These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_1045#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1964 fasta sequence [TCCAGACTATCTTGACATATGTCCGTAGCCCAGCTCTCTCCTCGCTTATCTCTGATCCTTCTCCTACCTGCTGCCCCCAGGTAATGTGTCTGCACATTCTTTGTGTGTGTACATGAAGTTTGAGAGGCGTTTTGCTCAAGACCGCGCAACGATTCCATATGACACCGCATCGTTGTCCATGCCTATCATGTTCATCCAGAGCCCCTGTTGATCTTCAGATAAGAGAAAAGCTCAAAATTAAAGAAGGCTTGTTTATTGATCATGTCAAGGATAGGTATCGACGGCGATGCGCTGGCTATGGCCATGGTTGTGCGGTTCTTGCGCAATAACGTTTTGATCTCGATCTCCTCTCCTCTCTCCAAAGTTTTTCTTTCTTTACTCCTCTGATGGAACAATGCATGCATTTACTGAGTTTTTGTCTCCTGTTCTTCCTCGTCTGCATGTTCTTGAATGGTTTGGTCGCTCTTATTCTTCTGTGATTTCCTTGTCCATCATTATCTCAGGGCATGCATGAAAGCTCTATAAATTAAGATGGAACCTTTTCTTTTAGTTTTGTTGATGATGACTAATTTGGTTTGTTGCTAGCTACTAGCTGTTGTTTCCTGTCTGAAAACTATGAAGCTATCTTGTAAGGTAGGTAAGACGAATGCGGAGGTTCTTACTACTTCGGCCCTTGCCTAGAGCTTCAGAAATATAAACTAAGATTACCATGAAGAACAGGTGTGTGCAACTTTATTTATGGTATTGATGAAAACTCAATCTAGTAAACATCATGTATGATCCAGTAGATCGATCGATTAGATTCATCGTACCTGAATCTATTTTTGCTTACCGTACTGTAGCTAGTCTTTCACCTTCAGTCTTTGCAAGTTATATTTTTTTATACTAGGTTTCGTTCTTGCATACTTGCAAATGCTCTTGTAATTGAGTTTTCAGAGTTCTCCACTTGCAATAACAAATATTTTGGTTGTCTTTCCATGAAGCAGATCAGATGGCTAGATAGATGGTAAATGATCTGAAAAATATAAAAGAAGATTACAGGCACTGTTTGACAATACTTAACTGAATCTATATGCAACTTATCTTTCAGTACATTGCACTGGAATTTGCCATTTGCTAGCACTTGCTGCCTATCTGTAGTGCTTATGGGATTCATGTCAGAACTAACTACTACCTGTATTTTGTAGGTTTAAGAGTGTAAATTATTGGTCCCCTTCTTGCATTTTCTCTCAATTTATTCAGCATCCAGAGTGCTATAAATTCACATCATCAATTCATCATCTCCAATATAATGCAGCTGCAAGTTTCATACATGGATGTGGCTTGTTTCCGACATCGCAGAGACAAATACCCAGTGTTCTAGATTCCAGAAATGTTATCAGTGACAATGTGTGTTCAGGCTAGGTGCCAAAGGAAGTACAGATAAGCTACAGTACATCAGGAATGAGAGGAGTGCATCAAAATACTGAAGACCATGATGGATATTTCGAAATTGCAAATGAGGGGTGGCCGGTCTGTAAAAACAGTTTTCTCCTAAAAGATCGACATTGCTCAAGCGACCTTAATCTAGAAAATAATTTCAAAGGAAACTAGGAATCATGGCATGGATCAATGAGGAGGCACTTTCTAAGCCAAGTGATCAAGTCAAGGTGCAAACTTATCACGAAGGTCTTTCAGAACTCATTCGAAGTGTTTTTGCGGCCTGCAATCCTAATCGGCCAATAACACATACGCCTTCTGGCCAAACTCCTCTACCCTTACTCTCATAAATAGGAGCTAACATTCATATGAGGTCAATGTACCAAGGAAAGGTTGATAACAATCAAAATCGAAAGGATGGAGTAACGATTGCGTGAGTGCTAGTCCTCAGAATTAATTGGCCAGACCATCAAACATTGTTCCTCATTGATTGGTAGTAATTAATTGTCTAGACATTGTGGAATGATGGGAAGGTATCTAGCTTT] [+] EMBL AK069918 [TCCAGACTATCTTGACATATGTCCGTAGCCCAGCTCTCTCCTCGCTTATCTCTGATCCTTCTCCTACCTGCTGCCCCCAGGTAATGTGTCTGCACATTCTTTGTGTGTGTACATGAAGTTTGAGAGGCGTTTTGCTCAAGACCGCGCAACGATTCCATATGACACCGCATCGTTGTCCATGCCTATCATGTTCATCCAGAGCCCCTGTTGATCTTCAGATAAGAGAAAAGCTCAAAATTAAAGAAGGCTTGTTTATTGATCATGTCAAGGATAGGTATCGACGGCGATGCGCTGGCTATGGCCATGGTTGTGCGGTTCTTGCGCAATAACGTTTTGATCTCGATCTCCTCTCCTCTCTCCAAAGTTTTTCTTTCTTTACTCCTCTGATGGAACAATGCATGCATTTACTGAGTTTTTGTCTCCTGTTCTTCCTCGTCTGCATGTTCTTGAATGGTTTGGTCGCTCTTATTCTTCTGTGATTTCCTTGTCCATCATTATCTCAGGGCATGCATGAAAGCTCTATAAATTAAGATGGAACCTTTTCTTTTAGTTTTGTTGATGATGACTAATTTGGTTTGTTGCTAGCTACTAGCTGTTGTTTCCTGTCTGAAAACTATGAAGCTATCTTGTAAGGTAGGTAAGACGAATGCGGAGGTTCTTACTACTTCGGCCCTTGCCTAGAGCTTCAGAAATATAAACTAAGATTACCATGAAGAACAGGTGTGTGCAACTTTATTTATGGTATTGATGAAAACTCAATCTAGTAAACATCATGTATGATCCAGTAGATCGATCGATTAGATTCATCGTACCTGAATCTATTTTTGCTTACCGTACTGTAGCTAGTCTTTCACCTTCAGTCTTTGCAAGTTATATTTTTTTATACTAGGTTTCGTTCTTGCATACTTGCAAATGCTCTTGTAATTGAGTTTTCAGAGTTCTCCACTTGCAATAACAAATATTTTGGTTGTCTTTCCATGAAGCAGATCAGATGGCTAGATAGATGGTAAATGATCTGAAAAATATAAAAGAAGATTACAGGCACTGTTTGACAATACTTAACTGAATCTATATGCAACTTATCTTTCAGTACATTGCACTGGAATTTGCCATTTGCTAGCACTTGCTGCCTATCTGTAGTGCTTATGGGATTCATGTCAGAACTAACTACTACCTGTATTTTGTAGGTTTAAGAGTGTAAATTATTGGTCCCCTTCTTGCATTTTCTCTCAATTTATTCAGCATCCAGAGTGCTATAAATTCACATCATCAATTCATCATCTCCAATATAATGCAGCTGCAAGTTTCATACATGGATGTGGCTTGTTTCCGACATCGCAGAGACAAATACCCAGTGTTCTAGATTCCAGAAATGTTATCAGTGACAATGTGTGTTCAGGCTAGGTGCCAAAGGAAGTACAGATAAGCTACAGTACATCAGGAATGAGAGGAGTGCATCAAAATACTGAAGACCATGATGGATATTTCGAAATTGCAAATGAGGGGTGGCCGGTCTGTAAAAACAGTTTTCTCCTAAAAGATCGACATTGCTCAAGCGACCTTAATCTAGAAAATAATTTCAAAGGAAACTAGGAATCATGGCATGGATCAATGAGGAGGCACTTTCTAAGCCAAGTGATCAAGTCAAGGTGCAAACTTATCACGAAGGTCTTTCAGAACTCATTCGAAGTGTTTTTGCGGCCTGCAATCCTAATCGGCCAATAACACATACGCCTTCTGGCCAAACTCCTCTACCCTTACTCTCATAAATAGGAGCTAACATTCATATGAGGTCAATGTACCAAGGAAAGGTTGATAACAATCAAAATCGAAAGGATGGAGTAACGATTGCGTGAGTGCTAGTCCTCAGAATTAATTGGCCAGACCATCAAACATTGTTCCTCATTGATTGGTAGTAATTAATTGTCTAGACATTGTGGAATGATGGGAAGGTATCTAGCTTT] consensusID : consensus_1045#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 746 fasta sequence [CCATCCCTATGGATCTTGACTTCAACCTTCTTGAGACTGGATCATTGGCAATGGCAGTAATCACCACCGCATTTACACTTCAGGATGACAAATGGCATTACTTGAAGGGTTTGAATCTAGTATTTTCCTATATCGTCATAGCGGTGTGCTTTTTCGTCATGAAAGCTCTCCCAACGCTAAAAAAGGAAGATGACTAAATGTGTTGTTTTGAACCGAATCAAGAGACCGATGAGACGATGCATGCATGTGAGTTGAAGACTGTAGCTAGATCGGTGAGCTCCTGATCAAGCTGTTCATCATCATGACGGGTTCAGCTAATTAATCAGCAACAACAGCAGTGAATATATGGTAATGTGTCTGCACATTCTTTGTGTGTGTACATGAAGTTTGAGAGGCGTTTTGCTCAAGACCGCGCAACGATTCCATATGACACCGCATCGTTGTCCATGCCTATCATGTTCATCCAGAGCCCCTGTTGATCTTCAGATAAGAGAAAAGCTCAAAATTAAAGAAGGCTTGTTTATTGATCATGTCAAGGATAGGTATCGACGGCGATGCGCTGGCTATGGCCATGGTTGTGCGGTTCTTGCGCAATAACGTTTTGATCTCGATCTCCTCTCCTCTCTCCAAAGTTTTTCTTTCTTTACTCCTCTGATGGAACAATGCATGCATTTACTGAGTTTTTGTCTCCTGTTCTTCCTCGTCTGCATGTTCTTGAATGGTTTGGTCGCTCTTAAAAAGAAAGA] [-] EMBL