These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_10449#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 6 consensus length = 1192 fasta sequence [GCTCAGTGGAGGGAGAAGACCATCACCACCATGGGCGCCAGCCTG-AGCCTCGTGCCGCTCCTCGACTACTTCGCGCGCCGGGAGTTCGCCGCCGCCGGCCTCAGCCCCGGCGCCGTCACGCTGCCGTACCCGGGCGACGGCGGCGAGGCGACCTGCACCGTCCACTACTGGGCCTCCACGGGGGAGCCGCTGCTGCCGCCGCTGCTGCTCGTGCATGGGTTCGGCCCACGGGCCACCTGGCAGTGGCGCTGCCAGGTGGGCCCACTGTCCCGGCATTTCCACCTCATCGTGCCCGACCTCATCGGCTTCGGCGGCAGCTCGTTC-GGCGGCGACTCCGCCGCCTCGCCGCCGTCGGAGGCTACGCAGGCGGCGGCGCTGGCGGCGCTGCTGGACGCGCTGCCGGGGATGAAGGGGAGGCGGGTGGCGGTGGCGGGGACCAGCTACGGCGGGTTCGTGGCGTACTGGCTGGCGCGCACGGCGGGGGCCGGGAGGGTTGGCCCCGTGGTGATCGCGAGCTCCGACCTGCTCAAGACGGCGGCGGACGACCGGGGGTTCCTGAAGAGGGCCGGCGACGGGTGGAGCGGCGTGGAGGAGGTGCTCCTGCCGGCCGAGCCCGCCGCGATGCGGAAGCTGCTGGAGATGGCCTCGTGCCGGCCGCCGCCGCCGGTGCTGATGCCGGACTTCATCCTCCGCGACTTCATCCAGAAACTTTTCACGGAGAACAGAGAGCAACTTATTCAACTCTTCAAGGGGATCACAGTTGGCACAGACAAGTTCCCAGTAACTCCAATATCTCAGGAAGTGTTGATTGTCTGGGGAGAGCAAGATCAGTTGTTCCCGGTTGAGAAGGCTTATGCAGTTCAGAGTTCTTTGGATGGGAAAGCTAGAGTGGAAATCATAAGCAAAACAGGCCATGCTCCACAGCTGGAGGATCCAACCCGGTTCAACAAGATCCTGCTAGACTTCTTGCTGGCTACTCACAAGCCTGATCCTTCGTCAAATGGCGCATCGCAATAAGTCGGATGCCCACTCGAATATTTGATTGATTGAAATAAGATGGTTAGCCACCTTCGTCCATTCATAGCTAAAATTTGTACTACGAATTATTTGAGAACGCACATTGAGAAATAATTAAAGAAAATGGGTGGATTGTTGATTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA] [+] EMBL AK108257 [GCTCAGTGGAGGGAGAAGACCATCACCACCATGGGCGCCAGCCTG AGCCTCGTGCCGCTCCTCGACTACTTCGCGCGCCGGGAGTTCGCCGCCGCCGGCCTCAGCCCCGGCGCCGTCACGCTGCCGTACCCGGGCGACGGCGGCGAGGCGACCTGCACCGTCCACTACTGGGCCTCCACGGGGGAGCCGCTGCTGCCGCCGCTGCTGCTCGTGCATGGGTTCGGCCCACGGGCCACCTGGCAGTGGCGCTGCCAGGTGGGCCCACTGTCCCGGCATTTCCACCTCATCGTGCCCGACCTCATCGGCTTCGGCGGCAGCTCGTTC GGCGGCGACTCCGCCGCCTCGCCGCCGTCGGAGGCTACGCAGGCGGCGGCGCTGGCGGCGCTGCTGGACGCGCTGCCGGGGATGAAGGGGAGGCGGGTGGCGGTGGCGGGGACCAGCTACGGCGGGTTCGTGGCGTACTGGCTGGCGCGCACGGCGGGGGCCGGGAGGGTTGGCCCCGTGGTGATCGCGAGCTCCGACCTGCTCAAGACGGCGGCGGACGACCGGGGGTTCCTGAAGAGGGCCGGCGACGGGTGGAGCGGCGTGGAGGAGGTGCTCCTGCCGGCCGAGCCCGCCGCGATGCGGAAGCTGCTGGAGATGGCCTCGTGCCGGCCGCCGCCGCCGGTGCTGATGCCGGACTTCATCCTCCGCGACTTCATCCAGAAACTTTTCACGGAGAACAGAGAGCAACTTATTCAACTCTTCAAGGGGATCACAGTTGGCACAGACAAGTTCCCAGTAACTCCAATATCTCAGGAAGTGTTGATTGTCTGGGGAGAGCAAGATCAGTTGTTCCCGGTTGAGAAGGCTTATGCAGTTCAGAGTTCTTTGGATGGGAAAGCTAGAGTGGAAATCATAAGCAAAACAGGCCATGCTCCACAGCTGGAGGATCCAACCCGGTTCAACAAGATCCTGCTAGACTTCTTGCTGGCTACTCACAAGCCTGATCCTTCGTCAAATGGCGCATCGCAATAAGTCGGATGCCCACTCGAATATTTGATTGATTGAAATAAGATGGTTAGCCACCTTCGTCCATTCATAGCTAAAATTTGTACTACGAATTATTTGAGAACGCACATTGAGAAATAATTAAAGAAAATGGGTGGATTGTT ] [+] EMBL AU184607 [ CAGTGGAGGGAGAAGACCATCACCACCATGGGCGCCAGCCTG AGCCTCGTGCCGCTCCTCGACTACTTCGCGCGCCGGGAGTTCGCCGCCGCCGGCCTCAGCCCCGGCGCCGTCACGCTGCCGTACCCGGGCGACGGCGGCGAGGCGACCTGCACCGTCCACTACTGGGCCTCCACGGGGGAGCCGCTGCTGCCGCCGCTGCTGCTCGTGCATGGGTTCGGCCCACGGGCCACCTGGCAGTGGCGCTGCCAGGTGGGCCCACTGTCCNGGCATTTACACCTCATCATGCCCGA ] [+] EMBL AU032296 [ AGTGGAGGGAGAAGACCATCACCACCATGGGCGCCA CTGNAGCCTCGTGCCGCTCCTCGACTACTTCGCGCGCCGGGAGTTCGCCGCCGCCGGCCTCAGCCCCGGCGCCGTCACGCTGCCGTACCCGGGCGACGGCGGCGAGGCGACCTGCACCGTCCACTACTGGGCCTCCACGGGGGAGCCGCTGCTGCCGCCGCTGCTGCTCGTGCATGGGTTCGGCCCACGGGCCACCTGGCAGTGGCGCTGCCAGGTGGGCCCACTGTCCCGGCATTTCCACCTCATCGTGCCCGANCTCATCGGCTTCGGCGGCAGCTCGTTCGGGCGGCGACTCCGCCGCTTCGCCG ] [+] EMBL C71766 [ GGGAGAAGACCATCACCACCATGGGCGCCAG NTGNAGCCTCGTGCCGCTCCTCGACTACTTCGCGCGCCGGGAGTTCGCCGCCGCCGGCCTCAGCCCCGGCGCCGTCACGCTGCCGTACCCGGGCAACGGCGGCGAGGCGACCTGCACCGTCCACTACTGGGCCTCCACGGGGNAGCCGCTGCT ] [+] EMBL C73718 [ ACGGGTGGAGCGGCGTGGAGGAGGTGCTCCTGCCGGCCGAGCCCGCCGCGATGCGGAAGCTGCTGGAGATGGCCTCGTGCCGGCCGCCGCCGCCGGTGCTGATGCCGGACTTCATCCTCCGCGACTTCATCCAGAAACTTTTCACGGAGAACAGAGAGCAACTTATTCAACTCTTCAAGGGGATCACAGTTGGCACAGACAAGTTCCCAGTAACTCCAATATCTCAGGAAGTGTTGATTGTCTGGGGAGAGCAAGATCAGTTGTTCCCGGTTGAGAA GNTTATGCAGTTCAGAGTTCTTTGGATGGG AAGTTAGAGTGGAAATCATAAGCAAAACAGGCatt ] [+] EMBL AU172743 [ GACAAGTTCCCAGTAACTCCAATATCTCAGGAAGTGTTGATTGTNTGGGGANAGCAAGATCAGTTGTTCCCGGTTGANAAGGCTTATGCAGTTCANAGTTCTTTGGATGGGAAAGCTAGAGTGGAAATCATAAGCAAAACAGGCCATGCTCCNCAGCTGGAGGATCCAACCCGGTTCAACAAGATCCTGCTAGACTTCTTGCTGGCTACTCNCAAGCCTGATCCTTCGTCAAATGGCGCATCGCAATAAGTCGGATGCCCNCTCGAATATTTGATTGATTGAAATAANATGGTTAGCCNCCTTCGTCCATTCATAGCTAAAATTTGTACTACGAATTATTTGAGAACGCCCATTGAGAAATAATTAAANAAAATGGGTGGATTGTTGATTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA] consensusID : consensus_10449#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 447 fasta sequence [CACTTATTCGACTCTTCAAGGGGATCACAGTTGGCACAGACAAGTTCCCAGTAACTCCCATATGTCAGGAAGTGTTGATTGTCTGGGGAGACAAGATCAGTTGTTCCCGGTTGAGAAGGCTTATCACGTTCAGAGGTAATGGATAGTAACATACTAGTACGAAGCTTCCATTTCAGTATTTAACTGAACACGGATTGACGTTTCCTGCACCAAATTCGCTCTGTCCAGTTCTTTGGATGGGAAAGCTAGAGTGGAAATCATAAGTAAAACACGGCCATGCTCCACAGCTGGAGGATCCCACCCGGTTCAACAGATCCTGCTAGACTTCTTGCTGGCTACTCACAAGCCTGATCCTTCGTCAAATGGCGCATCGCAATAAGTCGGATGCCACTCGAATATTTGATTGATTGAAATAAGATGGTTAGCCACCTTCGTCCAAAAAAAAAA] [+] EMBL BI805079 [CACTTATTCGACTCTTCAAGGGGATCACAGTTGGCACAGACAAGTTCCCAGTAACTCCCATATGTCAGGAAGTGTTGATTGTCTGGGGAGACAAGATCAGTTGTTCCCGGTTGAGAAGGCTTATCACGTTCAGAGGTAATGGATAGTAACATACTAGTACGAAGCTTCCATTTCAGTATTTAACTGAACACGGATTGACGTTTCCTGCACCAAATTCGCTCTGTCCAGTTCTTTGGATGGGAAAGCTAGAGTGGAAATCATAAGTAAAACACGGCCATGCTCCACAGCTGGAGGATCCCACCCGGTTCAACAGATCCTGCTAGACTTCTTGCTGGCTACTCACAAGCCTGATCCTTCGTCAAATGGCGCATCGCAATAAGTCGGATGCCACTCGAATATTTGATTGATTGAAATAAGATGGTTAGCCACCTTCGTCCAAAAAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_10449#0 GCTCAGTGGAGGGAGAAGACCATCACCACCATGGGCGCCAGCCTGAGCCTCGTGCCGCTC 60 consensus_10449#1 ------------------------------------------------------------ consensus_10449#0 CTCGACTACTTCGCGCGCCGGGAGTTCGCCGCCGCCGGCCTCAGCCCCGGCGCCGTCACG 120 consensus_10449#1 ------------------------------------------------------------ consensus_10449#0 CTGCCGTACCCGGGCGACGGCGGCGAGGCGACCTGCACCGTCCACTACTGGGCCTCCACG 180 consensus_10449#1 ------------------------------------------------------------ consensus_10449#0 GGGGAGCCGCTGCTGCCGCCGCTGCTGCTCGTGCATGGGTTCGGCCCACGGGCCACCTGG 240 consensus_10449#1 ------------------------------------------------------------ consensus_10449#0 CAGTGGCGCTGCCAGGTGGGCCCACTGTCCCGGCATTTCCACCTCATCGTGCCCGACCTC 300 consensus_10449#1 ------------------------------------------------------------ consensus_10449#0 ATCGGCTTCGGCGGCAGCTCGTTCGGCGGCGACTCCGCCGCCTCGCCGCCGTCGGAGGCT 360 consensus_10449#1 ------------------------------------------------------------ consensus_10449#0 ACGCAGGCGGCGGCGCTGGCGGCGCTGCTGGACGCGCTGCCGGGGATGAAGGGGAGGCGG 420 consensus_10449#1 ------------------------------------------------------------ consensus_10449#0 GTGGCGGTGGCGGGGACCAGCTACGGCGGGTTCGTGGCGTACTGGCTGGCGCGCACGGCG 480 consensus_10449#1 ------------------------------------------------------------ consensus_10449#0 GGGGCCGGGAGGGTTGGCCCCGTGGTGATCGCGAGCTCCGACCTGCTCAAGACGGCGGCG 540 consensus_10449#1 ------------------------------------------------------------ consensus_10449#0 GACGACCGGGGGTTCCTGAAGAGGGCCGGCGACGGGTGGAGCGGCGTGGAGGAGGTGCTC 600 consensus_10449#1 ------------------------------------------------------------ consensus_10449#0 CTGCCGGCCGAGCCCGCCGCGATGCGGAAGCTGCTGGAGATGGCCTCGTGCCGGCCGCCG 660 consensus_10449#1 ---------------------------------CACTTATTCGACTCTTCAAGGGGATCA 27 * * * *** * ** * consensus_10449#0 CCGCCGGTGCTGATGCCGGACTTCATCCTCCGCGACTTCATCCAGAAACTTTTCACGGAG 720 consensus_10449#1 CAGTTGGCACAGACAAGTTCCCAGTAACTCCCATATGTCAGGAAGTGTTGATTGTCTGGG 87 * * ** * ** * **** * *** ** ** * * * consensus_10449#0 AACAGAGAGCAACTTATTCAACTCTTCAAGGGGATCACAGTTGGCACAGACAAGTTCCCA 780 consensus_10449#1 GAGACAAGATCAGTTGTTCC-CGGTTGAGAAGGCTTATCACGTTCAGAGGTAA-TGGATA 145 * * * * ** *** * ** * ** * * ** ** ** * * consensus_10449#0 GTAACTCCAATATCTCAGGAAGTGTTGATTGT----CTGGGGAGAGCAAGATCAGTTGTT 836 consensus_10449#1 GTAAC---ATACTAGTACGAAGCTTCCATTTCAGTATTTAACTGAACACGGATTGACGTT 202 ***** * * * **** * *** * ** ** * * *** consensus_10449#0 CCCGGTTGAGAAGGCTTATGCAGTTCAGAGTTCTTTGGATGGGAAAGCTAGAGTGGAAAT 896 consensus_10449#1 TCCTGC--ACCAAATTCGCTCTGTCCA--GTTCTTTGGATGGGAAAGCTAGAGTGGAAAT 258 ** * * * * * ** ** ******************************* consensus_10449#0 CATAAGCAAAACA-GGCCATGCTCCACAGCTGGAGGATCCAACCCGGTTCAACAAGATCC 955 consensus_10449#1 CATAAGTAAAACACGGCCATGCTCCACAGCTGGAGGATCCCACCCGGTTCAACA-GATCC 317 ****** ****** ************************** ************* ***** consensus_10449#0 TGCTAGACTTCTTGCTGGCTACTCACAAGCCTGATCCTTCGTCAAATGGCGCATCGCAAT 1015 consensus_10449#1 TGCTAGACTTCTTGCTGGCTACTCACAAGCCTGATCCTTCGTCAAATGGCGCATCGCAAT 377 ************************************************************ consensus_10449#0 AAGTCGGATGCCCACTCGAATATTTGATTGATTGAAATAAGATGGTTAGCCACCTTCGTC 1075 consensus_10449#1 AAGTCGGATGCC-ACTCGAATATTTGATTGATTGAAATAAGATGGTTAGCCACCTTCGTC 436 ************ *********************************************** consensus_10449#0 CATTCATAGCTAAAATTTGTACTACGAATTATTTGAGAACGCACATTGAGAAATAATTAA 1135 consensus_10449#1 CA---AAAAAAAAA---------------------------------------------- 447 ** * * *** consensus_10449#0 AGAAAATGGGTGGATTGTTGATTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 1192 consensus_10449#1 --------------------------------------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||