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Oryza sativa
cluster # 10442 cluster # 10442       Sequences # 7       consensus # 3


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_10442#0 length = 1503 sequences # 5  
consensus_10442#1 length = 782 sequences # 1  
consensus_10442#2 length = 762 sequences # 1  

consensusID : consensus_10442#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 5
consensus length = 1503
fasta sequence
                              [CAGCTTCAGCTTTTGGCTTCTCCTATAGCCTCTTTTGACATCATATCAGTGCAGTGGCCGGCGGCGATATCATGCAGCAGCAGCAACGAGACTAGAGCTCTCTTCATCATCATATCGTCAAGCTGCCATAGATCGATCAGAGCTGGCTGCTGGCCGGCCGGTGATCCTTCCTATAATTTCCTAGCTTGTGTCATGGAAAAAACTAGTGCAGGCAAGGAGGAGGGCTCCGAGAGTAAGACGGCGGCGGCCAACAACGATGGGAGCTCGACGAGCAGTACTACGGAGGAGGAGGAATCCGGGGAGAGCCAGCGGCGCACGTCGTCGTCGTCGTCGGTGCGCCCCTACATCCGCTCCAAGAACCCTCGCCTCCGCTGGACGCCGGAGCTCCATCTCTCCTTCGTCCGCGCCGTCGACAGGCTCGGCGGCCAAGATCGTGCAACTCCTAAGCTCGTTCTTCAGTTGATGAATGTTAGAGGGCTTAGCATAGGCCATGTCAAGAGCCATCTCCAGATGTATAGAAGCAAGAAGATCGATGAGTCTGGCCAGGTGAT-AGGTGGTGGCTCATGGAGATCTTCAGATGAACAGCAGTATCATCATCTGCAAATGCAAGGTGGTGGTGACGGGGGACAAGCGTACAACCTTGGCCATCTTTCCTTGCCTGCAGCTCTTCATCATCGCCACATCACTGCTGGCTCCGGTACCATCTTGCAGTCCAGGGTTGCCAATGCATGGTCCCCATGGAGATGCCATGGATCATACTGGCTCCGTGCAGGCCATCACCTGCTTGTTGGATCAAAACCCTATTACCCACCACCACCAGCTGAAGCTAGAGCTAATACCAGCAGCAACCATCCAGATTTTGTCCAAGGCTCTTCTTCATCTCCAGATGATCATACCATGAACCATCAAAGACCAGTAGTGCTGAAAGAGATGATCTACAATGAGGGTAGTAACCATCAAGGAGGTCCTCTTAATCTCGATCTCTCACTCGATATCTGTCCGCGGGGCGAGAAGAGGAAGAGAGAATTGATCAGCTGGAGGAAATATGAGGAAGATCATGATCATACTACTATTGCTATTGGTGGTGATCAAGAAGCAGAGAGTTGTGCTACTGGGCTCTCTCTTTCTTTGTTCTGATCATGTCTCCCCTGTTGAAAGATGCATCATCAGAGTCCTACCACTACTATATTGCTGTGCTGTACTGGTCTGGTCCCTGGTGATATATCAGATATCACTAGCTAGATCATATGTCATTGTGGATGATAAATCAAATTAGGAAAGAAGAAAACTCATGCAACAGGGACAAGTACTCTTCATCTCACCATATGACTACACTGTGGTGATATTTTGTGGTACTTGTCCTTTTACGCATGTATCTAGAGGAAGATAAACATAAATTTATTGTATTTCTGTTGCACATTATCTTTCGTATCTTTTGATTAATATAGCTGATCCCGGTTGATCTAAAAAAAAAAAAAAAAAAANNAAAAAAAAAAAAAAAAA]

