Home
Who am I
Technology
EST Assembly
Contact

These datas are free for academic use only, please contact me for any other use.

Oryza sativa
cluster # 10430 cluster # 10430       Sequences # 7       consensus # 4


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_10430#0 length = 1244 sequences # 4  
consensus_10430#1 length = 650 sequences # 1  
consensus_10430#2 length = 627 sequences # 1  
consensus_10430#3 length = 598 sequences # 1  

consensusID : consensus_10430#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 4
consensus length = 1244
fasta sequence
                              [CACTGCATGGCAGGAGGCTTGGCATCATCAGCAAGCCATTAGCCATGGATAAGGCAGGCGGCA-CGGCGAGGCGCCGCCGG-AGCCGGAGCCGGCGGCGGCGGCGACGGTGAAGTCAATCGTCGTGTACCCCATCAAATCATGCAGGGGCATCTCCGTGCCCCAGGCCGCCATCACCTCCACCGGGTTGAGGTGGGATCGACCGTGGCTGGTGATGAACTCCGCA-GGAGAGCCTTCACCCAGCGAGTGGAGCCCAAGCTCGCGCTGATTGAGGTGGAGATGCCGCAAGAGGCGTTCACTGAGTGGCAGCCAACGCCTGATTCTCACATGGTTATCAGAGCACCC-GGATTGGATCCACTGAAGATCCCTCTTGGCGCGAAACGTGCCACAGTTGATGATGTCTCTATCTGGGAGTGGTCTGGTTCTGCGTATGATGAAGGAGATGAAGCGGCCGAATGGTTTTCCAGTTACTTTGGGAAGCCGACTCGACTCGTACGGTTTAATGAAGCATCAGAAATTAGAGAGACCAATCCTGACTATGCTCAAGGTTACAAAGTTCTGTTTGCTGACGACTTCCCATTCCTGCTGGCCTCCCAGGGCTCAGTGGATGCACTAAACAGTATCCTTAAAGAACCTGTACCAATGAATCGCTTCAGACCAAATATTATAGTTGATGGATGTCATCCATACTCGGAGGATCTGTGGAAGACCATAAAGATAGGGAAACTGACATTTTTAGGTGTCAAGTTATGTGATCGTTGCAAGGTGCCTACTATTAATCAAGATAATGGGATTCCTGGTGAGGAACCAACGGAAGCTCTACAAGCACTCCGGTCTGATGAAGTGTTGCGGCCGAGCCACAAAAATAAACGCCGGGTCTATTTTGGGCAAAATTTAGTCTGCAAGGAATCTCTGTCGGCAAAAGATGAAGGAAGGATCATCAAGGTCGGCGATCCAGTTTATGTTCTTGAGTCATTCCCTTCTTCAGATGAAGTTCCAGCATGAGCAAGGAGGGCACAGTGGCAACCGTTCAGAGGTTAGTAATAGGTCGATTTATGCGCGCATGGATGTAAATCTTACGCTGCAGATAAGGCTTGAGAAAGTGTGCTATGTGCCAGAATAAACATTACCATCTGGCACTGAAAAATGTTGCCCATACAGTCGATGGTTTTTCAGTGATCACTGTTGTGCAGTTACCTGTACTTTCATCAGATGTTACCTCGATTGCCTTTATGATAAAAAAAAAA]

