These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_10458#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 6 consensus length = 949 fasta sequence [GCTTTTTTGGTACGTACTTAACACTGGTTTCACCCTGACAACAGCAATAACCGAGTGGAGCAGTGTGTTATATTCTGTGATCTATACTGCTGTCCCAACTATCGTTGTTGCGATTCTCGACAAGGATCTGAGTAGGAGGACATTGTTGAAATACCCCCAACTCTATGGTGCAGGGCAGCGCGAGGAGAGTTACAACCTAAGGCTGTTCATTTTTGTCATGCTGGACTCCATCTGGCAGAGCCTCGCAGTTTTCTTTATCCCTTACCTTGCATACAGAAAGAGTACAATCGACGG-TGCGAGTCTGGGAGACCTCTGGACACTAGCTGTTGTCATTCTTGTGAACATTCACCTTGCAATCGATGTCATCAGATGGAACTGGATCACGCACGCAGCAATATGGGGCAGTATAGTCGCAACGCTGATTTGTGTCATGGTCATAGACTCCATACCGATATTGCCTGGTTTCTGGGCAATATACAAGGTGATGGGAACTGGACTGTTTTGGGCATTGCTGCTCGCGGTAATTGTGGTTGGAATGATTCCTCATTTTGTCGCTAAGGCCATAAGGGAGCATTTCCTTCCGAATGATATTCAGATTGCGAGAGAAATGGAGAAATCTCAAGATTCTCATGATGTCACTCATCCAGAAATTCAGATGAGTACAGTGGCACGAGCTTAGGTTAGGGGTCACATACTTTTTGTTCATTCAGATAGGATAGCTCTACACCTTTCTTTGGTTCTTTTTACTGTGTGTATACTAGGCAATTCTTTCTGTAGTAAGCACATTTCTTGTTGCTTGCTGCCTTTGTCAGCTATCCAAAGGATAGGTTTCTTTGTACCCATGCTGTGTATCCGCCTGCCAAATTTTGTTGATTTATACCAAAAAAGAAATCATACAGGAGTAAACTGTACATTTTCAGAAAAAAAAAAAAAAAAAAACTCGAGACTA] [+] EMBL AK059185 [GCTTTTTTGGTACGTACTTAACACTGGTTTCACCCTGACAACAGCAATAACCGAGTGGAGCAGTGTGTTATATTCTGTGATCTATACTGCTGTCCCAACTATCGTTGTTGCGATTCTCGACAAGGATCTGAGTAGGAGGACATTGTTGAAATACCCCCAACTCTATGGTGCAGGGCAGCGCGAGGAGAGTTACAACCTAAGGCTGTTCATTTTTGTCATGCTGGACTCCATCTGGCAGAGCCTCGCAGTTTTCTTTATCCCTTACCTTGCATACAGAAAGAGTACAATCGACGG TGCGAGTCTGGGAGACCTCTGGACACTAGCTGTTGTCATTCTTGTGGACATTCACCTTGCAATCGATGTCATCAGATGGAACTGGATCACGCACGCAGCAATATGGGGCAGTATAGTCGCAACGCTGATTTGTGTCATGGTCATAGACTCCATACCGATATTGCCTGGTTTCTGGGCAATATACAAGGTGATGGGAACTGGACTGTTTTGGGCATTGCTGCTCGCGGTAATTGTGGTTGGAATGATTCCTCATTTTGTCGCTAAGGCCATAAGGGAGCATTTCCTTCCGAATGATATTCAGATTGCGAGAGAAATGGAGAAATCTCAAGATTCTCATGATGTCACTCATCCAGAAATTCAGATGAGTACAGTGGCACGAGCTTAGGTTAGGGGTCACATACTTTTTGTTCATTCAGATAGGATAGCTCTACACCTTTCTTTGGTTCTTTTTACTGTGTGTATACTAGGCAATTCTTTCTGTAGTAAGCACATTTCTTGTTGCTTGCTGCCTTTGTCAGCTATCCAAAGGATAGGTTTCTTTGTACCCATGCTGTGTATCCGCCTGCCAAATTTTGTTGATTTAT ] [-] EMBL CB678412 [ ATACCCCCAACTCTATGGTGCAGGGCAGCGCGAGGAGAGTTACAACCTAAGGCTGTTCATTTTTGTCATGCTGGACTCCATCTGGCAGAGCCTCGCAGTTTTCTTTATCCCTTACCTTGCATACAGAAAGAGTACAATCGACGG TGCGAGTCTGGGAGACCTCTGGACACTAGCTGTTGTCATTCTTGTGAACATTCACCTTGCAATCGATGTCATCAGATGGAACTGGATCACGCACGCAGCAATATGGGGCAGTATAGTCGCAACGCTGATTTGTGTCATGGTCATAGACTCCATACCGATATTGCCTGGTTTCTGGGCAATATACAAGGTGATGGGAACTGGACTGTTTTGGGCATTGCTGCTCGCGGTAATTGTGGTTGGAATGATTCCTCATTTTGTCGCTAAGGCCATAAGGGAGCATTTCCTTCCGAATGATATTCAGATTGCGAGAGAAATGGAGAAATCTCAAGATTCTCATGATGTCACTCATCCAGAAATTCAGATGAGTACAGTGGCACGAGCTTAGGTTAGGGGTCACATACTTTTTGTTCATTCAGATAGGATAGCTCTACACCTTTCTTTGGTTCTTTTTACTGTGTGTATACTAGGCAATTCTTTCTGTAGTAAGCACATTTCTTGTTGCTTGCTGCCTTTGTCAGCTATCCAAAGGATAGGTTTCTTTGTACCCATGCTGTGTATCCGCCTGCCAAATTTTGTTGATTTATACCAAAAAGGAAATCATACAGGAGTAAACTGTCCATTTTCAG ] [-] EMBL CB629684 [ CCCCCAACTCTATGGTGCAGGGCAGCGCGAGGAGAGTTACAACCTAAGGCTGTTCATTTTTGTCATGCTGGACTCCATCTGGCAGAGCCTCGCAGTTTTCTTTATCCCTTACCTTGCATACAGAAAGAGTACAATCGACGG TGCGAGTCTGGGAGACCTCTGGACACTAGCTGTTGTCATTCTTGTGAACATTCACCTTGCAATGGATGTCATCAGATGGAACTGGATCACGCACGCAGCAATATGGGGCAGTATAGTCGCAACGCTGATTTGTGTCATGGTCATAGACTCCATACCGATATTGCCTGGTTTCTGGGCAATATACAAGGTGATGGGAACTGGACTGTTTTGGGCATTGCTGCTCGCGGTAATTGTGGTTGGAATGATTCCTCATTTTGTCGCTAAGGCCATAAGGGAGCATTTCCTTCCGAATGATATTCAGATTGCGAGAGAAATGGAGAAATCTCAAGATTCTCATGATGTCACTCATCCAGAAATTCAGATGAGTACAGTGGCACGAGCTTAGGTTAGGGGTCACATACTTTTTGTTCATTCAGATAGGATAGCTCTACACCTTTCTTTGGTTCTTTTTACTGTGTGTATACTAGGCAATTCTTTCTGTAGTAAGCACATTTCTTGCTGCTTGCTGCCTTTGTCAGCTATCCAAAGGATAGGTTTCTTTGTACCCATGCTGTGTATCCGCCTGCCAAATTTTGTTGATTTATACCAAAAAAGAAATCAGGCAGGAGTAAACTGTACATTTTCAGAAAAAAAAATAAAAA ] [-] EMBL CB649807 [ AGCGCGAGGAGAGTTACAACCTAAGGCTGTTCATTTTTGTCATGCTGGACTCCATCTGGCAGAGCCTCGCAGTTTTCTTTATCCCTTACCTTGCATACAGAAAGAGTACAATCGACGG TGCGAGTCTGGGAGACCTCTGGACACTAGCTGTTGTCATTCTTGTGAACATTCACCTTGCAATCGATGTCATCAGATGGAACTGGATCACGCACGCAGCAATATGGGGCAGTATAGTCGCAACGCTGATTTGTGTCATGGTCATAGACTCCATACCGATATTGCCTGGTTTCTGGGCAATATACAAGGTGATGGGAACTGGACTGTTTTGGGCATTGCTGCTCGCGGTAATTGTGGTTGGAATGATTCCTCATTTTGTCGCTAAGGCCATAAGGGAGCATTTCCTTCCGAATGATATTCAGATTGCGAGAGAAATGGAGAAATCTCAAGATTCTCATGATGTCACTCATCCAGAAATTCAGATGAGTACAGTGGCACGAGCTTAGGTTAGGGGTCACATACTTTTTGTTCATTCAGATAGGATAGCTCTACACCTTTCTTTGGTTCTTTTTACTGTGTGTATACTAGGCAATTCTTTCTGTAGTAAGCACATTTCTTGTTGCTTGCTGCCTTTGTCAGCTATCCAAAGGATAGGTTTCTTTGTACCCATGCTGTGTATCCGCCTGCCAAATTTTGTTGATTTATACCAAAAAAGAAATCGTACAGGAGTAAACTGTA ] [-] EMBL CA763213 [ ctacCCTCGCATACAGAAAGAGTACAATTCTCGGTTCCGAGTCTGGGAGACCCCTGGACACTACCTGTTGTCATTCTTGTGAACATTCCCCTTGCAATGGATGTCATCAGATGGAACTGGATCACGCACGCAGCAATATGGGGCAGTATAGTCGCAACGCTGATTTGTGTCATGGTCATAGACTCCATACCGATATTGCCTGGTTTCTGGGCAATATACAAGGTGATGGGAACTGGACTGTTTTGGGCATTGCTGCTCGCGGTAATTGTGGTTGGAATGATTCCTCATTTTGTCGCTAAGGCCATAAGGGAGCATTTCCTTCCGAATGATATTCAGATTGCGAGAGAAATGGAGAAATCTCAAGATTCTCATGATGTCACTCATCCAGAAATTCAGATGAGTACAGTGGCACGAGCTCAGGTTAGGGGTCACATACTTTTTGTTCATTCAGATAGGATAGCTCTACACCTTTCTTTGGTTCTTTTTACTGTGTGCATACTAGGCAATTCTTTCTGTAGTAAGCACATTTCTTGCTGCTTGCTGCCTTTGTCAGCTATCCAAAGGATAGGTTTCTTTGTACCCATGCTGTGTATCCGCCTGCCAAATTTTGTTGATTTATACCAAAAAAGAAATCATACAGGAGTAAACTGTACATTTTCAGAAAAAAAAAAAAta ] [-] EMBL CF325275 [ CTGTGTGTATACTAGGCAATTCTTTCTGTAGTAAGCACATTTCTTGTTGCTTGCTGCCTTTGTCAGCTATCCAAAGGATAGGTTTCTTTGTACCCATGCTGTGTATCCGCCTGCCAAATTTTGTTGATTTATACCAAAAAAGAAATCATACAGGAGTAAACTGTACATTTTCAGAAAAAAAAAAAAAAAAAAACTCGAGACTA] consensusID : consensus_10458#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 636 fasta sequence [GAGACAAGGGATAGGTGAGCCAGAGGACGAGACAAGGGGGTGAACATTCACCTTGCAATGGATGTCATCAGATGGAACTGGATCACGCACGCAGCAATATGGGGCAGTATAGTCGCAACGCTGATTTGTGTCATGGTCATAGACTCCATACCGATATTGCCTGGTTTCTGGGCAATATACAAGGTGATGGGAACTGGACTGTTTTGGGCATTGCTGCTCGCGGTAATTGTGGTTGGAATGATTCCTCATTTTGTCGCTAAGGCCATAAGGGAGCATTTCCTTCCGAATGATATTCAGATTGCGAGAGAAATGGAGAAATCTCAAGATTCTCATGATGTCACTCATCCAGAAATTTAGATGAGTACAGTGGCACGAGCTTAGGTTAGGGGTCACATACTTTTTGTTCATTCAGATAGGATAGCTCTACACCTTTCTTTGGTTCTTTTTACTGTGTGTATACTAGGCAATTCTTTCTGTAGTAAGCACATTTCTTGCTGCTTGCTGCCTTTGTCAGCTATCCAAAGGATAGGTTTCTTTGTACCCATGCTGTGTATCCGCCTGCCAAATTTTGTTGATTTATACCAAAAAAGAAATCATACAGGAGTAAACTGTACATTTTCAGAAAAAAAAAAAAAA] [-] EMBL CA763214 [GAGACAAGGGATAGGTGAGCCAGAGGACGAGACAAGGGGGTGAACATTCACCTTGCAATGGATGTCATCAGATGGAACTGGATCACGCACGCAGCAATATGGGGCAGTATAGTCGCAACGCTGATTTGTGTCATGGTCATAGACTCCATACCGATATTGCCTGGTTTCTGGGCAATATACAAGGTGATGGGAACTGGACTGTTTTGGGCATTGCTGCTCGCGGTAATTGTGGTTGGAATGATTCCTCATTTTGTCGCTAAGGCCATAAGGGAGCATTTCCTTCCGAATGATATTCAGATTGCGAGAGAAATGGAGAAATCTCAAGATTCTCATGATGTCACTCATCCAGAAATTTAGATGAGTACAGTGGCACGAGCTTAGGTTAGGGGTCACATACTTTTTGTTCATTCAGATAGGATAGCTCTACACCTTTCTTTGGTTCTTTTTACTGTGTGTATACTAGGCAATTCTTTCTGTAGTAAGCACATTTCTTGCTGCTTGCTGCCTTTGTCAGCTATCCAAAGGATAGGTTTCTTTGTACCCATGCTGTGTATCCGCCTGCCAAATTTTGTTGATTTATACCAAAAAAGAAATCATACAGGAGTAAACTGTACATTTTCAGAAAAAAAAAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_10458#0 GCTTTTTTGGTACGTACTTAACACTGGTTTCACCCTGACAACAGCAATAACCGAGTGGAG 60 consensus_10458#1 ------------------------------------------------------------ consensus_10458#0 CAGTGTGTTATATTCTGTGATCTATACTGCTGTCCCAACTATCGTTGTTGCGATTCTCGA 120 consensus_10458#1 ------------------------------------------------------------ consensus_10458#0 CAAGGATCTGAGTAGGAGGACATTGTTGAAATACCCCCAACTCTATGGTGCAGGGCAGCG 180 consensus_10458#1 ------------------------------------------------------------ consensus_10458#0 CGAGGAGAGTTACAACCTAAGGCTGTTCATTTTTGTCATGCTGGACTCCATCTGGCAGAG 240 consensus_10458#1 ------------------------------------------------------------ consensus_10458#0 CCTCGCAGTTTTCTTTATCCCTTACCTTGCATACAGAAAGAGTACAATCGACGGTGCGAG 300 consensus_10458#1 ---------------------------------------------------------GAG 