[+] EMBL AU172823             [CAGCTTCAGCTTTTGGCTTCTCCTATAGCCTCTTTTGACATCATATCAGTGCAGTGGCCGGCGGCGATATCATGCAGCAGCAGCAACGAGACTAGAGCTCTCTTCATCATCATATCGTCAAGCTGCCATAGATCGATCAGAGCTGGCTGCTGGCCGGCCGGTGATCCTTCCTATAATTTCCTAGCTTGTGTCATGGAAAAAACTAGTGCAGGCAAGGAGGAGGGCTCCGAGAGTAAGACGGCGGCGGCCAACAACGATGGGAGCTCGACGAGCAGTACTACGGAGGAGGAGGAATCCGGGGAGAGCCAGCGGCGCACGTCGTCGTCGTCGTCGGTGCGCCCCTACATCCGCTCCAAGAACCCTCGCCTCCGCTGGACGCCGGAGCTCCATCTCTCCTTCGTCCGCGCCGTCGACAGGCTCGGCGGCCAAGATCGTGCAACTCCTAAGCTCGTTCTTCAGTTGATGAATGTTAGAGGGCTTAGCATAGGCCATGTCAAGAGCCATCTCCAGATGTATAGAAGCAAGAAGATCGATGAGTCTGGCCAGGTGATAAGGTGGTGGCTCATGGAGA                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     ]
[+] EMBL AK107297             [                                              CAGTGCAGTGGCCGGCGGCGATATCATGCAGCAGCAGCAACGAGACTAGAGCTCTCTTCATCGTCATATCGTCAAGCTGCCATAGATCGATCAGAGCTGGCTGCTGGCCGGCCGGTGATCCTTCCTATAATTTCCTAGCTTGTGTCATGGAAAAAACTAGTGCAGGCAAGGAGGAGGGCTCCGAGAGTAAGACGGCGGCGGCCGACAACGATGGGAGCTCGACGAGCAGTACTACGGAGGAGGAGGAATCCGGGGAGAGCCAGCGGCGCACGTCGTCGTCGTCGTCGGTGCGCCCCTACATCCGCTCCAAGAACCCTCGCCTCCGCTGGACGCCGGAGCTCCATCTCTCCTTCGTCCGCGCCGTCGACAGGCTCGGCGGCCAAGATCGTGCAACTCCTAAGCTCGTTCTTCAGTTGATGAATGTTAGAGGGCTTAGCATAGGCCATGTCAAGAGCCATCTCCAGATGTATAGAAGCAAGAAGATCGATGAGTCTGGCCAGGTGAT AGGTGGTGGCTCATGGAGATCTTCAGATGAACAGCAGTATCATCATCTGCAAATGCAAGGTGGTGGTGACGGGGGACAAGCGTACAACCTTGGCCATCTTTCCTTGCCTGCAGCTCTTCATCATCGCCACATCACTGCTGGCTCCGGTACCATCTTGCAGTCCAGGGTTGCCAATGCATGGTCCCCATGGAGATGCCATGGATCATACTGGCTCCGTGCAGGCCATCACCTGCTTGTTGGATCAAAACCCTATTACCCACCACCACCAGCTGAAGCTAGAGCTAATACCAGCAGCAACCATCCAGATTTTGTCCAAGGCTCTTCTTCATCTCCAGATGATCATACCATGAACCATCAAAGACCAGTAGTGCTGAAAGAGATGATCTACAATGAGGGTAGTAACCATCAAGGAGGTCCTCTTAATCTCGATCTCTCACTCGATATCTGTCCGCGGGGCGAGAAGAGGAAGAGAGAATTGATCAGCTGGAGGAAATATGAGGAAGATCATGATCATACTACTATTGCTATTGGTGGTGATCAAGAAGCAGAGAGTTGTGCTACTGGGCTCTCTCTTTCTTTGTTCTGATCATGTCTCCCCTGTTGAAAGATGCATCATCAGAGTCCTACCACTACTATATTGCTGTGCTGTACTGGTCTGGTCCCTGGTGATATATCAGATATCACTAGCTAGATCATATGTCATTGTGGATGATAAATCAAATTAGGAAAGAAGAAAACTCATGCAACAGGGACAAGTACTCTTCATCTCACCATATGACTACACTGTGGTGATATTTTGTGGTACTTGTCCTTTTACGCATGTATCTAGAGGAAGATAAACATAAATTTATTGTATTTCTGTTGCACATTATCTTCCGTATCTTTTGATTAATATAGCTGATCC                                                ]
[+] EMBL CF324977             [                                                                                                                                                                                                                                                                                                                                                                                                                                                  TGCAACTCCTAAGCTCGTTCTTCAGTTGATGAATGTTAGAGGGCTTAGCATAGGCCATGTCAAGAGCCATCTCCAGATGTATAGAAGCAAGAAGATCGATGAGTCTGGCCAGGTGAT AGGTGGTGGCTCATGGAGATCTTCAGATGAACAGCAGTATCATCATCTGCAAATGCAAGGTGGTGGTGACGGGGGACAAGCGTACAACCTTGGCCATCTTTCCTTGCCTGCAGCTCTTCATCATCGCCACATCACTGCTGGCTCCGGTACCATCTTGCAGTCCAGGGTTGCCAATGCATGGTCCCCATGGAGATGCCATGGATCATACTGGCTCCGTGCAGGCCATCACCTGCTTGTTGGATCAAAACCCTATTACCCACCACCACCAGCTGAAGCTAGAGCTAATACCAGCAGCAACCATCCAGATTTTGTCCAAGGCTCTTCTTCATCTCCAGATGATCATACCATGAACCATCAAAGACCAGTAGTGCTGAAAGAGATGAT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        ]
[-] EMBL CA761211             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                               CCCTATTACAC CCACCACCAGCTGAAGCTAGAGCTAATACCAGCAGCAACCATCCAGATTTTGTCCAAGGCTCTTCTTCATCTCCAGATGATCATACCATGAACCATCAAGGACCAGTAATGCTGAAAGAGATGATCTACAATGAGGGTAGTAACCATCAAGGAGGTCCTCTTAATCTCGATCTCTCACTCGATATCTGTCCACGGGGCGAGAAGAGGAAGAGAGAAT   TCAGCTGGAGGAAACATGAGGAAGATCATGATCATACTACTATTGCTATTGGTGGTGATCAAGAAGCAGAGAGTTGTGCTACTGGGCTCTCTCTTTCTTTGTTCTGATCATGTCTCCCCTGTTGAAAGATGCATCATTAGAGTCCTACCACTACTATATTGCTGTGCTGTACTGGTCTGGTCCCTGGTGATATATCAGATATCCCTAGCTAGATCATATGTCATTGTGGATGATAAATCAAATTAGGAAAGAAGAAAACTCATGCAACAGGGACAAGTACTCTTCATCTCACCATATGACTACACTGTGGTGATATTTTGTGGTACTTGTCCTTTTACGCATGTATCTAGAGGAAGATAAACATAAATTTATTGTATTTCTGTTGCACATTATCTTTCGTATCTTTTGATTAATATAGCTGATCCCGGTTGATCTAAAAAAAAAAAAAAAA                      ]
[+] EMBL AU029658             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                       GCTGTGCTGTACTGGTCTGGCCCCTGGTGATATATCAGATATCACTAGCTAGNTCATATGTCATTGTGGATGATAAATCAAATTAGGAAAGAAGAAAACTCATGCAACAGGGACAAGTACTCTTCATCTCACCATATGACTACACTGTGGTGATATTTTGTGGTACTTGTCCTTTTACGCATGTATCTAGAGGAAGATAAACATAAATTTATTGTATTTCTGTTGCACATTATCTTTCGTATCTTTTGATTAATATAGCTGATCCCGGTTGNTCTAAAAAAAAAAAAAAAAAAANNAAAAAAAAAAAAAAAAA]


