These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_1043#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 2583 fasta sequence [CACGCGACCTGCCATGTCTGTGCTTCTGCTTCTCTTCTTGCCGCTCGCCGCCGCCCAACCATGGCAAGTATGCCAAGACAGCCGGGGCAAATACACATCAAACAGCACCTACCAAGCCAACATCCAATCGCTGTCGTCCACGCTCCCCGCGAAAGCCGCCGCGCCCAGCACCGGCCTCTTCGCCACCCGCGTCGCCGGAAATGCCCCAGACACCGTGTACGCCCTTGCCTTCTGCCGCGGGGACATCACCAACGCCTCCGCCTGCGCAGGCTGCGTGGCATCCGGTTTCCAGGACGCGCAGCAGCTGTGCCCGTTCAACAAGGCTGCCTCCCTGTACTACGATCTCTGCCTCCTCCGCTTCGCCGATGAAAACTTCCTCGCCACCAACAACAGCGATGTAGTCATGCTGATGAACTCACAGAACTTCACGGCGAGCGTCGGCTCGGTCCGCCTCCTCCTCTTCACGCTGCTGAACGCCACAGCCGAGTCGGCAGCGAGCAGCTCGAGGAGGTTCACCACCTCGCGGTTGGACGTCAGCTCCCTCCCCACGCTGTACTGCCTTATGCAGTGCACGCCTGACCTGACGGCCGGAGAGTGCGCGGCCTGCTTCGAGGATTTCCCGCGGTTGACGCTCCAGTACCTCGACGGTGCGCGAGGCGGAAGGATTCTCGCGACACGCTGCACCATGAGGTACGAGATCTACCCGTTCTACTCAGGTGACACGATGCTGCGTATCATCAACTTGGCAACCACGGTGCCCGAGATGAACACCACGGCACCAACTACTCCGGTCACCGTGTATCCGCAGCCAGCGGGGCCAGGTGGTGCGAGCGCGCCACCACCGCCGCAGCCAAACCCCGGCATCCCGGAACAGGCACAGCGCTCGCCCTATCACAAGAGTAAGGTGTGGATCGTTGCTATTGTTGCTCCACTACTGGCAATTCTGTTTTGTTTCATGCTTTCCATTGTATGGATCAGAAGAGGTAGAAAAGGAGAGGTAAACATGCAGAACAATATTGCTGCAGTAAATAGGCTGGAAGAAGACGCACTTGTTTGGAGATTGGAAGAGAGGAGTTCAGAGTTCTCTCTTTTTGAATTTTCTGAGTTGCTGGAGGCTACAGACAACTTCGCAGCAGAGAACAGGCTTGGACAAGGAGGCTTTGGCCCTGTATACAAGGGTCAATTGCATGATGGGGTGGAAGTTGCAGTTAAAAGGCTTGCTTCACAATCAGGACAGGGTTTCACTGAGTTCAAAAATGAAGTTGAACTTATAGCTAAACTACAACACACAAATCTTGTTAGGCTGCTGGGATGCTGCATTCAGGGAGAGGAGAAAATATTGGTGTATGAATATTTGCCAAACAAAAGCTTAGATTTCTTTATCTTTGATGTCGACAAAACCAGTTTAATTGACTGGAATAAACGTTGCGGAATAATTGAAGGGATAGCTCAAGGTCTTCTTTACTTGCACAAGCACTCTCGGCTCCGTGTCATACACAGAGACCTTAAAGCCAGCAACATTCTTTTGGACCAGGACATGAATCCTAAAATATCTGATTTTGGGCTAGCAAAAATTTTTAGCTCTAATAATACCGAAGGAAACACAAAGAGGGTGGTGGGAACATATGGTTACATGTCACCAGAGTATGCCTCTGAAGGTATCTACTCGATCAAATCTGATGTGTTTAGCTTTGGTGTTCTTCTTCTTGAGATACTTAGCGGAAAAAGGAATTCTGGTTTCCACCAATACGGAGATTTTCTTAACCTCCTAGGCTATGCATGGCATATGTGGGAAGAAGGGAGATGGCTTGATATAATAGGAGCGTCAATTCCTCAGACGATCCCTACAGAAGGGTTGAGGAAGTACATCAACATTGCGCTTATGTGCGTGCAAGAGAACGCAGATGATCGACCGACCATGTCAGATGTCGTAGCGATGCTAAGTAGCGAGAGTGCGGTTCTTCCTGAACCTAAGCACCCGGCATACTACAACCTAAGGGTATCAAAAGTACAGGGATCTACTAATGTTGTTCAATCAATCAGTGTGAATGATGTAACTATCACTTCCAACCCAGAGGGTAGATAGCTGGTACCTTTGGGTCTCATTTCCAGCTCTCCATATCTCTCGTATAACAGCATCAAGGCATCAATTGTAATAATGAAGGTATGTGGATGCAGTTGTCGTGGCAGCCGATCTCATCCAGTCTTATTTGCAGACAGTGGCGGATCCAGAAAATCGATTCGTTGGTGTTATAACATGTCTATCGGTGTCATAATATGGTAATTATGCTTAGATCATGGTGTTATGACATATGGATAAGCAGTTTTGCTATATGTTTGCCGAAAGTCGTCGGTGTCGCCTGACACCGGTCCTAGTAATGTAGATCCGCCCCTGTTTGCAGAGTTGTTTTCATAGTCAAGTTTCCCTTCCCCTTTATAAGGATAGTTGCTTTTAAGATATTTTGTTTTGAGGCGATGTATCAGGGATTTACTTAATAACTAGAAAGGTAGCCCGCGCACATGCGCGGGCAGCTTCTTATGTAATGTGAGTGAAATTTTATTATGAATATTTATGTGCAGGGT] [+] EMBL AK064115 [CACGCGACCTGCCATGTCTGTGCTTCTGCTTCTCTTCTTGCCGCTCGCCGCCGCCCAACCATGGCAAGTATGCCAAGACAGCCGGGGCAAATACACATCAAACAGCACCTACCAAGCCAACATCCAATCGCTGTCGTCCACGCTCCCCGCGAAAGCCGCCGCGCCCAGCACCGGCCTCTTCGCCACCCGCGTCGCCGGAAATGCCCCAGACACCGTGTACGCCCTTGCCTTCTGCCGCGGGGACATCACCAACGCCTCCGCCTGCGCAGGCTGCGTGGCATCCGGTTTCCAGGACGCGCAGCAGCTGTGCCCGTTCAACAAGGCTGCCTCCCTGTACTACGATCTCTGCCTCCTCCGCTTCGCCGATGAAAACTTCCTCGCCACCAACAACAGCGATGTAGTCATGCTGATGAACTCACAGAACTTCACGGCGAGCGTCGGCTCGGTCCGCCTCCTCCTCTTCACGCTGCTGAACGCCACAGCCGAGTCGGCAGCGAGCAGCTCGAGGAGGTTCACCACCTCGCGGTTGGACGTCAGCTCCCTCCCCACGCTGTACTGCCTTATGCAGTGCACGCCTGACCTGACGGCCGGAGAGTGCGCGGCCTGCTTCGAGGATTTCCCGCGGTTGACGCTCCAGTACCTCGACGGTGCGCGAGGCGGAAGGATTCTCGCGACACGCTGCACCATGAGGTACGAGATCTACCCGTTCTACTCAGGTGACACGATGCTGCGTATCATCAACTTGGCAACCACGGTGCCCGAGATGAACACCACGGCACCAACTACTCCGGTCACCGTGTATCCGCAGCCAGCGGGGCCAGGTGGTGCGAGCGCGCCACCACCGCCGCAGCCAAACCCCGGCATCCCGGAACAGGCACAGCGCTCGCCCTATCACAAGAGTAAGGTGTGGATCGTTGCTATTGTTGCTCCACTACTGGCAATTCTGTTTTGTTTCATGCTTTCCATTGTATGGATCAGAAGAGGTAGAAAAGGAGAGGTAAACATGCAGAACAATATTGCTGCAGTAAATAGGCTGGAAGAAGACGCACTTGTTTGGAGATTGGAAGAGAGGAGTTCAGAGTTCTCTCTTTTTGAATTTTCTGAGTTGCTGGAGGCTACAGACAACTTCGCAGCAGAGAACAGGCTTGGACAAGGAGGCTTTGGCCCTGTATACAAGGGTCAATTGCATGATGGGGTGGAAGTTGCAGTTAAAAGGCTTGCTTCACAATCAGGACAGGGTTTCACTGAGTTCAAAAATGAAGTTGAACTTATAGCTAAACTACAACACACAAATCTTGTTAGGCTGCTGGGATGCTGCATTCAGGGAGAGGAGAAAATATTGGTGTATGAATATTTGCCAAACAAAAGCTTAGATTTCTTTATCTTTGATGTCGACAAAACCAGTTTAATTGACTGGAATAAACGTTGCGGAATAATTGAAGGGATAGCTCAAGGTCTTCTTTACTTGCACAAGCACTCTCGGCTCCGTGTCATACACAGAGACCTTAAAGCCAGCAACATTCTTTTGGACCAGGACATGAATCCTAAAATATCTGATTTTGGGCTAGCAAAAATTTTTAGCTCTAATAATACCGAAGGAAACACAAAGAGGGTGGTGGGAACATATGGTTACATGTCACCAGAGTATGCCTCTGAAGGTATCTACTCGATCAAATCTGATGTGTTTAGCTTTGGTGTTCTTCTTCTTGAGATACTTAGCGGAAAAAGGAATTCTGGTTTCCACCAATACGGAGATTTTCTTAACCTCCTAGGCTATGCATGGCATATGTGGGAAGAAGGGAGATGGCTTGATATAATAGGAGCGTCAATTCCTCAGACGATCCCTACAGAAGGGTTGAGGAAGTACATCAACATTGCGCTTATGTGCGTGCAAGAGAACGCAGATGATCGACCGACCATGTCAGATGTCGTAGCGATGCTAAGTAGCGAGAGTGCGGTTCTTCCTGAACCTAAGCACCCGGCATACTACAACCTAAGGGTATCAAAAGTACAGGGATCTACTAATGTTGTTCAATCAATCAGTGTGAATGATGTAACTATCACTTCCAACCCAGAGGGTAGATAGCTGGTACCTTTGGGTCTCATTTCCAGCTCTCCATATCTCTCGTATAACAGCATCAAGGCATCAATTGTAATAATGAAGGTATGTGGATGCAGTTGTCGTGGCAGCCGATCTCATCCAGTCTTATTTGCAGACAGTGGCGGATCCAGAAAATCGATTCGTTGGTGTTATAACATGTCTATCGGTGTCATAATATGGTAATTATGCTTAGATCATGGTGTTATGACATATGGATAAGCAGTTTTGCTATATGTTTGCCGAAAGTCGTCGGTGTCGCCTGACACCGGTCCTAGTAATGTAGATCCGCCCCTGTTTGCAGAGTTGTTTTCATAGTCAAGTTTCCCTTCCCCTTTATAAGGATAGTTGCTTTTAAGATATTTTGTTTTGAGGCGATGTATCAGGGATTTACTTAATAACTAGAAAGGTAGCCCGCGCACATGCGCGGGCAGCTTCTTATGTAATGTGAGTGAAATTTTATTATGAATATTTATGTGCAGGGT] consensusID : consensus_1043#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 576 fasta sequence [GAGTCGGCAGCGAGCAGCTCGAGGAGGTTCACCACCTCGCGGTTGGACGTCAGCTCCCTCCCCACGCTGTACTGCCTTATGCAGTGCACGCCTGACCTGACGGCCGGAGAGTGCGCGGCCTGCTTCGAGGATTTCCCGCGGTTGACGCTCCAGTACCTCGACGGTGCGCGAGGCGGAAGGATTCTCGCGACACGCTGCACCATGAGGTACGAGATCTACCCGTTCTACTCAGGTGACACGATGCTGCGTATCATCAACTTGGCAACCACGGTGCCCGAGATGAACACCACGGCACCAACTACTCCGGTCACCGTGTATCCGCACNCAGCGGGCCCAGNGTGGGTGGCGAGCGCGCCACCNACCGCCGCAGTCAAACCCCGGCATCCCGGAACAGGCACAGCGCTCGCCCTGTCAGTCTTGCATGAATAGTGAATACTCTCTCCTTGCAACACGATTACAATTTTGGAATACGGCTCATGTCTTATTGTCATTAATTAGATCACAAGAGTAAGGTGGTGGATCGTTGCTATTGTTGCTCCACTACTGGCAATTCTGGTTTTGTTTCATGCTTTCCAT] [+] EMBL CF322762 [GAGTCGGCAGCGAGCAGCTCGAGGAGGTTCACCACCTCGCGGTTGGACGTCAGCTCCCTCCCCACGCTGTACTGCCTTATGCAGTGCACGCCTGACCTGACGGCCGGAGAGTGCGCGGCCTGCTTCGAGGATTTCCCGCGGTTGACGCTCCAGTACCTCGACGGTGCGCGAGGCGGAAGGATTCTCGCGACACGCTGCACCATGAGGTACGAGATCTACCCGTTCTACTCAGGTGACACGATGCTGCGTATCATCAACTTGGCAACCACGGTGCCCGAGATGAACACCACGGCACCAACTACTCCGGTCACCGTGTATCCGCACNCAGCGGGCCCAGNGTGGGTGGCGAGCGCGCCACCNACCGCCGCAGTCAAACCCCGGCATCCCGGAACAGGCACAGCGCTCGCCCTGTCAGTCTTGCATGAATAGTGAATACTCTCTCCTTGCAACACGATTACAATTTTGGAATACGGCTCATGTCTTATTGTCATTAATTAGATCACAAGAGTAAGGTGGTGGATCGTTGCTATTGTTGCTCCACTACTGGCAATTCTGGTTTTGTTTCATGCTTTCCAT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_1043#0 CACGCGACCTGCCATGTCTGTGCTTCTGCTTCTCTTCTTGCCGCTCGCCGCCGCCCAACC 60 consensus_1043#1 ------------------------------------------------------------ consensus_1043#0 ATGGCAAGTATGCCAAGACAGCCGGGGCAAATACACATCAAACAGCACCTACCAAGCCAA 120 consensus_1043#1 ------------------------------------------------------------ consensus_1043#0 CATCCAATCGCTGTCGTCCACGCTCCCCGCGAAAGCCGCCGCGCCCAGCACCGGCCTCTT 180 consensus_1043#1 ------------------------------------------------------------ consensus_1043#0 CGCCACCCGCGTCGCCGGAAATGCCCCAGACACCGTGTACGCCCTTGCCTTCTGCCGCGG 240 consensus_1043#1 ------------------------------------------------------------ consensus_1043#0 GGACATCACCAACGCCTCCGCCTGCGCAGGCTGCGTGGCATCCGGTTTCCAGGACGCGCA 300 consensus_1043#1 ------------------------------------------------------------ consensus_1043#0 GCAGCTGTGCCCGTTCAACAAGGCTGCCTCCCTGTACTACGATCTCTGCCTCCTCCGCTT 360 consensus_1043#1 ------------------------------------------------------------ consensus_1043#0 CGCCGATGAAAACTTCCTCGCCACCAACAACAGCGATGTAGTCATGCTGATGAACTCACA 420 consensus_1043#1 ------------------------------------------------------------ consensus_1043#0 GAACTTCACGGCGAGCGTCGGCTCGGTCCGCCTCCTCCTCTTCACGCTGCTGAACGCCAC 480 consensus_1043#1 ------------------------------------------------------------ consensus_1043#0 AGCCGAGTCGGCAGCGAGCAGCTCGAGGAGGTTCACCACCTCGCGGTTGGACGTCAGCTC 540 consensus_1043#1 ----GAGTCGGCAGCGAGCAGCTCGAGGAGGTTCACCACCTCGCGGTTGGACGTCAGCTC 56 ******************************************************** consensus_1043#0 CCTCCCCACGCTGTACTGCCTTATGCAGTGCACGCCTGACCTGACGGCCGGAGAGTGCGC 600 consensus_1043#1 CCTCCCCACGCTGTACTGCCTTATGCAGTGCACGCCTGACCTGACGGCCGGAGAGTGCGC 116 ************************************************************ consensus_1043#0 GGCCTGCTTCGAGGATTTCCCGCGGTTGACGCTCCAGTACCTCGACGGTGCGCGAGGCGG 660 consensus_1043#1 GGCCTGCTTCGAGGATTTCCCGCGGTTGACGCTCCAGTACCTCGACGGTGCGCGAGGCGG 176 ************************************************************ consensus_1043#0 AAGGATTCTCGCGACACGCTGCACCATGAGGTACGAGATCTACCCGTTCTACTCAGGTGA 720 consensus_1043#1 AAGGATTCTCGCGACACGCTGCACCATGAGGTACGAGATCTACCCGTTCTACTCAGGTGA 236 ************************************************************ consensus_1043#0 CACGATGCTGCGTATCATCAACTTGGCAACCACGGTGCCCGAGATGAACACCACGGCACC 780 consensus_1043#1 CACGATGCTGCGTATCATCAACTTGGCAACCACGGTGCCCGAGATGAACACCACGGCACC 296 ************************************************************ consensus_1043#0 AACTACTCCGGTCACCGTGTATCCGCAGCCAGCGGGGCCAGG-TGGT--GCGAGCGCGCC 837 consensus_1043#1 AACTACTCCGGTCACCGTGTATCCGCACNCAGCGGGCCCAGNGTGGGTGGCGAGCGCGCC 356 *************************** ******* **** *** *********** consensus_1043#0 ACCA-CCGCCGCAGCCAAACCCCGGCATCCCGGAACAGGCACAGCGCTCGCCCTATCA-- 894 consensus_1043#1 ACCNACCGCCGCAGTCAAACCCCGGCATCCCGGAACAGGCACAGCGCTCGCCCTGTCAGT 416 *** ********* *************************************** *** consensus_1043#0 