These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_10452#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 7 consensus length = 839 fasta sequence [TTTTTTTTTTTTTTTTTTTT--TCAAAATAACCTTTAATGGTTTTCAGTAGCCTA-GGAGGCTTATTTATGATCATAGTCAGATTACACTTATTGGCGATAAAATA-AGCCCTATAAATT-AGTGTATT-GTGAGTATGAAAGCAAATAATAAAAAAAAGGGCGTAACGTGTTATACATGTCCCACGGCCCGTATATCTTACTCTACAACATTGCCTGATTGACTTGGCTATAAAATATACATATAGATTACATCTGTGGTCTTGTCTGTACTACGTATAGCTTCCCTTCCTTCACTGCACCCTCAACATCCTGTGGGGACCCATAAAGCTCCTCAATGGCATGACCAGCCCGTGCAATGCTCGAGAGGATAGATTTTTGGAATCCCTGATCTGTAATGAGGGGGTCGGTGGTGTAGTCGAGTATGACTTCATCTTCCTCATCCATAGGGACACTATCATACAGTCCTGCTCCAGCATACCCTTCTAAATCCTCACCGTTGGAATCTGAACGAAAGATGATTGATCTCTTTATGAAGAGACCAATTGGCTTGCTTGGGAAACCCAGTACCTTGGGAGAGTCAAGGTCGTTTTTCTTACATACAAAGCTCATGGCGCGACCAGGATAGGCTCCTACAAGTGTTTCTCCAAGCCCTTTCACCACTTCAGCATATATCTCAGACGAATCTCCCGATGATGGGTTAGTAGTATGAATGACAAAGGCATAGTCTGCATTGACAATTTCTTGTACAAGTACAGCCATGGAAAGGTAGTCATGATCAAGCTTCACCTTACGAGTGCTAAAATATGCTCTTTCATTCCATTTTGACGCCCAAACCTTTTTAAT] [-] EMBL C98446 [TTTTTTTTTTTTTTTTTTTTGATCAAAATAACCTTTAATGGTTTTCAGTAGCCTA GGAGGCTTATTTATGATCATAGTCAGATTACACTTATTGGCGATAAAATA AGCCCTATAAATT AGTGTATT GTGAGTATGAAAGCAAATAATAAAAAAAAGGGCGTAACGTGTTATACATGTCCCACGGCCCGTATATCTTACTCTACAACATTGCCTGATTGACTTGGCTATAAAATATACATATAGATTACATCTGTGGTCTTGTCTGTACTACGAATAGCTTCCCTTCCTTCACTG ] [+] EMBL CA760426 [TTTTTTTTTTTTTTTTTTTTGATCAAAATAACCTTTAATGGTTTTCAGTAGCCTA GGAGGCTTATTTATGATCATAGTCAGATTACACTTATTGGCGATAAAATA AGCCCTATAAATT AGTGTATT GTGAGTATGAAAGCAAATAAT AAAAAAAGGGCGTAACGTGTTATACATGTCCC CCCTTGTCTCGTCCTCT ] [+] EMBL CB677108 [ tcTTTTTT TTAAAATAACCTTTAATGGTTTTCAGTAGCCTC CGAGGCTTATTTATGATCATAGTCAGATTACACTTATTGGCGATAAAATA AGCCCTATAAATT AGTGTATT GTGAGTATGAAAGCAAATAATAAAAAAAAGGGCGTAACGTGTTATACATGTCCCACGGCCCGTATATCTTACTCTACAACATTGCCTGATTGACTTGGCTATAAAATATACATATAGATTACATCTGTGGTCTTGTCTGTACTACGTATAGCTTCCCTTCCTTCACTGCACCCTCAACATCCTGTGGGGACCCATAAAGCTCCTCAATGGCATGACCAGCCCGTGCAATGCTCGAGAGGATAGATTTTTGGAATCCCTGATCTGTAATGAGGGGGTCGGTGGTGTAGTCGAGTATGACTTCATCTTCCTCATCCATAGGGACACTATCATACAGTCCTGCTCCAGCATACCCTTCTAAATCCTCACCGTTGGAATCTGAACGAAAGATGATTGATCTCTTTATGAAGAGACCAATTGGCTTGCTTGGGAAACCCAGTACCTTGGGAGAGTCAAGGTCGTTTTTCTTACATACAAAGCTCATGGCGCGACCAGGATAGGCTCCTACAAGTGTTTCTCCAAGCCCTTTCACCACTTCAGCATATATCTCAGACGAATCTCCCGATGATGGGTTAGTAGTATGAATGACAAAGGCATAGTCTGCATTGACAATTTCTTGTACAAGTACAGCCATGGAAAGGTAGTCATGATCAAGCTTCACCTTACGAGTGCTA ] [+] EMBL CB671799 [ AACCTTTAATGGTTTTCAGTAGCCTA GGAGGCTTATTTATGATCATAGTCAGATTACACTTATTGGCGATAAAATA AGCCCTATAAATT AGTGTATT