>consensus_10442#0 CAGCTTCAGCTTTTGGCTTCTCCTATAGCCTCTTTTGACATCATATCAGTGCAGTGGCCG GCGGCGATATCATGCAGCAGCAGCAACGAGACTAGAGCTCTCTTCATCATCATATCGTCA AGCTGCCATAGATCGATCAGAGCTGGCTGCTGGCCGGCCGGTGATCCTTCCTATAATTTC CTAGCTTGTGTCATGGAAAAAACTAGTGCAGGCAAGGAGGAGGGCTCCGAGAGTAAGACG GCGGCGGCCAACAACGATGGGAGCTCGACGAGCAGTACTACGGAGGAGGAGGAATCCGGG GAGAGCCAGCGGCGCACGTCGTCGTCGTCGTCGGTGCGCCCCTACATCCGCTCCAAGAAC CCTCGCCTCCGCTGGACGCCGGAGCTCCATCTCTCCTTCGTCCGCGCCGTCGACAGGCTC GGCGGCCAAGATCGTGCAACTCCTAAGCTCGTTCTTCAGTTGATGAATGTTAGAGGGCTT AGCATAGGCCATGTCAAGAGCCATCTCCAGATGTATAGAAGCAAGAAGATCGATGAGTCT GGCCAGGTGATAGGTGGTGGCTCATGGAGATCTTCAGATGAACAGCAGTATCATCATCTG CAAATGCAAGGTGGTGGTGACGGGGGACAAGCGTACAACCTTGGCCATCTTTCCTTGCCT GCAGCTCTTCATCATCGCCACATCACTGCTGGCTCCGGTACCATCTTGCAGTCCAGGGTT GCCAATGCATGGTCCCCATGGAGATGCCATGGATCATACTGGCTCCGTGCAGGCCATCAC CTGCTTGTTGGATCAAAACCCTATTACCCACCACCACCAGCTGAAGCTAGAGCTAATACC AGCAGCAACCATCCAGATTTTGTCCAAGGCTCTTCTTCATCTCCAGATGATCATACCATG AACCATCAAAGACCAGTAGTGCTGAAAGAGATGATCTACAATGAGGGTAGTAACCATCAA GGAGGTCCTCTTAATCTCGATCTCTCACTCGATATCTGTCCGCGGGGCGAGAAGAGGAAG AGAGAATTGATCAGCTGGAGGAAATATGAGGAAGATCATGATCATACTACTATTGCTATT GGTGGTGATCAAGAAGCAGAGAGTTGTGCTACTGGGCTCTCTCTTTCTTTGTTCTGATCA TGTCTCCCCTGTTGAAAGATGCATCATCAGAGTCCTACCACTACTATATTGCTGTGCTGT ACTGGTCTGGTCCCTGGTGATATATCAGATATCACTAGCTAGATCATATGTCATTGTGGA TGATAAATCAAATTAGGAAAGAAGAAAACTCATGCAACAGGGACAAGTACTCTTCATCTC ACCATATGACTACACTGTGGTGATATTTTGTGGTACTTGTCCTTTTACGCATGTATCTAG AGGAAGATAAACATAAATTTATTGTATTTCTGTTGCACATTATCTTTCGTATCTTTTGAT TAATATAGCTGATCCCGGTTGATCTAAAAAAAAAAAAAAAAAAANNAAAAAAAAAAAAAA AAA