[+] EMBL AK101993             [CACTGCATGGCAGGAGGCTTGGCATCATCAGCAAGCCATTAGCCATGGATAAGGCAGGCGGCAGCGGCGAGGCGCCGCCGG AGCCGGAGCCGGCGGCGGCGGCGACGGTGAAGTCAATCGTCGTGTACCCCATCAAATCATGCAGGGGCATCTCCGTGCCCCAGGCCGCCATCACCTCCACCGGGTTGAGGTGGGATCGACCGTGGCTGGTGATGAACTCCGCAGGGAGAGCCTTCACCCAGCGAGTGGAGCCCAAGCTCGCGCTGATTGAGGTGGAGATGCCGCAAGAGGCGTTCACTGAGTGGCAGCCAACGCCTGATTCTCACATGGTTATCAGAGCACCC GGATTGGATCCACTGAAGATCCCTCTTGGCGCGAAACGTGCCACAGTTGATGATGTCTCTATCTGGGAGTGGTCTGGTTCTGCGTATGATGAAGGAGATGAAGCGGCCGAATGGTTTTCCAGTTACTTTGGGAAGCCGACTCGACTCGTACGGTTTAATGAAGCATCAGAAATTAGAGAGACCAATCCTGACTATGCTCAAGGTTACAAAGTTCTGTTTGCTGACGACTTCCCATTCCTGCTGGCCTCCCAGGGCTCAGTGGATGCACTAAACAGTATCCTTAAAGAACCTGTACCAATGAATCGCTTCAGACCAAATATTATAGTTGATGGATGTCATCCATACTCGGAGGATCTGTGGAAGACCATAAAGATAGGGAAACTGACATTTTTAGGTGTCAAGTTATGTGATCGTTGCAAGGTGCCTACTATTAATCAAGATAATGGGATTCCTGGTGAGGAACCAACGGAAGCTCTACAAGCACTCCGGTCTGATGAAGTGTTGCGGCCGAGCCACAAAAATAAACGCCGGGTCTATTTTGGGCAAAATTTAGTCTGCAAGGAATCTCTGTCGGCAAAAGATGAAGGAAGGATCATCAAGGTCGGCGATCCAGTTTATGTTCTTGAGTCATTCCCTTCTTCAGATGAAGTTCCAGCATGAGCAAGGAGGGCACAGTGGCAACCGTTCAGAGGTTAGTAATAGGTCGATTTATGCGCGCATGGATGTAAATCTTACGCTGCAGATAAGGCTTGAGAAAGTGTGCTATGTGCCAGAATAAACATTACCATCTGGCACTGAAAAATGTTGCCCATACAGTCGATGGTTTTTCAGTGATCACTGTTGTGCAGTTACCTG                                               ]
[+] EMBL C98632               [                             AGCAAGCCATTAGCCATGGATAAGGCAGGCGGCA CGGCGAGGCGCCGCCGGNAGCCGGAGCCGGCGGCGNCGGCGACGGTGAAGTCAATCGTCGTGTACCCCATCAAATCATGCAGGGGCATCTCCGTGCCCCAGGCCGCCATCACCTCCACCGGGTTGAGGTGGGATCGACCGTGGCTGGTGATGAACTCCGCA GGAGAGCCTTCACCCAGCGAGTGGAGCCCAAGCTCGCGCTGATTGAGGTGGAGATGCCGCAAGAGGCGTTCACTGAGTGGCAGCCAACGCCTGATTCTCACATGGTTATCAGAGCACCCGGGATTGGATCCACTGAAGATCCCTCTTGGCGCGAAACGTGCCACAGTTGATGATGTCTCTATCTGGGAGTGGTCTGGTTCTGCGTATGATGAAGGAGATGAGGCGGCCGAATGGTTTTCCAGTTACTTTGGGAAGCCGACTCGACTCGTACGGTTTAATGAAGCATCAGAAATTAGAGAGACCAATCCTGACTATGCTCAAGGTT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                         ]
[+] EMBL C26517               [                                     ATTAGCCATGGATAAGGCAGGCGGCA CGGCGAGGCGCCGCGNN AGCCGGAGCCGGC GCGTCGGCGACGGTGAAGTCAATCGTCGTGTACCCCATCAAATCATGCAGGGGCATCTCCGTGCCCCAGGCCGCCATCACCTCCACCGGGTTGAGGTGGGATCGACCGTGGCTNGTGATGAACTCCGCA GGAGAGCCTTCACCCAGCGAGTGGAGCCCAAGCTCGCGNTGATTNAGGTGGAGATTCCGCAAGAGGCGTTCA                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      ]
[+] EMBL BI805059             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  TAATGGGATTCCTGGTGAGGAACCAACGGAAGCTCTACAAGCACTCCGGTCTGATGAAGTGTTGCGGCCGAGCCAC AAAATAAACGCCGGGTCTATTTTGGGCCAAATTTAGTCTGCAAGGAATCTCTGTCGGCCAAAGATGAAGGAAGGATCATCAAGGTCGGCGATCCAGTTTATGTTCTTGAGTCATTCCCTTCTTCAGATGAAGTTCCAGCATGAGCAAGGAGGGCACAGTGGCAACCGTTCAGAGGTTAGTAATAGGTCGATTTATGCGCGCATGGATGTAAATCTTACGCTGCAGATAAGGCTTGAGAAAGTGTGCTATGTGCCAGAATAAACATTACCATCTGGCACTGAAAAATGTTGCCCATAC GTCGATGGTTTTTCAGTGATCACTGTTGTGCAGTTACCTGTACTTTCATCAGATGTTACCTCGATTGCCTTTATGATAAAAAAAAAA]