3 *** consensus_10458#0 TCTGGGAGACCTCTGGACACTAGCTGTTGTCATTCTTGTGAACATTCACCTTGCAATCGA 360 consensus_10458#1 AC-AAGGGATAGGTGAGCCAGAGGACGAGACAAGGGGGTGAACATTCACCTTGCAATGGA 62 * * ** ** * ** * ** ******************** ** consensus_10458#0 TGTCATCAGATGGAACTGGATCACGCACGCAGCAATATGGGGCAGTATAGTCGCAACGCT 420 consensus_10458#1 TGTCATCAGATGGAACTGGATCACGCACGCAGCAATATGGGGCAGTATAGTCGCAACGCT 122 ************************************************************ consensus_10458#0 GATTTGTGTCATGGTCATAGACTCCATACCGATATTGCCTGGTTTCTGGGCAATATACAA 480 consensus_10458#1 GATTTGTGTCATGGTCATAGACTCCATACCGATATTGCCTGGTTTCTGGGCAATATACAA 182 ************************************************************ consensus_10458#0 GGTGATGGGAACTGGACTGTTTTGGGCATTGCTGCTCGCGGTAATTGTGGTTGGAATGAT 540 consensus_10458#1 GGTGATGGGAACTGGACTGTTTTGGGCATTGCTGCTCGCGGTAATTGTGGTTGGAATGAT 242 ************************************************************ consensus_10458#0 TCCTCATTTTGTCGCTAAGGCCATAAGGGAGCATTTCCTTCCGAATGATATTCAGATTGC 600 consensus_10458#1 TCCTCATTTTGTCGCTAAGGCCATAAGGGAGCATTTCCTTCCGAATGATATTCAGATTGC 302 ************************************************************ consensus_10458#0 GAGAGAAATGGAGAAATCTCAAGATTCTCATGATGTCACTCATCCAGAAATTCAGATGAG 660 consensus_10458#1 GAGAGAAATGGAGAAATCTCAAGATTCTCATGATGTCACTCATCCAGAAATTTAGATGAG 362 **************************************************** ******* consensus_10458#0 TACAGTGGCACGAGCTTAGGTTAGGGGTCACATACTTTTTGTTCATTCAGATAGGATAGC 720 consensus_10458#1 TACAGTGGCACGAGCTTAGGTTAGGGGTCACATACTTTTTGTTCATTCAGATAGGATAGC 422 ************************************************************ consensus_10458#0 TCTACACCTTTCTTTGGTTCTTTTTACTGTGTGTATACTAGGCAATTCTTTCTGTAGTAA 780 consensus_10458#1 TCTACACCTTTCTTTGGTTCTTTTTACTGTGTGTATACTAGGCAATTCTTTCTGTAGTAA 482 ************************************************************ consensus_10458#0 GCACATTTCTTGTTGCTTGCTGCCTTTGTCAGCTATCCAAAGGATAGGTTTCTTTGTACC 840 consensus_10458#1 GCACATTTCTTGCTGCTTGCTGCCTTTGTCAGCTATCCAAAGGATAGGTTTCTTTGTACC 542 ************ *********************************************** consensus_10458#0 CATGCTGTGTATCCGCCTGCCAAATTTTGTTGATTTATACCAAAAAAGAAATCATACAGG 900 consensus_10458#1 CATGCTGTGTATCCGCCTGCCAAATTTTGTTGATTTATACCAAAAAAGAAATCATACAGG 602 ************************************************************ consensus_10458#0 AGTAAACTGTACATTTTCAGAAAAAAAAAAAAAAAAAAACTCGAGACTA 949 consensus_10458#1 AGTAAACTGTACATTTTCAGAAAAAAAAAAAAAA--------------- 636 ********************************** |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||