consensusID : consensus_10442#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 782
fasta sequence
                              [TGGAAGATTGTCTGTCCCTGGATCTTAATTAGATATTTACCTGCTTCTCCTCCTCATGCATGAATCCACCTGCTGCCTTTAATTACCTAGCTAGCTACCTTAATTACTAGTACTAGAGTAGCTTGTTAGTAGTTACTTGTATATGAGCATGCATGCTTAGCTCAATCCCTTCCAAAAAGGCAGCAATATATATGCATCTGGACATATATATGGGGTGTAGCTAGGTAGATAGATAGAATTGAATGGTGACCTCAGCTCCAGCTTCAGCTTTTGGCTTCTCCTATAGCCTCTTTTGACATCATATCATTGGCCGGCGATATCATGCAGATGCAGCCGCATCAGCAGCAACAAGACGACTCGTGTTCATCATCAAGCTAAGCTTGCTAAAGCTATAGAGAGTTGTCCGGCCGGTGATCCTTCCTTAATTTCCCTATCTAGCTTTGTCTCGATCGCTATATATGGGAAGTGCAGGCAAGGAGGAGGAGGAGGAGGACGGCGGCGGCGGTGCACCGGCGGCGGCGGCCAACAACTACGGGAGCTCGACGACGAGCAGTACTACGGAGGAGGAGGGATCCGGGGAGAGCAGGCGGCGCACGTCGTCGTCGTCGTCGGTGCGCCCCTACGTCCGCTCCAAGAACCCTCGCCTCCGTTGGACGCCGGAGCTCCACCTCTCCTTCGTCCGCGCCGTCGACAGGCTCGGTGGCCAAGATCGCGCAACTCCTAAGCTCGTTCTTCAGCTGATGAATGTTAGAGGGCTTAGCATANGCCATGTCAAGAGCCAT]

[+] EMBL CB670393             [TGGAAGATTGTCTGTCCCTGGATCTTAATTAGATATTTACCTGCTTCTCCTCCTCATGCATGAATCCACCTGCTGCCTTTAATTACCTAGCTAGCTACCTTAATTACTAGTACTAGAGTAGCTTGTTAGTAGTTACTTGTATATGAGCATGCATGCTTAGCTCAATCCCTTCCAAAAAGGCAGCAATATATATGCATCTGGACATATATATGGGGTGTAGCTAGGTAGATAGATAGAATTGAATGGTGACCTCAGCTCCAGCTTCAGCTTTTGGCTTCTCCTATAGCCTCTTTTGACATCATATCATTGGCCGGCGATATCATGCAGATGCAGCCGCATCAGCAGCAACAAGACGACTCGTGTTCATCATCAAGCTAAGCTTGCTAAAGCTATAGAGAGTTGTCCGGCCGGTGATCCTTCCTTAATTTCCCTATCTAGCTTTGTCTCGATCGCTATATATGGGAAGTGCAGGCAAGGAGGAGGAGGAGGAGGACGGCGGCGGCGGTGCACCGGCGGCGGCGGCCAACAACTACGGGAGCTCGACGACGAGCAGTACTACGGAGGAGGAGGGATCCGGGGAGAGCAGGCGGCGCACGTCGTCGTCGTCGTCGGTGCGCCCCTACGTCCGCTCCAAGAACCCTCGCCTCCGTTGGACGCCGGAGCTCCACCTCTCCTTCGTCCGCGCCGTCGACAGGCTCGGTGGCCAAGATCGCGCAACTCCTAAGCTCGTTCTTCAGCTGATGAATGTTAGAGGGCTTAGCATANGCCATGTCAAGAGCCAT]