CB683251 [CCATCCCTATGGATCTTGACTTCAACCTTCTTGAGACTGGATCATTGGCAATGGCAGTAATCACCACCGCATTTACACTTCAGGATGACAAATGGCATTACTTGAAGGGTTTGAATCTAGTATTTTCCTATATCGTCATAGCGGTGTGCTTTTTCGTCATGAAAGCTCTCCCAACGCTAAAAAAGGAAGATGACTAAATGTGTTGTTTTGAACCGAATCAAGAGACCGATGAGACGATGCATGCATGTGAGTTGAAGACTGTAGCTAGATCGGTGAGCTCCTGATCAAGCTGTTCATCATCATGACGGGTTCAGCTAATTAATCAGCAACAACAGCAGTGAATATATGGTAATGTGTCTGCACATTCTTTGTGTGTGTACATGAAGTTTGAGAGGCGTTTTGCTCAAGACCGCGCAACGATTCCATATGACACCGCATCGTTGTCCATGCCTATCATGTTCATCCAGAGCCCCTGTTGATCTTCAGATAAGAGAAAAGCTCAAAATTAAAGAAGGCTTGTTTATTGATCATGTCAAGGATAGGTATCGACGGCGATGCGCTGGCTATGGCCATGGTTGTGCGGTTCTTGCGCAATAACGTTTTGATCTCGATCTCCTCTCCTCTCTCCAAAGTTTTTCTTTCTTTACTCCTCTGATGGAACAATGCATGCATTTACTGAGTTTTTGTCTCCTGTTCTTCCTCGTCTGCATGTTCTTGAATGGTTTGGTCGCTCTTAAAAAGAAAGA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_1045#0 ------------------------------------------------------------ consensus_1045#1 CCATCCCTATGGATCTTGACTTCAACCTTCTTGAGACTGGATCATTGGCAATGGCAGTAA 60 consensus_1045#0 ------------------------------------------------------------ consensus_1045#1 TCACCACCGCATTTACACTTCAGGATGACAAATGGCATTACTTGAAGGGTTTGAATCTAG 120 consensus_1045#0 ------------------------------------------------------------ consensus_1045#1 TATTTTCCTATATCGTCATAGCGGTGTGCTTTTTCGTCATGAAAGCTCTCCCAACGCTAA 180 consensus_1045#0 ------------------------------------------------------------ consensus_1045#1 AAAAGGAAGATGACTAAATGTGTTGTTTTGAACCGAATCAAGAGACCGATGAGACGATGC 240 consensus_1045#0 ------------TCCAGACTAT--CTTGAC--ATATGTCCGTAGCCCAGCTCTC-----T 39 consensus_1045#1 ATGCATGTGAGTTGAAGACTGTAGCTAGATCGGTGAGCTCCTGATCAAGCTGTTCATCAT 300 * ***** * ** ** * * * * * **** * * consensus_1045#0 CCTCGCTTATCT--CTGATCCTTCTCCTAC--CTGCTGCCCCCA---GGTAATGTGTCTG 92 consensus_1045#1 CATGACGGGTTCAGCTAATTAATCAGCAACAACAGCAGTGAATATATGGTAATGTGTCTG 360 * * * * ** ** ** * ** * ** * * ************* consensus_1045#0 CACATTCTTTGTGTGTGTACATGAAGTTTGAGAGGCGTTTTGCTCAAGACCGCGCAACGA 152 consensus_1045#1 CACATTCTTTGTGTGTGTACATGAAGTTTGAGAGGCGTTTTGCTCAAGACCGCGCAACGA 420 ************************************************************ consensus_1045#0 TTCCATATGACACCGCATCGTTGTCCATGCCTATCATGTTCATCCAGAGCCCCTGTTGAT 212 consensus_1045#1 TTCCATATGACACCGCATCGTTGTCCATGCCTATCATGTTCATCCAGAGCCCCTGTTGAT 480 ************************************************************ consensus_1045#0 CTTCAGATAAGAGAAAAGCTCAAAATTAAAGAAGGCTTGTTTATTGATCATGTCAAGGAT 272 consensus_1045#1 CTTCAGATAAGAGAAAAGCTCAAAATTAAAGAAGGCTTGTTTATTGATCATGTCAAGGAT 