>consensus_10430#0 CACTGCATGGCAGGAGGCTTGGCATCATCAGCAAGCCATTAGCCATGGATAAGGCAGGCG GCACGGCGAGGCGCCGCCGGAGCCGGAGCCGGCGGCGGCGGCGACGGTGAAGTCAATCGT CGTGTACCCCATCAAATCATGCAGGGGCATCTCCGTGCCCCAGGCCGCCATCACCTCCAC CGGGTTGAGGTGGGATCGACCGTGGCTGGTGATGAACTCCGCAGGAGAGCCTTCACCCAG CGAGTGGAGCCCAAGCTCGCGCTGATTGAGGTGGAGATGCCGCAAGAGGCGTTCACTGAG TGGCAGCCAACGCCTGATTCTCACATGGTTATCAGAGCACCCGGATTGGATCCACTGAAG ATCCCTCTTGGCGCGAAACGTGCCACAGTTGATGATGTCTCTATCTGGGAGTGGTCTGGT TCTGCGTATGATGAAGGAGATGAAGCGGCCGAATGGTTTTCCAGTTACTTTGGGAAGCCG ACTCGACTCGTACGGTTTAATGAAGCATCAGAAATTAGAGAGACCAATCCTGACTATGCT CAAGGTTACAAAGTTCTGTTTGCTGACGACTTCCCATTCCTGCTGGCCTCCCAGGGCTCA GTGGATGCACTAAACAGTATCCTTAAAGAACCTGTACCAATGAATCGCTTCAGACCAAAT ATTATAGTTGATGGATGTCATCCATACTCGGAGGATCTGTGGAAGACCATAAAGATAGGG AAACTGACATTTTTAGGTGTCAAGTTATGTGATCGTTGCAAGGTGCCTACTATTAATCAA GATAATGGGATTCCTGGTGAGGAACCAACGGAAGCTCTACAAGCACTCCGGTCTGATGAA GTGTTGCGGCCGAGCCACAAAAATAAACGCCGGGTCTATTTTGGGCAAAATTTAGTCTGC AAGGAATCTCTGTCGGCAAAAGATGAAGGAAGGATCATCAAGGTCGGCGATCCAGTTTAT GTTCTTGAGTCATTCCCTTCTTCAGATGAAGTTCCAGCATGAGCAAGGAGGGCACAGTGG CAACCGTTCAGAGGTTAGTAATAGGTCGATTTATGCGCGCATGGATGTAAATCTTACGCT GCAGATAAGGCTTGAGAAAGTGTGCTATGTGCCAGAATAAACATTACCATCTGGCACTGA AAAATGTTGCCCATACAGTCGATGGTTTTTCAGTGATCACTGTTGTGCAGTTACCTGTAC TTTCATCAGATGTTACCTCGATTGCCTTTATGATAAAAAAAAAA



consensusID : consensus_10430#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 650
fasta sequence
                              [TCAAGGTTACAAAGTTCTGTTTGCTGACGACTTCCCATTCCTGNTGNCCTCCCCAGGGCTCAGTGGATGCACTAAACAGTATCCTTAAAGACCCTGTACCAATGATCGCTTCAGACCAAATATTATAGTTGATGGATGTCATCCATACTCGGAGGATCTGTGGAAGACCATAAAGATAGGGAAACTGACATTTTTAGGTGTCAAGTTATGTGATCGTTGCAAGGTGCCTACTATTAATCAAGATAATGGGATTCCTGGTGAGGAACCAACGGAAGCTCTACAAGCACTCCGGTCTGATGAAGTGTTGCGGCCGAGCCACAAAAATAAACGCCGGGTCTATTTTGGGCAAAATTTAGTCTGCAAGGAATCTCTGTCGGCAAAAGATGAAGGAAGGATCATCAAGGTCGGCGATCCAGTTTATGTTCTTGAGTCATTCCCTTCTTCAGATGAAGTTCCAGCATGAGCAAGGAGGGCACAGTGGCAACCGTTCAGAGGTTAGTAATAGGTCGATTTATGCGCGCATGGATGTAAATCTTACGCTGCAGATAAGGCTTGAGAAAGTGTGCTATGTGCCAGAATAAACATTACCATCTGGCACTGAAAAATGTTGCCCATACAGTCGATGGTTTTTCAGTGAAAAAAAAAAAAAA]

