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Oryza sativa
cluster # 10452 cluster # 10452       Sequences # 7       consensus # 1


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_10452#0 length = 839 sequences # 7  

consensusID : consensus_10452#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 7
consensus length = 839
fasta sequence
                              [TTTTTTTTTTTTTTTTTTTT--TCAAAATAACCTTTAATGGTTTTCAGTAGCCTA-GGAGGCTTATTTATGATCATAGTCAGATTACACTTATTGGCGATAAAATA-AGCCCTATAAATT-AGTGTATT-GTGAGTATGAAAGCAAATAATAAAAAAAAGGGCGTAACGTGTTATACATGTCCCACGGCCCGTATATCTTACTCTACAACATTGCCTGATTGACTTGGCTATAAAATATACATATAGATTACATCTGTGGTCTTGTCTGTACTACGTATAGCTTCCCTTCCTTCACTGCACCCTCAACATCCTGTGGGGACCCATAAAGCTCCTCAATGGCATGACCAGCCCGTGCAATGCTCGAGAGGATAGATTTTTGGAATCCCTGATCTGTAATGAGGGGGTCGGTGGTGTAGTCGAGTATGACTTCATCTTCCTCATCCATAGGGACACTATCATACAGTCCTGCTCCAGCATACCCTTCTAAATCCTCACCGTTGGAATCTGAACGAAAGATGATTGATCTCTTTATGAAGAGACCAATTGGCTTGCTTGGGAAACCCAGTACCTTGGGAGAGTCAAGGTCGTTTTTCTTACATACAAAGCTCATGGCGCGACCAGGATAGGCTCCTACAAGTGTTTCTCCAAGCCCTTTCACCACTTCAGCATATATCTCAGACGAATCTCCCGATGATGGGTTAGTAGTATGAATGACAAAGGCATAGTCTGCATTGACAATTTCTTGTACAAGTACAGCCATGGAAAGGTAGTCATGATCAAGCTTCACCTTACGAGTGCTAAAATATGCTCTTTCATTCCATTTTGACGCCCAAACCTTTTTAAT]