540 ************************************************************ consensus_1045#0 AGGTATCGACGGCGATGCGCTGGCTATGGCCATGGTTGTGCGGTTCTTGCGCAATAACGT 332 consensus_1045#1 AGGTATCGACGGCGATGCGCTGGCTATGGCCATGGTTGTGCGGTTCTTGCGCAATAACGT 600 ************************************************************ consensus_1045#0 TTTGATCTCGATCTCCTCTCCTCTCTCCAAAGTTTTTCTTTCTTTACTCCTCTGATGGAA 392 consensus_1045#1 TTTGATCTCGATCTCCTCTCCTCTCTCCAAAGTTTTTCTTTCTTTACTCCTCTGATGGAA 660 ************************************************************ consensus_1045#0 CAATGCATGCATTTACTGAGTTTTTGTCTCCTGTTCTTCCTCGTCTGCATGTTCTTGAAT 452 consensus_1045#1 CAATGCATGCATTTACTGAGTTTTTGTCTCCTGTTCTTCCTCGTCTGCATGTTCTTGAAT 720 ************************************************************ consensus_1045#0 GGTTTGGTCGCTCTTATTCTTCTGTGATTTCCTTGTCCATCATTATCTCAGGGCATGCAT 512 consensus_1045#1 GGTTTGGTCGCTCTTAAAAAGAAAGA---------------------------------- 746 **************** consensus_1045#0 GAAAGCTCTATAAATTAAGATGGAACCTTTTCTTTTAGTTTTGTTGATGATGACTAATTT 572 consensus_1045#1 ------------------------------------------------------------ consensus_1045#0 GGTTTGTTGCTAGCTACTAGCTGTTGTTTCCTGTCTGAAAACTATGAAGCTATCTTGTAA 632 consensus_1045#1 ------------------------------------------------------------ consensus_1045#0 GGTAGGTAAGACGAATGCGGAGGTTCTTACTACTTCGGCCCTTGCCTAGAGCTTCAGAAA 692 consensus_1045#1 ------------------------------------------------------------ consensus_1045#0 TATAAACTAAGATTACCATGAAGAACAGGTGTGTGCAACTTTATTTATGGTATTGATGAA 752 consensus_1045#1 ------------------------------------------------------------ consensus_1045#0 AACTCAATCTAGTAAACATCATGTATGATCCAGTAGATCGATCGATTAGATTCATCGTAC 812 consensus_1045#1 ------------------------------------------------------------ consensus_1045#0 CTGAATCTATTTTTGCTTACCGTACTGTAGCTAGTCTTTCACCTTCAGTCTTTGCAAGTT 872 consensus_1045#1 ------------------------------------------------------------ consensus_1045#0 ATATTTTTTTATACTAGGTTTCGTTCTTGCATACTTGCAAATGCTCTTGTAATTGAGTTT 932 consensus_1045#1 ------------------------------------------------------------ consensus_1045#0 TCAGAGTTCTCCACTTGCAATAACAAATATTTTGGTTGTCTTTCCATGAAGCAGATCAGA 992 consensus_1045#1 ------------------------------------------------------------ consensus_1045#0 TGGCTAGATAGATGGTAAATGATCTGAAAAATATAAAAGAAGATTACAGGCACTGTTTGA 1052 consensus_1045#1 ------------------------------------------------------------ consensus_1045#0 CAATACTTAACTGAATCTATATGCAACTTATCTTTCAGTACATTGCACTGGAATTTGCCA 