[+] EMBL AU077933             [TCAAGGTTACAAAGTTCTGTTTGCTGACGACTTCCCATTCCTGNTGNCCTCCCCAGGGCTCAGTGGATGCACTAAACAGTATCCTTAAAGACCCTGTACCAATGATCGCTTCAGACCAAATATTATAGTTGATGGATGTCATCCATACTCGGAGGATCTGTGGAAGACCATAAAGATAGGGAAACTGACATTTTTAGGTGTCAAGTTATGTGATCGTTGCAAGGTGCCTACTATTAATCAAGATAATGGGATTCCTGGTGAGGAACCAACGGAAGCTCTACAAGCACTCCGGTCTGATGAAGTGTTGCGGCCGAGCCACAAAAATAAACGCCGGGTCTATTTTGGGCAAAATTTAGTCTGCAAGGAATCTCTGTCGGCAAAAGATGAAGGAAGGATCATCAAGGTCGGCGATCCAGTTTATGTTCTTGAGTCATTCCCTTCTTCAGATGAAGTTCCAGCATGAGCAAGGAGGGCACAGTGGCAACCGTTCAGAGGTTAGTAATAGGTCGATTTATGCGCGCATGGATGTAAATCTTACGCTGCAGATAAGGCTTGAGAAAGTGTGCTATGTGCCAGAATAAACATTACCATCTGGCACTGAAAAATGTTGCCCATACAGTCGATGGTTTTTCAGTGAAAAAAAAAAAAAA]


>consensus_10430#1 TCAAGGTTACAAAGTTCTGTTTGCTGACGACTTCCCATTCCTGNTGNCCTCCCCAGGGCT CAGTGGATGCACTAAACAGTATCCTTAAAGACCCTGTACCAATGATCGCTTCAGACCAAA TATTATAGTTGATGGATGTCATCCATACTCGGAGGATCTGTGGAAGACCATAAAGATAGG GAAACTGACATTTTTAGGTGTCAAGTTATGTGATCGTTGCAAGGTGCCTACTATTAATCA AGATAATGGGATTCCTGGTGAGGAACCAACGGAAGCTCTACAAGCACTCCGGTCTGATGA AGTGTTGCGGCCGAGCCACAAAAATAAACGCCGGGTCTATTTTGGGCAAAATTTAGTCTG CAAGGAATCTCTGTCGGCAAAAGATGAAGGAAGGATCATCAAGGTCGGCGATCCAGTTTA TGTTCTTGAGTCATTCCCTTCTTCAGATGAAGTTCCAGCATGAGCAAGGAGGGCACAGTG GCAACCGTTCAGAGGTTAGTAATAGGTCGATTTATGCGCGCATGGATGTAAATCTTACGC TGCAGATAAGGCTTGAGAAAGTGTGCTATGTGCCAGAATAAACATTACCATCTGGCACTG AAAAATGTTGCCCATACAGTCGATGGTTTTTCAGTGAAAAAAAAAAAAAA



consensusID : consensus_10430#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 627
fasta sequence
                              [GGATNCACTTAAACNGTATCCCTTAAAAGAACCTGTACCCAATGAATCCGCTTCCAGACCCAAATATTTATAGTTGATGGATGTCATCCATACTCGGAGGATCTNTGGAAGACCNTAAAGNTAGGGAAACTGACATTTTTAGGTGTCAAGTTATGTGATCGTTGCAAGGTGCCTACTATTAATCAAGATAATGGGATTCCTGGTGAGGAACCAACGGAAGCTCTACAAGCACTCCGGTCTGATGAAGTGTTGCGGCCGAGCCACAAAAATAAACGCCGGGTCTATTTTGGGCAAAATTTAGTCTGCCAAGGAATCTCTGTCGGCAAAAGATGAAGGAAGGATCATCAAGGTCGGCGATCCAGTTTATGTTCTTGAGTCATTCCCTTCTTCAGATGAAGTTCCAGCATGAGCAAGGAGGGCACAGTGGCAACCGTTCAGAGGTTAGTAATAGGTCGATTTATGCGCGCATGGATGTAAATCTTACGCTGCAGATAAGGCTTGAGAAAGTGTGCTATGTGCCAGAATAAACATTACCATCTGGCACTGAAAAATGTTGCCCATACAGTCGATGGTTTTTCAGTGATCACTGTTGTGCAGTTAAAAAAAAAAAAAAAAAAAAAAAAAAAA]