[-] EMBL C98446               [TTTTTTTTTTTTTTTTTTTTGATCAAAATAACCTTTAATGGTTTTCAGTAGCCTA GGAGGCTTATTTATGATCATAGTCAGATTACACTTATTGGCGATAAAATA AGCCCTATAAATT AGTGTATT GTGAGTATGAAAGCAAATAATAAAAAAAAGGGCGTAACGTGTTATACATGTCCCACGGCCCGTATATCTTACTCTACAACATTGCCTGATTGACTTGGCTATAAAATATACATATAGATTACATCTGTGGTCTTGTCTGTACTACGAATAGCTTCCCTTCCTTCACTG                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                   ]
[+] EMBL CA760426             [TTTTTTTTTTTTTTTTTTTTGATCAAAATAACCTTTAATGGTTTTCAGTAGCCTA GGAGGCTTATTTATGATCATAGTCAGATTACACTTATTGGCGATAAAATA AGCCCTATAAATT AGTGTATT GTGAGTATGAAAGCAAATAAT AAAAAAAGGGCGTAACGTGTTATACATGTCCC    CCCTTGTCTCGTCCTCT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                ]
[+] EMBL CB677108             [            tcTTTTTT  TTAAAATAACCTTTAATGGTTTTCAGTAGCCTC CGAGGCTTATTTATGATCATAGTCAGATTACACTTATTGGCGATAAAATA AGCCCTATAAATT AGTGTATT GTGAGTATGAAAGCAAATAATAAAAAAAAGGGCGTAACGTGTTATACATGTCCCACGGCCCGTATATCTTACTCTACAACATTGCCTGATTGACTTGGCTATAAAATATACATATAGATTACATCTGTGGTCTTGTCTGTACTACGTATAGCTTCCCTTCCTTCACTGCACCCTCAACATCCTGTGGGGACCCATAAAGCTCCTCAATGGCATGACCAGCCCGTGCAATGCTCGAGAGGATAGATTTTTGGAATCCCTGATCTGTAATGAGGGGGTCGGTGGTGTAGTCGAGTATGACTTCATCTTCCTCATCCATAGGGACACTATCATACAGTCCTGCTCCAGCATACCCTTCTAAATCCTCACCGTTGGAATCTGAACGAAAGATGATTGATCTCTTTATGAAGAGACCAATTGGCTTGCTTGGGAAACCCAGTACCTTGGGAGAGTCAAGGTCGTTTTTCTTACATACAAAGCTCATGGCGCGACCAGGATAGGCTCCTACAAGTGTTTCTCCAAGCCCTTTCACCACTTCAGCATATATCTCAGACGAATCTCCCGATGATGGGTTAGTAGTATGAATGACAAAGGCATAGTCTGCATTGACAATTTCTTGTACAAGTACAGCCATGGAAAGGTAGTCATGATCAAGCTTCACCTTACGAGTGCTA                                            ]
[+] EMBL CB671799             [                             AACCTTTAATGGTTTTCAGTAGCCTA GGAGGCTTATTTATGATCATAGTCAGATTACACTTATTGGCGATAAAATA AGCCCTATAAATT AGTGTATT GTGAGTATGAAAGCAAATAATAAAAAAAAGGGCGTAACGTGTTATACATGTCCCACGGCCCGTATATCTTACTCTACAACATTGCCTGATTGACTTGGCTATAAAATATACATATAGATTACATCTGTGGTCTTGTCTGTACTACGTATAGCTTCCCTTCCTTCACTGCACCCTCAACATCCTGTGGGGACCCATAAAGCTCCTCAATGGCATGACCAGCCCGTGCAATGCTCGAGAGGATAGATTTTTGGAATCCCTGATCTGTAATGAGGGGGTCGGTGGTGTAGTCGAGTATGACTTCATCTTCCTCATCCATAGGGACACTATCATACAGTCCTGCTCCAGCATACCCTTCTAAATCCTCACCGTTGGAATCTGAACGAAAGATGATTGATCTCTTTATGAAGAGACCAATTGGCTTGCTTGGGAAACCCAGTACCTTGGGAGAGTCAAGGTCGTTTTTCTTACATACAAAGCTCATGGCGCGACCAGGATAGGCTCCTACAAGTGTTTCTCCAAGCCCTTTCACCACTTCAGCATATATCTCAGACGAATCTCCCGATGATGGGTTAGTAGTATGAATGACAAAGGCATAGTCTGCATTGACAATTTCTTGTACAAGTACAGCCATGGAAAGGTAGTCATGATCAAGCTTCACCTTACGAGTGCTNAAATATGCTCTTTCAT                            ]
[-] EMBL AK058235             [                              ACCTTTAATGGTTTTCAGTAGCCTA GGAGGCTTATTTATGATCATAGTCAGATTACACTTATTGGCGATAAAATA AGCCCTATAAATT AGTGTATT GTGAGTATGAAAGCAAATAATAAAAAAAAGGGCGTAACGTGTTATACATGTCCCACGGCCCGTATATCTTACTCTACAACATTGCCTGATTGACTTGGCTATAAAATATACATATAGATTACATCTGTGGTCTTGTCTGTACTACGTATAGCTTCCCTTCCTTCACTGCACCCTCAACATCCTGTGGGGACCCATAAAGCTCCTCAATGGCATGACCAGCCCGTGCAATGCTCGAGAGGATAGATTTTT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  ]
[+] EMBL CB677191             [                                 TTTAATGGTTTTCAGTAGCCTACCGAGGCTTATTTATGATCATAGTCAGATTACACTTATTGGCGATAAAATA AGCCCTATAAATT AGTGTATT GTGAGTATGAAAGCAAATAATAAAAAAAAGGGCGTAACGTGTTATACATGTCCCACGGCCCGTATATCTTACTCTACAACATTGCCTGATTGACTTGGCTATAAAATATACATATAGATTACATCTGTGGTCTTGTCTGTACTACGTATAGCTTCCCTTCCTTCACTGCACCCTCAACATCCTGTGGGGACCCATAAAGCTCCTCAATGGCATGACCAGCCCGTGCAATGCTCGAGAGGATAGATTTTTGGAATCCCTGATCTGTAATGAGGGGGTCGGTGGTGTAGTCGAGTATGACTTCATCTTCCTCATCCATAGGGACACTATCATACAGTCCTGCTCCAGCATACCCTTCTAAATCCTCACCGTTGGAATCTGAACGAAAGATGATTGATCTCTTTATGAAGAGACCAATTGGCTTGCTTGGGAAACCCAGTACCTTGGGAGAGTCAAGGTCGTTTTTCTTACATACAAAGCTCATGGCGCGACCAGGATAGGCTCCTACAAGTGTTTCTCCAAGCCCTTTCACCACTTCAGCATATATCTCAGACGAATCTCCCGATGATGGGTTAGTAGTATGAATGACAAAGGCATAGTCTGCATTGACAATTTCTTGTACAAGTACAGCCATGGAAAGGTAGTCATGATCAAGCTTCACCTTACGAGTGCTAAAATATGCTCTTTCATTCCATTTTGACGCCCAAACCTTTTTAAT]
[+] EMBL CB644344             [                                                                                                   TAAAATANAGCCCTATAAATTCAGTGTATTGGTGAGTATGAAAGCAAATAATAAAAAAAAGGGCGTAACGTGTTATACATGTCCCACGGCCCGTATATCTTACTCTACAACATTGCCTGATTGACTTGGCTATAAAATATACATATAGATTACATCTGTGGTCTTGTCTGTACTACGTATAGCTTCCCTTCCTTCACTGCACCCTCAACATCCTGTGGGGACCCATAAAGCTCCTCAATGGCATGACCAGCCCGTGCAATGCTCGAGAGGATAGATTTTTGGAATCCCTGATCTGTAATGAGGGGGTCGGTGGTGTAGTCGAGTATGACTTCATCTTCCTCATCCATAGGGACACTATCATACAGTCCTGCTCCAGCATACCCTTCTAAATCCTCACCGTTGGAATCTGAACGAAAGATGATTGATCTCTTTATGAAGAGACCAATTGGCTTGCTTGGGAAACCCAGTACCTTGGGAGAGTCAAGGTCGTTTTTCTTACATACAAAGCTCATGGCGCGACCAGGATAGGCTCCTACAAGTGTTTCTCCAAGCCCTTTCACCACTTCAGCATATATCTCAGACGAATCTCCCGATGATGGGTTAGTAGTATGAATGACAAAGGCATAGTCTGCATTGACAATTTCTTGTACAAGTACAGCCATGGAAAGGTAGTCAT                                                                      ]