>consensus_10442#1 TGGAAGATTGTCTGTCCCTGGATCTTAATTAGATATTTACCTGCTTCTCCTCCTCATGCA TGAATCCACCTGCTGCCTTTAATTACCTAGCTAGCTACCTTAATTACTAGTACTAGAGTA GCTTGTTAGTAGTTACTTGTATATGAGCATGCATGCTTAGCTCAATCCCTTCCAAAAAGG CAGCAATATATATGCATCTGGACATATATATGGGGTGTAGCTAGGTAGATAGATAGAATT GAATGGTGACCTCAGCTCCAGCTTCAGCTTTTGGCTTCTCCTATAGCCTCTTTTGACATC ATATCATTGGCCGGCGATATCATGCAGATGCAGCCGCATCAGCAGCAACAAGACGACTCG TGTTCATCATCAAGCTAAGCTTGCTAAAGCTATAGAGAGTTGTCCGGCCGGTGATCCTTC CTTAATTTCCCTATCTAGCTTTGTCTCGATCGCTATATATGGGAAGTGCAGGCAAGGAGG AGGAGGAGGAGGACGGCGGCGGCGGTGCACCGGCGGCGGCGGCCAACAACTACGGGAGCT CGACGACGAGCAGTACTACGGAGGAGGAGGGATCCGGGGAGAGCAGGCGGCGCACGTCGT CGTCGTCGTCGGTGCGCCCCTACGTCCGCTCCAAGAACCCTCGCCTCCGTTGGACGCCGG AGCTCCACCTCTCCTTCGTCCGCGCCGTCGACAGGCTCGGTGGCCAAGATCGCGCAACTC CTAAGCTCGTTCTTCAGCTGATGAATGTTAGAGGGCTTAGCATANGCCATGTCAAGAGCC AT



consensusID : consensus_10442#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 762
fasta sequence
                              [GCTCTCCATCATCGCTATATCACTGCTGGCTCCGGTACCATCTTCCAGTCCAGGTTTGGCAATTCATGGTCCCCATGGAGATGTCATGGATCATACTGGCTCCCTGCAGGCCATCACCTGCTTGTTGGATCAAAACCCTATTACCCACCAGCAGCTGAAGCTGAAGCTCCTTTCCGCAGATCAAGTGCTAGGTATGTAGCTAGAGCTAATACCAGCAACCATCCAGATTTTGTCCAAGGCTCTTCTTCATCTCCAGATGATAATATCATGAACCATCAAAGACCAGTTCTGAAAGAGATGATCTGCAGTGAGGGTAGTAACCATCAAGAAGGCCCTCTTAATCTGGATCTCTCACTCGATATCTGTCCGCGGGGCGAGAAGAGGAAGAGAGAATGCAGCTGGAGGAAACAAGAGGAAGATCATGATCATGCTACTGTTGCTATTGGTGCTGATCAAGAAGCAGAGAGTTGTGCTACTGGGCTCTCTCTTTCTTTGTTCTGATCATGTCTCCCCTGTTGAAAGATGCACCATCACTAGTCCTACCAGTACTATATTGCTGTACTGGCCTGGTGATATATCACTAGCTAGCTATAGTAGCTAGATATCATATGTTATTGTGGATGATAAATCAAATTAGGGAAGAAAACTCATGCAGCAGGGACAAGTACTCTTCATCTCACCATATGACTACACTGTGGTGATATTTTGTGGTACTTGTCCTTTTATGCATGTATCTAGAGGAAGATAAATATTTATTATGCA]