[+] EMBL C98633               [GGATNCACTTAAACNGTATCCCTTAAAAGAACCTGTACCCAATGAATCCGCTTCCAGACCCAAATATTTATAGTTGATGGATGTCATCCATACTCGGAGGATCTNTGGAAGACCNTAAAGNTAGGGAAACTGACATTTTTAGGTGTCAAGTTATGTGATCGTTGCAAGGTGCCTACTATTAATCAAGATAATGGGATTCCTGGTGAGGAACCAACGGAAGCTCTACAAGCACTCCGGTCTGATGAAGTGTTGCGGCCGAGCCACAAAAATAAACGCCGGGTCTATTTTGGGCAAAATTTAGTCTGCCAAGGAATCTCTGTCGGCAAAAGATGAAGGAAGGATCATCAAGGTCGGCGATCCAGTTTATGTTCTTGAGTCATTCCCTTCTTCAGATGAAGTTCCAGCATGAGCAAGGAGGGCACAGTGGCAACCGTTCAGAGGTTAGTAATAGGTCGATTTATGCGCGCATGGATGTAAATCTTACGCTGCAGATAAGGCTTGAGAAAGTGTGCTATGTGCCAGAATAAACATTACCATCTGGCACTGAAAAATGTTGCCCATACAGTCGATGGTTTTTCAGTGATCACTGTTGTGCAGTTAAAAAAAAAAAAAAAAAAAAAAAAAAAA]


>consensus_10430#2 GGATNCACTTAAACNGTATCCCTTAAAAGAACCTGTACCCAATGAATCCGCTTCCAGACC CAAATATTTATAGTTGATGGATGTCATCCATACTCGGAGGATCTNTGGAAGACCNTAAAG NTAGGGAAACTGACATTTTTAGGTGTCAAGTTATGTGATCGTTGCAAGGTGCCTACTATT AATCAAGATAATGGGATTCCTGGTGAGGAACCAACGGAAGCTCTACAAGCACTCCGGTCT GATGAAGTGTTGCGGCCGAGCCACAAAAATAAACGCCGGGTCTATTTTGGGCAAAATTTA GTCTGCCAAGGAATCTCTGTCGGCAAAAGATGAAGGAAGGATCATCAAGGTCGGCGATCC AGTTTATGTTCTTGAGTCATTCCCTTCTTCAGATGAAGTTCCAGCATGAGCAAGGAGGGC ACAGTGGCAACCGTTCAGAGGTTAGTAATAGGTCGATTTATGCGCGCATGGATGTAAATC TTACGCTGCAGATAAGGCTTGAGAAAGTGTGCTATGTGCCAGAATAAACATTACCATCTG GCACTGAAAAATGTTGCCCATACAGTCGATGGTTTTTCAGTGATCACTGTTGTGCAGTTA AAAAAAAAAAAAAAAAAAAAAAAAAAA



consensusID : consensus_10430#3
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 598
fasta sequence
                              [ATAAGGCAGGCGGCAGCGGCGAGGCGCCGCCGGAGCCGGAGCCGGCGGCGGCGGCGACGGTGAAGTCAATCGTCGTGTACCCCATCAAATCATGCAGGGGCATCTCCGTGCCCCAGGCCGCCATCACCTCCACCGGGTTGAGGTGGGATCGACCGTGGCTGGTGATGAACTCCGCAGGGAGAGCCTTCACCCAGCGAGTGGAGCCCAAGCTCGCGCTGATTGAGGTGGAGATGCCGCAAGAGGCGTTCACTGAGTGGCAGCCAACGCCTGATTCTCACATGGTTATCANANCACCCGGATTGGATCCACTGAAGATTCCTCTTGGCGCGAAACNTGCCCCAGTTGAATNATGTCTCTATCTGGGAATGGTCTGGTTCNGCNTTTTGANAAAAGAAAATAAAGGGGGCCAAATGGTTTCCCCNTTTCTTTNGGAAACCCAANCCNCCCTTCNGGTTTTTGAACCCCCCAATTTTAAAAAACAANCCCANTTTCNCCAGGTTCNAATTNNTTTTTNTGAAAAATCCNTTCCTNNNGGCCCCGGGNTNTTGAAANNTAAAATTTTCTTNAAAACNTTCCTTTAATCCTCCNNACATTTTTT]