1112 consensus_1045#1 ------------------------------------------------------------ consensus_1045#0 TTTGCTAGCACTTGCTGCCTATCTGTAGTGCTTATGGGATTCATGTCAGAACTAACTACT 1172 consensus_1045#1 ------------------------------------------------------------ consensus_1045#0 ACCTGTATTTTGTAGGTTTAAGAGTGTAAATTATTGGTCCCCTTCTTGCATTTTCTCTCA 1232 consensus_1045#1 ------------------------------------------------------------ consensus_1045#0 ATTTATTCAGCATCCAGAGTGCTATAAATTCACATCATCAATTCATCATCTCCAATATAA 1292 consensus_1045#1 ------------------------------------------------------------ consensus_1045#0 TGCAGCTGCAAGTTTCATACATGGATGTGGCTTGTTTCCGACATCGCAGAGACAAATACC 1352 consensus_1045#1 ------------------------------------------------------------ consensus_1045#0 CAGTGTTCTAGATTCCAGAAATGTTATCAGTGACAATGTGTGTTCAGGCTAGGTGCCAAA 1412 consensus_1045#1 ------------------------------------------------------------ consensus_1045#0 GGAAGTACAGATAAGCTACAGTACATCAGGAATGAGAGGAGTGCATCAAAATACTGAAGA 1472 consensus_1045#1 ------------------------------------------------------------ consensus_1045#0 CCATGATGGATATTTCGAAATTGCAAATGAGGGGTGGCCGGTCTGTAAAAACAGTTTTCT 1532 consensus_1045#1 ------------------------------------------------------------ consensus_1045#0 CCTAAAAGATCGACATTGCTCAAGCGACCTTAATCTAGAAAATAATTTCAAAGGAAACTA 1592 consensus_1045#1 ------------------------------------------------------------ consensus_1045#0 GGAATCATGGCATGGATCAATGAGGAGGCACTTTCTAAGCCAAGTGATCAAGTCAAGGTG 1652 consensus_1045#1 ------------------------------------------------------------ consensus_1045#0 CAAACTTATCACGAAGGTCTTTCAGAACTCATTCGAAGTGTTTTTGCGGCCTGCAATCCT 1712 consensus_1045#1 ------------------------------------------------------------ consensus_1045#0 AATCGGCCAATAACACATACGCCTTCTGGCCAAACTCCTCTACCCTTACTCTCATAAATA 1772 consensus_1045#1 ------------------------------------------------------------ consensus_1045#0 GGAGCTAACATTCATATGAGGTCAATGTACCAAGGAAAGGTTGATAACAATCAAAATCGA 1832 consensus_1045#1 ------------------------------------------------------------ consensus_1045#0 AAGGATGGAGTAACGATTGCGTGAGTGCTAGTCCTCAGAATTAATTGGCCAGACCATCAA 1892 consensus_1045#1 ------------------------------------------------------------ consensus_1045#0 ACATTGTTCCTCATTGATTGGTAGTAATTAATTGTCTAGACATTGTGGAATGATGGGAAG 1952 consensus_1045#1 ------------------------------------------------------------ consensus_1045#0 GTATCTAGCTTT 1964 consensus_1045#1 ------------ |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||