[-] EMBL CB670394             [GCTCTCCATCATCGCTATATCACTGCTGGCTCCGGTACCATCTTCCAGTCCAGGTTTGGCAATTCATGGTCCCCATGGAGATGTCATGGATCATACTGGCTCCCTGCAGGCCATCACCTGCTTGTTGGATCAAAACCCTATTACCCACCAGCAGCTGAAGCTGAAGCTCCTTTCCGCAGATCAAGTGCTAGGTATGTAGCTAGAGCTAATACCAGCAACCATCCAGATTTTGTCCAAGGCTCTTCTTCATCTCCAGATGATAATATCATGAACCATCAAAGACCAGTTCTGAAAGAGATGATCTGCAGTGAGGGTAGTAACCATCAAGAAGGCCCTCTTAATCTGGATCTCTCACTCGATATCTGTCCGCGGGGCGAGAAGAGGAAGAGAGAATGCAGCTGGAGGAAACAAGAGGAAGATCATGATCATGCTACTGTTGCTATTGGTGCTGATCAAGAAGCAGAGAGTTGTGCTACTGGGCTCTCTCTTTCTTTGTTCTGATCATGTCTCCCCTGTTGAAAGATGCACCATCACTAGTCCTACCAGTACTATATTGCTGTACTGGCCTGGTGATATATCACTAGCTAGCTATAGTAGCTAGATATCATATGTTATTGTGGATGATAAATCAAATTAGGGAAGAAAACTCATGCAGCAGGGACAAGTACTCTTCATCTCACCATATGACTACACTGTGGTGATATTTTGTGGTACTTGTCCTTTTATGCATGTATCTAGAGGAAGATAAATATTTATTATGCA]


>consensus_10442#2 GCTCTCCATCATCGCTATATCACTGCTGGCTCCGGTACCATCTTCCAGTCCAGGTTTGGC AATTCATGGTCCCCATGGAGATGTCATGGATCATACTGGCTCCCTGCAGGCCATCACCTG CTTGTTGGATCAAAACCCTATTACCCACCAGCAGCTGAAGCTGAAGCTCCTTTCCGCAGA TCAAGTGCTAGGTATGTAGCTAGAGCTAATACCAGCAACCATCCAGATTTTGTCCAAGGC TCTTCTTCATCTCCAGATGATAATATCATGAACCATCAAAGACCAGTTCTGAAAGAGATG ATCTGCAGTGAGGGTAGTAACCATCAAGAAGGCCCTCTTAATCTGGATCTCTCACTCGAT ATCTGTCCGCGGGGCGAGAAGAGGAAGAGAGAATGCAGCTGGAGGAAACAAGAGGAAGAT CATGATCATGCTACTGTTGCTATTGGTGCTGATCAAGAAGCAGAGAGTTGTGCTACTGGG CTCTCTCTTTCTTTGTTCTGATCATGTCTCCCCTGTTGAAAGATGCACCATCACTAGTCC TACCAGTACTATATTGCTGTACTGGCCTGGTGATATATCACTAGCTAGCTATAGTAGCTA GATATCATATGTTATTGTGGATGATAAATCAAATTAGGGAAGAAAACTCATGCAGCAGGG ACAAGTACTCTTCATCTCACCATATGACTACACTGTGGTGATATTTTGTGGTACTTGTCC TTTTATGCATGTATCTAGAGGAAGATAAATATTTATTATGCA



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_10442#0      CAGCTTCAGCTTTTGGCTTCTCCTATAGCCTCTTTTGACATCATATCAGTGCAGTGGCCG 60
consensus_10442#2      ------------------------------------------------------------
consensus_10442#1      ------------------------------------------------------------
                                                                                   

consensus_10442#0      GCGGCGATATCATGCAGCAGCAGCAACGAGACTAGAGCTCTCTTCATCATCATATCGTCA 120
consensus_10442#2      ------------------------------------------------------------
consensus_10442#1      ------------------------------------------------------------
                                                                                   

consensus_10442#0      AGCTGCCATAGATCGATCAGAGCTGGCTGCTGGCCGGCCGGTGATCCTTCCTATAATTTC 180
consensus_10442#2      ------------------------------------------------------------
consensus_10442#1      ------------------------------------------------------------
                                                                                   

consensus_10442#0      CTAGCTTGTGTCATGGAAAAAACTAGTGCAGGCAAGGAGGAGGGCTCCGAGAGTAAGACG 240
consensus_10442#2      ------------------------------------------------------------
consensus_10442#1      ------------------------------------------------------------
                                                                                   

consensus_10442#0      GCGGCGGCCAACAACGATGGGAGCTCGACGAGCAGTACTACGGAGGAGGAGGAATCCGGG 300
consensus_10442#2      ------------------------------------------------------------
consensus_10442#1      ------------------------------------------------------------
                                                                                   

consensus_10442#0      GAGAGCCAGCGGCGCACGTCGTCGTCGTCGTCGGTGCGCCCCTACATCCGCTCCAAGAAC 360
consensus_10442#2      ------------------------------------------------------------
consensus_10442#1      ------------------------------------------------------------
                                                                                   

consensus_10442#0      CCTCGCCTCCGCTGGACGCCGGAGCTCCATCTCTCCTTCGTCCGCGCCGTCGACAGGCTC 420
consensus_10442#2      ------------------------------------------------------------
consensus_10442#1      ------------------------------------------------------------
                                                                                   