[-] EMBL AA753857             [ATAAGGCAGGCGGCAGCGGCGAGGCGCCGCCGGAGCCGGAGCCGGCGGCGGCGGCGACGGTGAAGTCAATCGTCGTGTACCCCATCAAATCATGCAGGGGCATCTCCGTGCCCCAGGCCGCCATCACCTCCACCGGGTTGAGGTGGGATCGACCGTGGCTGGTGATGAACTCCGCAGGGAGAGCCTTCACCCAGCGAGTGGAGCCCAAGCTCGCGCTGATTGAGGTGGAGATGCCGCAAGAGGCGTTCACTGAGTGGCAGCCAACGCCTGATTCTCACATGGTTATCANANCACCCGGATTGGATCCACTGAAGATTCCTCTTGGCGCGAAACNTGCCCCAGTTGAATNATGTCTCTATCTGGGAATGGTCTGGTTCNGCNTTTTGANAAAAGAAAATAAAGGGGGCCAAATGGTTTCCCCNTTTCTTTNGGAAACCCAANCCNCCCTTCNGGTTTTTGAACCCCCCAATTTTAAAAAACAANCCCANTTTCNCCAGGTTCNAATTNNTTTTTNTGAAAAATCCNTTCCTNNNGGCCCCGGGNTNTTGAAANNTAAAATTTTCTTNAAAACNTTCCTTTAATCCTCCNNACATTTTTT]


>consensus_10430#3 ATAAGGCAGGCGGCAGCGGCGAGGCGCCGCCGGAGCCGGAGCCGGCGGCGGCGGCGACGG TGAAGTCAATCGTCGTGTACCCCATCAAATCATGCAGGGGCATCTCCGTGCCCCAGGCCG CCATCACCTCCACCGGGTTGAGGTGGGATCGACCGTGGCTGGTGATGAACTCCGCAGGGA GAGCCTTCACCCAGCGAGTGGAGCCCAAGCTCGCGCTGATTGAGGTGGAGATGCCGCAAG AGGCGTTCACTGAGTGGCAGCCAACGCCTGATTCTCACATGGTTATCANANCACCCGGAT TGGATCCACTGAAGATTCCTCTTGGCGCGAAACNTGCCCCAGTTGAATNATGTCTCTATC TGGGAATGGTCTGGTTCNGCNTTTTGANAAAAGAAAATAAAGGGGGCCAAATGGTTTCCC CNTTTCTTTNGGAAACCCAANCCNCCCTTCNGGTTTTTGAACCCCCCAATTTTAAAAAAC AANCCCANTTTCNCCAGGTTCNAATTNNTTTTTNTGAAAAATCCNTTCCTNNNGGCCCCG GGNTNTTGAAANNTAAAATTTTCTTNAAAACNTTCCTTTAATCCTCCNNACATTTTTT



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_10430#1      ------------------------------------------------------------
consensus_10430#2      ------------------------------------------------------------
consensus_10430#0      CACTGCATGGCAGGAGGCTTGGCATCATCAGCAAGCCATTAGCCATGGATAAGGCAGGCG 60
consensus_10430#3      ------------------------------------------------------------
                                                                                   

consensus_10430#1      ------------------------------------------------------------
consensus_10430#2      ------------------------------------------------------------
consensus_10430#0      GCACGGCGAGGCGCCGCCGGAGCCGGAGCCGGCGGCGGCGGCGACGGTGAAGTCAATCGT 120
consensus_10430#3      ------------------------------------------------------------
                                                                                   

consensus_10430#1      ------------------------------------------------------------
consensus_10430#2      ------------------------------------------------------------
consensus_10430#0      CGTGTACCCCATCAAATCATGCAGGGGCATCTCCGTGCCCCAGGCCGCCATCACCTCCAC 180
consensus_10430#3      ------------------------------------------------------------
                                                                                   

consensus_10430#1      ------------------------------------------------------------
consensus_10430#2      ------------------------------------------------------------
consensus_10430#0      CGGGTTGAGGTGGGATCGACCGTGGCTGGTGATGAACTCCGCAGGAGAGCCTTCACCCAG 240
consensus_10430#3      ------------------------------------------------------------
                                                                                   

consensus_10430#1      ------------------------------------------------------------
consensus_10430#2      ------------------------------------------------------------
consensus_10430#0      CGAGTGGAGCCCAAGCTCGCGCTGATTGAGGTGGAGATGCCGCAAGAGGCGTTCACTGAG 300
consensus_10430#3      ------------------------------------------------------------
                                                                                   

consensus_10430#1      ------------------------------------------------------------
consensus_10430#2      ------------------------------------------------------------
consensus_10430#0      TGGCAGCCAACGCCTGATTCTCACATGGTTATCAGAGCACCCGGATTGGATCCACTGAAG 360
consensus_10430#3      ------------------------------------------------------------
                                                                                   

consensus_10430#1      ------------------------------------------------------------
consensus_10430#2      ------------------------------------------------------------
consensus_10430#0      ATCCCTCTTGGCGCGAAACGTGCCACAGTTGATGATGTCTCTATCTGGGAGTGGTCTGGT 420
consensus_10430#3      ------------------------------------------------------------
                                                                                   