CAAGAGTAAGGTGTGGATCGTTGCTATTGTTGCTCCACTACTGGCAATTCTGTTTTGTTT 954 consensus_1043#1 CTTGCATGAATAGTGAATACT--CTCTCCTTGCAACACGATTA-CAATTTTGGAATACGG 473 * * * * *** ** * ** * **** *** * * ***** ** * consensus_1043#0 CATGCTTTCCATTGT-ATGGATCAGAAGAGGTAGAAAAGGAGAGGTAAACATGCAGAACA 1013 consensus_1043#1 CTCATGTCTTATTGTCATTAATTAGATCACAAGAGTAAGGTGGTGGATCGTTGC----TA 529 * * ***** ** ** *** * **** * * * *** * consensus_1043#0 ATATTGCTGCAGTAAATAGGCTGGAAGAAGACGCACTTGTTTGGAGATTGGAAGAGAGGA 1073 consensus_1043#1 TTGTTGCTCCACTA------CTGGCA-ATTCTGGTTTTGTTTCATGCTTTCCAT------ 576 * ***** ** ** **** * * * ****** * ** * consensus_1043#0 GTTCAGAGTTCTCTCTTTTTGAATTTTCTGAGTTGCTGGAGGCTACAGACAACTTCGCAG 1133 consensus_1043#1 ------------------------------------------------------------ consensus_1043#0 CAGAGAACAGGCTTGGACAAGGAGGCTTTGGCCCTGTATACAAGGGTCAATTGCATGATG 1193 consensus_1043#1 ------------------------------------------------------------ consensus_1043#0 GGGTGGAAGTTGCAGTTAAAAGGCTTGCTTCACAATCAGGACAGGGTTTCACTGAGTTCA 1253 consensus_1043#1 ------------------------------------------------------------ consensus_1043#0 AAAATGAAGTTGAACTTATAGCTAAACTACAACACACAAATCTTGTTAGGCTGCTGGGAT 1313 consensus_1043#1 ------------------------------------------------------------ consensus_1043#0 GCTGCATTCAGGGAGAGGAGAAAATATTGGTGTATGAATATTTGCCAAACAAAAGCTTAG 1373 consensus_1043#1 ------------------------------------------------------------ consensus_1043#0 ATTTCTTTATCTTTGATGTCGACAAAACCAGTTTAATTGACTGGAATAAACGTTGCGGAA 1433 consensus_1043#1 ------------------------------------------------------------ consensus_1043#0 TAATTGAAGGGATAGCTCAAGGTCTTCTTTACTTGCACAAGCACTCTCGGCTCCGTGTCA 1493 consensus_1043#1 ------------------------------------------------------------ consensus_1043#0 TACACAGAGACCTTAAAGCCAGCAACATTCTTTTGGACCAGGACATGAATCCTAAAATAT 1553 consensus_1043#1 ------------------------------------------------------------ consensus_1043#0 CTGATTTTGGGCTAGCAAAAATTTTTAGCTCTAATAATACCGAAGGAAACACAAAGAGGG 1613 consensus_1043#1 ------------------------------------------------------------ consensus_1043#0 TGGTGGGAACATATGGTTACATGTCACCAGAGTATGCCTCTGAAGGTATCTACTCGATCA 1673 consensus_1043#1 ------------------------------------------------------------ consensus_1043#0 AATCTGATGTGTTTAGCTTTGGTGTTCTTCTTCTTGAGATACTTAGCGGAAAAAGGAATT 1733 consensus_1043#1 ------------------------------------------------------------ consensus_1043#0 CTGGTTTCCACCAATACGGAGATTTTCTTAACCTCCTAGGCTATGCATGGCATATGTGGG 1793 consensus_1043#1 ------------------------------------------------------------ consensus_1043#0 AAGAAGGGAGATGGCTTGATATAATAGGAGCGTCAATTCCTCAGACGATCCCTACAGAAG 1853 consensus_1043#1 ------------------------------------------------------------ consensus_1043#0 GGTTGAGGAAGTACATCAACATTGCGCTTATGTGCGTGCAAGAGAACGCAGATGATCGAC 1913 consensus_1043#1 ------------------------------------------------------------ consensus_1043#0 CGACCATGTCAGATGTCGTAGCGATGCTAAGTAGCGAGAGTGCGGTTCTTCCTGAACCTA 1973 consensus_1043#1 ------------------------------------------------------------ consensus_1043#0 AGCACCCGGCATACTACAACCTAAGGGTATCAAAAGTACAGGGATCTACTAATGTTGTTC 2033 consensus_1043#1 ------------------------------------------------------------ consensus_1043#0 AATCAATCAGTGTGAATGATGTAACTATCACTTCCAACCCAGAGGGTAGATAGCTGGTAC 2093 consensus_1043#1 ------------------------------------------------------------ consensus_1043#0 CTTTGGGTCTCATTTCCAGCTCTCCATATCTCTCGTATAACAGCATCAAGGCATCAATTG 2153 consensus_1043#1 ------------------------------------------------------------ consensus_1043#0 TAATAATGAAGGTATGTGGATGCAGTTGTCGTGGCAGCCGATCTCATCCAGTCTTATTTG 2213 consensus_1043#1 ------------------------------------------------------------ consensus_1043#0 CAGACAGTGGCGGATCCAGAAAATCGATTCGTTGGTGTTATAACATGTCTATCGGTGTCA 2273 consensus_1043#1 ------------------------------------------------------------ consensus_1043#0 TAATATGGTAATTATGCTTAGATCATGGTGTTATGACATATGGATAAGCAGTTTTGCTAT 2333 consensus_1043#1 ------------------------------------------------------------ consensus_1043#0 ATGTTTGCCGAAAGTCGTCGGTGTCGCCTGACACCGGTCCTAGTAATGTAGATCCGCCCC 2393 consensus_1043#1 ------------------------------------------------------------ consensus_1043#0 TGTTTGCAGAGTTGTTTTCATAGTCAAGTTTCCCTTCCCCTTTATAAGGATAGTTGCTTT 2453 consensus_1043#1 ------------------------------------------------------------ consensus_1043#0 TAAGATATTTTGTTTTGAGGCGATGTATCAGGGATTTACTTAATAACTAGAAAGGTAGCC 2513 consensus_1043#1 ------------------------------------------------------------ consensus_1043#0 CGCGCACATGCGCGGGCAGCTTCTTATGTAATGTGAGTGAAATTTTATTATGAATATTTA 2573 consensus_1043#1 ------------------------------------------------------------ consensus_1043#0 TGTGCAGGGT 2583 consensus_1043#1 ---------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||