consensus_10442#0      GGCGGCCAAGATCGTGCAACTCCTAAGCTCGTTCTTCAGTTGATGAATGTTAGAGGGCTT 480
consensus_10442#2      ------------------------------------------------------------
consensus_10442#1      ------------------------------------------------------------
                                                                                   

consensus_10442#0      AGCATAGGCCATGTCAAGAGCCATCTCCAGATGTATAGAAGCAAGAAGATCGATGAGTCT 540
consensus_10442#2      ------------------------------------------------------------
consensus_10442#1      ------------------------------------------------------------
                                                                                   

consensus_10442#0      GGCCAGGTGATAGGTGGTGGCTCATGGAGATCTTCAGATGAACAGCAGTATCATCATCTG 600
consensus_10442#2      ------------------------------------------------------------
consensus_10442#1      ------------------------------------------------------------
                                                                                   

consensus_10442#0      CAAATGCAAGGTGGTGGTGACGGGGGACAAGCGTACAACCTTGGCCATCTTTCCTTGCCT 660
consensus_10442#2      ------------------------------------------------------------
consensus_10442#1      -------------------------------------------------TGGAAGATTGT 11
                                                                                   

consensus_10442#0      GCAGCTCTTCATCATCGCCACATCACTGCTGGCTCCGGTACC--ATCTTGCAGTCCAGGG 718
consensus_10442#2      ---GCTCTCCATCATCGCTATATCACTGCTGGCTCCGGTACC--ATCTTCCAGTCCAGGT 55
consensus_10442#1      CTGTCCCTGGATCTTAATTAGATATTTACCTGCTTCTCCTCCTCATGCATGAATCCACCT 71
                           * **  *** *    * **   * *  *** *    **  **     * ****   

consensus_10442#0      TTGCCAATGCATGGTCCCCATGGAGATGCCATGGATCA-TACTGGCTC--CGTGCAGGCC 775
consensus_10442#2      TTGGCAATTCATGGTCCCCATGGAGATGTCATGGATCA-TACTGGCTC--CCTGCAGGCC 112
consensus_10442#1      GCTGCCTTTAATTACCTAGCTAGCTACCTTAATTACTAGTACTAGAGTAGCTTGTTAGTA 131
                           *  *  **   *    * *  *    *   *  * **** *     * **   *  

consensus_10442#0      ATCACCTGCTTGTTGGATCAAAACCCTATTACCCACCACCACC---AGCTGAAGCT---- 828
consensus_10442#2      ATCACCTGCTTGTTGGATCAAAACCCTATTACCCACCAGCAGCTGAAGCTGAAGCTCCTT 172
consensus_10442#1      GTTACTTGTATATGAGCATGCATGCTTA--GCTCAATCCCTTCCAAAAAGGCAGCA---- 185
                        * ** **  * *  *     *  * **   * **    *  *   *   * ***     

consensus_10442#0      -----AGAGCTAATACCAG---------------------CAGCAACCATCCAGATTTTG 862
consensus_10442#2      TCCGCAGATCAAGTGCTAGGTATGTAGCTAGAGCTAATACCAGCAACCATCCAGATTTTG 232
consensus_10442#1      ---ATATATATGCATCTGGACATATATATGGGGTGTAGCTAGGTAGATAGATAGAATTGA 242
                            * *       *  *                       * *   *   *** **  

consensus_10442#0      TCCAAGGC-TCTTCTTCATCTCCAGATGATCA--TACCATGAACCATCAAAGACCAGTAG 919
consensus_10442#2      TCCAAGGC-TCTTCTTCATCTCCAGATGATAA--TATCATGAACCATCAAAGACCAGTT- 288
consensus_10442#1      ATGGTGACCTCAGCTCCAGCTTCAGCTTTTGGCTTCTCCTATAGCCTCTTTTGACATCAT 302
                            * * **  ** ** ** *** *  *    *  * *  * * **      **    

consensus_10442#0      TGCTGAAAGAGATGATCTACAATGAGGGTAGTAACCATCAAGGAGGTCCTCTTAATCTCG 979
consensus_10442#2      --CTGAAAGAGATGATCTGCAGTGAGGGTAGTAACCATCAAGAAGGCCCTCTTAATCTGG 346
consensus_10442#1      ATCATTGGCCGGCGATATCATGCAGATGCAGCCGC-ATCAGCAGCAACAAGACGACTCGT 361
                         *       *  *** *         * **   * ****       *      *     