consensus_10430#1      ------------------------------------------------------------
consensus_10430#2      ------------------------------------------------------------
consensus_10430#0      TCTGCGTATGATGAAGGAGATGAAGCGGCCGAATGGTTTTCCAGTTACTTTGGGAAGCCG 480
consensus_10430#3      ------------------------------------------------------------
                                                                                   

consensus_10430#1      -----------------------------------------------------------T 1
consensus_10430#2      ------------------------------------------------------------
consensus_10430#0      ACTCGACTCGTACGGTTTAATGAAGCATCAGAAATTAGAGAGACCAATCCTGACTATGCT 540
consensus_10430#3      ------------------------------------------------------------
                                                                                   

consensus_10430#1      CAAGGTTACAAAGTTCTGTTTGCTGACGACTTCCCATTCCTGNTGNCCTCCCCAGGGCTC 61
consensus_10430#2      ------------------------------------------------------------
consensus_10430#0      CAAGGTTACAAAGTTCTGTTTGCTGACGACTTCCCATTCCTGCTGGCCTCCC-AGGGCTC 599
consensus_10430#3      ----------------ATAAGGCAGGCGGCAGCGGCGAGGCGCCGCCGGAGCCGGAGC-C 43
                                                                                   

consensus_10430#1      AGTGGATGCACT-AAACAGTATCCTT--AAAGACCCTGTACC-AATGA--TCGCTTC-AG 114
consensus_10430#2      ---GGATNCACTTAAACNGTATCCCTTAAAAGAACCTGTACCCAATGAATCCGCTTCCAG 57
consensus_10430#0      AGTGGATGCACT-AAACAGTATCCTT--AAAGAACCTGTACC-AATGAA-TCGCTTC-AG 653
consensus_10430#3      GGCGGCGGCGGC--GACGGTGAAGTC--AATCGTCGTGTACCCCATCAAATCATGCAGGG 99
                          **   *      ** **        **    * ******  ** *   *       *

consensus_10430#1      ACC-AAATATT-ATAGTTGATGGATGTCATCCATACTCGGAGGATCTGTGGAAGACCATA 172
consensus_10430#2      ACCCAAATATTTATAGTTGATGGATGTCATCCATACTCGGAGGATCTNTGGAAGACCNTA 117
consensus_10430#0      ACC-AAATATT-ATAGTTGATGGATGTCATCCATACTCGGAGGATCTGTGGAAGACCATA 711
consensus_10430#3      GC--ATCTCCGTGCCCCAGGCCGCCATCACCTCCACCGGGTTGAGGTGGGATCGACCGTG 157
                        *  *  *          *   *   *** *   **  **  **  *  *   **** * 

consensus_10430#1      AA-GATAGGGAAACTGACATTTTTAGGTGTCAAGTTATGTGATCGTTGCAAGGTGCCTAC 231
consensus_10430#2      AA-GNTAGGGAAACTGACATTTTTAGGTGTCAAGTTATGTGATCGTTGCAAGGTGCCTAC 176
consensus_10430#0      AA-GATAGGGAAACTGACATTTTTAGGTGTCAAGTTATGTGATCGTTGCAAGGTGCCTAC 770
consensus_10430#3      GCTGGTGATGAACTCCGCAGGGAGAGCCTTCACCCAGCGAGTGGAGCCCAAG----CTCG 213
                          * *   ***     **     **   ***      * *       ****    **  

consensus_10430#1      TATTAATCAAGATAATGGGATTCCTGGTGAGGAACCAACGGAAGCTCTACAAGCACTCCG 291
consensus_10430#2      TATTAATCAAGATAATGGGATTCCTGGTGAGGAACCAACGGAAGCTCTACAAGCACTCCG 236
consensus_10430#0      TATTAATCAAGATAATGGGATTCCTGGTGAGGAACCAACGGAAGCTCTACAAGCACTCCG 830
consensus_10430#3      CGCTGATTGAGGTG--GAGATGCCGCAAGAGGCGTTCACTGAGTGGCAGCCAACGCCTGA 271
                          * **  ** *   * *** **    ****     ** **    *  * * * *    