GTGAGTATGAAAGCAAATAATAAAAAAAAGGGCGTAACGTGTTATACATGTCCCACGGCCCGTATATCTTACTCTACAACATTGCCTGATTGACTTGGCTATAAAATATACATATAGATTACATCTGTGGTCTTGTCTGTACTACGTATAGCTTCCCTTCCTTCACTGCACCCTCAACATCCTGTGGGGACCCATAAAGCTCCTCAATGGCATGACCAGCCCGTGCAATGCTCGAGAGGATAGATTTTTGGAATCCCTGATCTGTAATGAGGGGGTCGGTGGTGTAGTCGAGTATGACTTCATCTTCCTCATCCATAGGGACACTATCATACAGTCCTGCTCCAGCATACCCTTCTAAATCCTCACCGTTGGAATCTGAACGAAAGATGATTGATCTCTTTATGAAGAGACCAATTGGCTTGCTTGGGAAACCCAGTACCTTGGGAGAGTCAAGGTCGTTTTTCTTACATACAAAGCTCATGGCGCGACCAGGATAGGCTCCTACAAGTGTTTCTCCAAGCCCTTTCACCACTTCAGCATATATCTCAGACGAATCTCCCGATGATGGGTTAGTAGTATGAATGACAAAGGCATAGTCTGCATTGACAATTTCTTGTACAAGTACAGCCATGGAAAGGTAGTCATGATCAAGCTTCACCTTACGAGTGCTNAAATATGCTCTTTCAT ] [-] EMBL AK058235 [ ACCTTTAATGGTTTTCAGTAGCCTA GGAGGCTTATTTATGATCATAGTCAGATTACACTTATTGGCGATAAAATA AGCCCTATAAATT AGTGTATT GTGAGTATGAAAGCAAATAATAAAAAAAAGGGCGTAACGTGTTATACATGTCCCACGGCCCGTATATCTTACTCTACAACATTGCCTGATTGACTTGGCTATAAAATATACATATAGATTACATCTGTGGTCTTGTCTGTACTACGTATAGCTTCCCTTCCTTCACTGCACCCTCAACATCCTGTGGGGACCCATAAAGCTCCTCAATGGCATGACCAGCCCGTGCAATGCTCGAGAGGATAGATTTTT ] [+] EMBL CB677191 [ TTTAATGGTTTTCAGTAGCCTACCGAGGCTTATTTATGATCATAGTCAGATTACACTTATTGGCGATAAAATA AGCCCTATAAATT AGTGTATT GTGAGTATGAAAGCAAATAATAAAAAAAAGGGCGTAACGTGTTATACATGTCCCACGGCCCGTATATCTTACTCTACAACATTGCCTGATTGACTTGGCTATAAAATATACATATAGATTACATCTGTGGTCTTGTCTGTACTACGTATAGCTTCCCTTCCTTCACTGCACCCTCAACATCCTGTGGGGACCCATAAAGCTCCTCAATGGCATGACCAGCCCGTGCAATGCTCGAGAGGATAGATTTTTGGAATCCCTGATCTGTAATGAGGGGGTCGGTGGTGTAGTCGAGTATGACTTCATCTTCCTCATCCATAGGGACACTATCATACAGTCCTGCTCCAGCATACCCTTCTAAATCCTCACCGTTGGAATCTGAACGAAAGATGATTGATCTCTTTATGAAGAGACCAATTGGCTTGCTTGGGAAACCCAGTACCTTGGGAGAGTCAAGGTCGTTTTTCTTACATACAAAGCTCATGGCGCGACCAGGATAGGCTCCTACAAGTGTTTCTCCAAGCCCTTTCACCACTTCAGCATATATCTCAGACGAATCTCCCGATGATGGGTTAGTAGTATGAATGACAAAGGCATAGTCTGCATTGACAATTTCTTGTACAAGTACAGCCATGGAAAGGTAGTCATGATCAAGCTTCACCTTACGAGTGCTAAAATATGCTCTTTCATTCCATTTTGACGCCCAAACCTTTTTAAT] [+] EMBL CB644344 [ TAAAATANAGCCCTATAAATTCAGTGTATTGGTGAGTATGAAAGCAAATAATAAAAAAAAGGGCGTAACGTGTTATACATGTCCCACGGCCCGTATATCTTACTCTACAACATTGCCTGATTGACTTGGCTATAAAATATACATATAGATTACATCTGTGGTCTTGTCTGTACTACGTATAGCTTCCCTTCCTTCACTGCACCCTCAACATCCTGTGGGGACCCATAAAGCTCCTCAATGGCATGACCAGCCCGTGCAATGCTCGAGAGGATAGATTTTTGGAATCCCTGATCTGTAATGAGGGGGTCGGTGGTGTAGTCGAGTATGACTTCATCTTCCTCATCCATAGGGACACTATCATACAGTCCTGCTCCAGCATACCCTTCTAAATCCTCACCGTTGGAATCTGAACGAAAGATGATTGATCTCTTTATGAAGAGACCAATTGGCTTGCTTGGGAAACCCAGTACCTTGGGAGAGTCAAGGTCGTTTTTCTTACATACAAAGCTCATGGCGCGACCAGGATAGGCTCCTACAAGTGTTTCTCCAAGCCCTTTCACCACTTCAGCATATATCTCAGACGAATCTCCCGATGATGGGTTAGTAGTATGAATGACAAAGGCATAGTCTGCATTGACAATTTCTTGTACAAGTACAGCCATGGAAAGGTAGTCAT ] clustalw multiple alignements is not computed in this case |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||