>consensus_10452#0 TTTTTTTTTTTTTTTTTTTTTCAAAATAACCTTTAATGGTTTTCAGTAGCCTAGGAGGCT TATTTATGATCATAGTCAGATTACACTTATTGGCGATAAAATAAGCCCTATAAATTAGTG TATTGTGAGTATGAAAGCAAATAATAAAAAAAAGGGCGTAACGTGTTATACATGTCCCAC GGCCCGTATATCTTACTCTACAACATTGCCTGATTGACTTGGCTATAAAATATACATATA GATTACATCTGTGGTCTTGTCTGTACTACGTATAGCTTCCCTTCCTTCACTGCACCCTCA ACATCCTGTGGGGACCCATAAAGCTCCTCAATGGCATGACCAGCCCGTGCAATGCTCGAG AGGATAGATTTTTGGAATCCCTGATCTGTAATGAGGGGGTCGGTGGTGTAGTCGAGTATG ACTTCATCTTCCTCATCCATAGGGACACTATCATACAGTCCTGCTCCAGCATACCCTTCT AAATCCTCACCGTTGGAATCTGAACGAAAGATGATTGATCTCTTTATGAAGAGACCAATT GGCTTGCTTGGGAAACCCAGTACCTTGGGAGAGTCAAGGTCGTTTTTCTTACATACAAAG CTCATGGCGCGACCAGGATAGGCTCCTACAAGTGTTTCTCCAAGCCCTTTCACCACTTCA GCATATATCTCAGACGAATCTCCCGATGATGGGTTAGTAGTATGAATGACAAAGGCATAG TCTGCATTGACAATTTCTTGTACAAGTACAGCCATGGAAAGGTAGTCATGATCAAGCTTC ACCTTACGAGTGCTAAAATATGCTCTTTCATTCCATTTTGACGCCCAAACCTTTTTAAT



clustalw multiple alignements is not computed in this case


Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)