consensus_10430#1      GTCTGATGAAGTGTTGCGGCCGAGCCACAAAAATAAACGCCGGGTCTATTTTGG-GCAAA 350
consensus_10430#2      GTCTGATGAAGTGTTGCGGCCGAGCCACAAAAATAAACGCCGGGTCTATTTTGG-GCAAA 295
consensus_10430#0      GTCTGATGAAGTGTTGCGGCCGAGCCACAAAAATAAACGCCGGGTCTATTTTGG-GCAAA 889
consensus_10430#3      TTCTCACATGGTTATCANANCACCCGGATTGGATCCACTGAAGATTCCTCTTGGCGCGAA 331
                        *** *    **  *     *   *       **  **    * *   * **** ** **

consensus_10430#1      ATTTAGTCTGC----AAGGAATCTCTGTCGGCAAAAGATGAAGGAAGGATCATCAAGGTC 406
consensus_10430#2      ATTTAGTCTGCC---AAGGAATCTCTGTCGGCAAAAGATGAAGGAAGGATCATCAAGGTC 352
consensus_10430#0      ATTTAGTCTGC----AAGGAATCTCTGTCGGCAAAAGATGAAGGAAGGATCATCAAGGTC 945
consensus_10430#3      ACNTGCCCCAGTTGAATNATGTCTCTATCTGGGAATGGTCTGGTTCNGCNTTTTGANAAA 391
                       *  *   *       *     ***** ** *  ** * *   *    *    *  *    

consensus_10430#1      GGCGATCCAGTTTATGTTCTTGAGTCATTCCCTTCTTCAGATGAAGTTCCAGCATGAGCA 466
consensus_10430#2      GGCGATCCAGTTTATGTTCTTGAGTCATTCCCTTCTTCAGATGAAGTTCCAGCATGAGCA 412
consensus_10430#0      GGCGATCCAGTTTATGTTCTTGAGTCATTCCCTTCTTCAGATGAAGTTCCAGCATGAGCA 1005
consensus_10430#3      AGAAAATAAA---GGGGGCCAAATGGTTTCCCCNTTTCTTTNGGAAACCCAANCCNCCCT 448
                        *  *   *      *  *   *    *****   ***    * *   ***       * 

consensus_10430#1      AGGAGGGCACAGTGGCAACCGTTCAGAGGTTAGTAATAGGTCGATTTATGCGCGCATGGA 526
consensus_10430#2      AGGAGGGCACAGTGGCAACCGTTCAGAGGTTAGTAATAGGTCGATTTATGCGCGCATGGA 472
consensus_10430#0      AGGAGGGCACAGTGGCAACCGTTCAGAGGTTAGTAATAGGTCGATTTATGCGCGCATGGA 1065
consensus_10430#3      TCNGGTTTTTG-----AACCCCCCAATTTTAAAAAACAANCCCANTTTCNC-----CAGG 498
                           *           ****   **    * *  ** *   * * **   *       * 

consensus_10430#1      TGTAAATCTTACGCTGCAGATAAGGCTTGAGAAAGTGTGCTATGTGCCAGAATAAACATT 586
consensus_10430#2      TGTAAATCTTACGCTGCAGATAAGGCTTGAGAAAGTGTGCTATGTGCCAGAATAAACATT 532
consensus_10430#0      TGTAAATCTTACGCTGCAGATAAGGCTTGAGAAAGTGTGCTATGTGCCAGAATAAACATT 1125
consensus_10430#3      TTCNAATTNNTTTTTNTGAAAAATCCNTTCCTNNNGGCCCCGGGNTNTTGAA-ANNTAAA 557
                       *   ***       *    * **  * *        *  *   *     *** *   *  

consensus_10430#1      ACCATCTGGCACTGAAAAATGTTGCCCATACAGTCGATGGTTTTTCAGTGA--------- 637
consensus_10430#2      ACCATCTGGCACTGAAAAATGTTGCCCATACAGTCGATGGTTTTTCAGTGATCACTGTTG 592
consensus_10430#0      ACCATCTGGCACTGAAAAATGTTGCCCATACAGTCGATGGTTTTTCAGTGATCACTGTTG 1185
consensus_10430#3      ATTTTCT----TNAAAACNTTCCTTTAATCCTCCNNACATTTTTT--------------- 598
                       *   ***       ***  *       ** *     *   *****               

consensus_10430#1      -------AAAAAAAAAAAAA--------------------------------------- 650
consensus_10430#2      TGCAGTTAAAAAAAAAAAAAAAAAAAAAAAAAAAA------------------------ 627
consensus_10430#0      TGCAGTTACCTGTACTTTCATCAGATGTTACCTCGATTGCCTTTATGATAAAAAAAAAA 1244
consensus_10430#3      -----------------------------------------------------------
                                                                                  




Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)