consensus_10442#0      ATCTCTCACTCGATATCTGTCCGCGGGGCGAGAAGAGGAAGAGAGAATTGATCAGCTGGA 1039
consensus_10442#2      ATCTCTCACTCGATATCTGTCCGCGGGGCGAGAAGAGGAAGAGAGAAT---GCAGCTGGA 403
consensus_10442#1      GTTCATCA-TCAAGCTAAGCTTGCT--------AAAGCTATAGAGAGTTGTCCGGCCGGT 412
                        *   *** ** *  *  *   **         * **  * ***** *    * ** ** 

consensus_10442#0      GGAAATATGAGGAAGATCATGATCATACTACTATTGCTATTGGTGGTGATCAAGAA---- 1095
consensus_10442#2      GGAAACAAGAGGAAGATCATGATCATGCTACTGTTGCTATTGGTGCTGATCAAGAA---- 459
consensus_10442#1      G-ATCCTTCCTTAATTTCCCTATCTAGCT-TTGTCTCGATCGCTATATATGGGAAGTGCA 470
                       * *         **  **   ***   **  * *  * ** * *    **    *     

consensus_10442#0      -GCAGAGAGTTGTGCTACTGGGCTCTCTCTTTCTTTGTTCTGATCATGTCTCCCC-TGTT 1153
consensus_10442#2      -GCAGAGAGTTGTGCTACTGGGCTCTCTCTTTCTTTGTTCTGATCATGTCTCCCC-TGTT 517
consensus_10442#1      GGCAAGGAGGAGGAGGAGGAGGACGGCGGCGGCGGTGCACCGGCGGCGGCGGCCAACAAC 530
                        ***  ***  *    *   **    *     *  **  * *     * *  **      

consensus_10442#0      GAAAGATGCATCATCAG-AGTCCTACCACTACTATATTGCTGTGCTGTACTGGTCTGGTC 1212
consensus_10442#2      GAAAGATGCACCATCACTAGTCCTACCAGTACTATATTGC-----TGTACTGGCCTGGTG 572
consensus_10442#1      TACGGGAGCTCGACGACGAGCAGTACTACGGAGGAGGAGGGAT-CCGGGGAGAGCAGGCG 589
                        *  *  **   *  *  **   *** *          *       *    *  * **  

consensus_10442#0      CCTGGTGATATATCAGATATCACTAGCTAGAT--CATATGTCATTGTGGATGATAAATCA 1270
consensus_10442#2      ATATATCACTAGCTAGCTAT-AGTAGCTAGATATCATATGTTATTGTGGATGATAAATCA 631
consensus_10442#1      GCGCACGTCGTCGTCGTCGTCGGTGCGCCCCTA-CGTCCGCT-CCAAGAACCCTCGCCTC 647
                                      *   *   *       *  * *  *       * *   *      

consensus_10442#0      AATTAGGAAAGAAGAAAACTCATGCAACAGGGACAAGTACTCTTCATCTCACCATATGAC 1330
consensus_10442#2      AATTAGG---GAAGAAAACTCATGCAGCAGGGACAAGTACTCTTCATCTCACCATATGAC 688
consensus_10442#1      CGTTGGAC--GCCGGAGCTCCACCTCTCCTTCGTCCGCGC-CGTCGACAGGCTCGGTGGC 704
                         ** *    *  * *    **     *        *  * * **  *   *    ** *

consensus_10442#0      TACACTGTGGTGATATTTTGTGGTACTTGTCCTTTTACGCATGTATCTAGAGGAAGATAA 1390
consensus_10442#2      TACACTGTGGTGATATTTTGTGGTACTTGTCCTTTTATGCATGTATCTAGAGGAAGATAA 748
consensus_10442#1      CAAGATCGCGCAACTCCTAAGCTCGTTCTTCAGCTGATGAATGT-TAGAGGGCTTAGCAT 763
                        *   *   *  *    *        *  **   * * * **** *  ** *      * 

consensus_10442#0      ACATAAATTTATTGTATTTCTGTTGCACATTATCTTTCGTATCTTTTGATTAATATAGCT 1450
consensus_10442#2      ATA----TTTATTATGCA------------------------------------------ 762
consensus_10442#1      ANGCCATGTCAAGAGCCAT----------------------------------------- 782
                       *       * *                                                 

consensus_10442#0      GATCCCGGTTGATCTAAAAAAAAAAAAAAAAAAANNAAAAAAAAAAAAAAAAA 1503
consensus_10442#2      -----------------------------------------------------
consensus_10442#1      -----------------------------------------------------
                                                                            




Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)