTAAATGTGATACTAGTATGATCCGAATTTCGCAATACAGAGAAGTACAAAACGCACTGTCAAAATGTGGGTGGAGTGAAGTAATGCAATGTAAATTCGCTGAAAAAAAGGA] consensusID : consensus_10423#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 456 fasta sequence [AGGGAAAAAGAAAAGAAAAAAAAGAAGGGGGGAAGAAAGAAATGGTGAGGCCCGCACTGCTACGGTCTCGCTCCTCCCCTCCCACTCCGTCGTGGCCGGCAGCGGGAGCAGCCGCTGCCTCCTCCGCCGCCGCCGCCGCCGCCGCGCGCGCCTCCGCGAATCCTCTTCCTCCTCCTCTCTCCTCGCCGCCGCCCAGGCCCAGCCGCAGGAGCATGGCCAGCGCCGGCGTCGGACGCGGCCGGGTCCGCGTCGCGGTCGTCGGCGACGTGGTAACCCCCTCCTTGCCCTCTTCCTCCGTCTCTTCTTTGCGGCGTGCCTGGGATGGGGGATAGGCCAGACATGGGTGCTGGTGTGGCCTTGCGATTCTCGGTGGGTTTCGTGTGGCGTAGCATAGGGGATTCGGAGTGAGAGGGAGATGGCTTTGGGGACGGAAGCATTCTACCAATTCCCGCCCCC] [+] EMBL AK109209 [AGGGAAAAAGAAAAGAAAAAAAAGAAGGGGGGAAGAAAGAAATGGTGAGGCCCGCACTGCTACGGTCTCGCTCCTCCCCTCCCACTCCGTCGTGGCCGGCAGCGGGAGCAGCCGCTGCCTCCTCCGCCGCCGCCGCCGCCGCCGCGCGCGCCTCCGCGAATCCTCTTCCTCCTCCTCTCTCCTCGCCGCCGCCCAGGCCCAGCCGCAGGAGCATGGCCAGCGCCGGCGTCGGACGCGGCCGGGTCCGCGTCGCGGTCGTCGGCGACGTGGTAACCCCCTCCTTGCCCTCTTCCTCCGTCTCTTCTTTGCGGCGTGCCTGGGATGGGGGATAGGCCAGACATGGGTGCTGGTGTGGCCTTGCGATTCTCGGTGGGTTTCGTGTGGCGTAGCATAGGGGATTCGGAGTGAGAGGGAGATGGCTTTGGGGACGGAAGCATTCTACCAATTCCCGCCCCC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_10423#0 ------------------------------------------------------------ consensus_10423#1 AGGGAAAAAGAAAAGAAAAAAAAGAAGGGGGGAAGAAAGAAATGGTGAGGCCCGCACTGC 60 consensus_10423#0 --------CGCTCCTCCCCTCCCACTCCGTCGTGGCCGGCAGCGGGAGCAGCCGCTGCCT 52 consensus_10423#1 TACGGTCTCGCTCCTCCCCTCCCACTCCGTCGTGGCCGGCAGCGGGAGCAGCCGCTGCCT 120 **************************************************** consensus_10423#0 CCTCCGCCGCCGCCGCCGCCGCCGCGCGCGCCTCCGCGAATCCTCTTCCTCCTCCTCTCT 112 consensus_10423#1 CCTCCGCCGCCGCCGCCGCCGCCGCGCGCGCCTCCGCGAATCCTCTTCCTCCTCCTCTCT 180 ************************************************************ consensus_10423#0 CCTCGCCGCCGCCCAGGCCCAGCCGCAGGAGCATGGCCAGCGCCGGCGTCGGACGCGGCC 172 consensus_10423#1 CCTCGCCGCCGCCCAGGCCCAGCCGCAGGAGCATGGCCAGCGCCGGCGTCGGACGCGGCC 240 ************************************************************ consensus_10423#0 GGGTCCGCGTCGCGGTCGTCGGCGACGTGCATAATGATTGGACCCTTGAGGAAGACTCAA 232 consensus_10423#1 GGGTCCGCGTCGCGGTCGTCGGCGACGTG----GTAACCCCCTCCTTGCC-----CTCTT 291 ***************************** * * ***** *** consensus_10423#0 AAGCCCTACATTTTCTCCAGCCAGATTTGGTACTTTTTACAGGTGATTATGGCAACGAGA 292 consensus_10423#1 CCTCCGTCTCTTCTTTGCGGC--------GTGCCTGGGATGGGGGATAGGCCAGACATGG 343 ** * ** * * * ** ** * * * ** *** ** * consensus_10423#0 ATGTTCAACTTGTTAAAAGCATTTCAGATCTTCAGCTCCCCAAAGCAGCTATTCTTGGGA 352 consensus_10423#1 GTGCTGGTGTGGCCTTGCGATTCTCGG----TGGGTTTCGTGTGGCG--TAGCATAGGGG 397 ** * * * * * ** * * * * * ** ** * *** consensus_10423#0 ATCATGACTGTTGGCACACGTATCAGTTTTCAGAGAAGAAGGTAGATCGTGTCCAGCTTC 412 consensus_10423#1 ATTCGGAGTG-----AGAGGGAGATGGCTTTGGGGACGGAAGCATTCTA---CCAATTCC 449 ** ** ** * * * * * ** * ** * * * * *** * * consensus_10423#0 AGCTAGAGAGCCTTGGTGAGCAGCATGTTGGGTACAAATGTTTGGATTTTCCAACAATAA 472 consensus_10423#1 CGCCCCC----------------------------------------------------- 456 ** consensus_10423#0 AGCTGAGTGTTGTTGGTGGACGACCATTTTCCTGCGGGGGTAATAGGATATTTAGACCAA 532 consensus_10423#1 ------------------------------------------------------------ consensus_10423#0 AGCTTCTGTCAAAATGGTTGGTATGGTGTCAATGATATGGCTGAAAGTGCAAAGAGGATA 592 consensus_10423#1 ------------------------------------------------------------ consensus_10423#0 TATGATGCTGCTACAAATGCACCAAAGGAGCATGCTGTCATATTACTGGCACACAATGGG 652 consensus_10423#1 ------------------------------------------------------------ consensus_10423#0 CCAACAGGTCTAGGCTCAAGAATGGAGGATATTTGTGGGCGGGATTGGGTTGCTGGTGGT 712 consensus_10423#1 ------------------------------------------------------------ consensus_10423#0 GGTGATCATGGTGATCCAGATCTGGAGCAAGCCATATCTGATCTGCAAAGAGAAACCGGA 772 consensus_10423#1 ------------------------------------------------------------ consensus_10423#0 GTTTCGATACCGCTGGTCGTGTTCGGTCACATGCACAAGAGCCTCGCCTACGGGAGAGGC 832 consensus_10423#1 ------------------------------------------------------------ consensus_10423#0 CTTCGGAAGATGATTGCCTTTGGAGCTAACCGGACTATATATCTGAACGGCGCCGTTGTG 892 consensus_10423#1 ------------------------------------------------------------ consensus_10423#0 CCTAGAGTGAATCATGCGCAATCAAGCAGGCAGCCTGCAATCTCCACAAGCGAAAAGACT 952 consensus_10423#1 ------------------------------------------------------------ consensus_10423#0 GGGCTCGAAGGATTAACAGGACTGATGGTTCCGACATCGCGGGCGTTCACCATTGTTGAT 1012 consensus_10423#1 ------------------------------------------------------------ consensus_10423#0 CTCTTTGAAGGCGCCGTTGAGAAAATCTCCGAGGTCTGGGTGACGGTGGGTGATGCCAGG 1072 consensus_10423#1 ------------------------------------------------------------ consensus_10423#0 ACGGAGCTTGAGCAGGAATTAGTCTTGTACAAGCAACCACGTGAGCACATATGACTTCCA 1132 consensus_10423#1 ------------------------------------------------------------ consensus_10423#0 CAAACTGGTACCGAAACTAAGTACTCCGTACATGAATGTAAATGTGATACTAGTATGATC 1192 consensus_10423#1 ------------------------------------------------------------ consensus_10423#0 CGAATTTCGCAATACAGAGAAGTACAAAACGCACTGTCAAAATGTCCGTGGAGTGAAGTA 1252 consensus_10423#1 ------------------------------------------------------------ consensus_10423#0 ATGCAATGTAAATTCGCTGAAAAAAAGGA 1281 consensus_10423#1 ----------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||