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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_10463#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 6 consensus length = 1317 fasta sequence
[GTTTCCTTTCCCAGCGACGAAACTTCCTATCAAAACCGCGGTTTTATACCGGTTCTAGCCGCCAAGAACCCCAACCCCCGCCACCCGGCGAACGCGCCCTGCGAGAAAATTTGGTGTTTTGGGGCCTTTTTGAGGTGGGAATTCTGAGAATTCTGAGGGTTCTTGCCTGTTGCTCCGAGGATGAGGAACCTTCTCACGGATTCGTTTGAGCTCAGCAAAGTGGACCAAGCCCCTGCAAATGTTGATATCGAGCTAGGGTTGCAGGGTGGCATGTCCAGTTCTGCGCAGCCTGGCTTTGAAGGCTTCTTTGAACAGGTCAGGGAGATCGAGAAGCTACATGAAACATTGACAAAGTTACTGAAGGACCTTCAGAACTCAAATGAGGAGTCAAAAATTGTTACCAAGGCATCAGCCATGAAAGAGATTAAAAAGCGCATGGAGAAGGATGTCAATGAGGTGACAAAAACTGCACGTCTGGCAAAATCAAAAGTAGAGAAGTTGAATAAAGACAATGCTGCAAACAGAGAAAAACCAGGCTTCGGTAAGGGTTCGGGAGTGGACAGATCCCGGACTACAACCACTGTCTCATTGACAAAGAGGTTGAGAGAACGGATATCTGAGTTTCAGACATTAAGAGAGGCAATCCAGAAGGAATACCGGGATGTAGTGGAGCGGCGCGTTTTCACTGCCACTGGCGAGCGTGCTGACGAAGAGACAATTGACAAGCTGATAGAAACTGGGGACAGTGAGCAAATTTTTCAGAGAGCTATTCAGGAACAAGGCCGTGGAAGGGTGCTTGACACTCTCCAAGAAATTCAGGAACGGCATGATGCAGTGAAAGAGATAGAGCAGAAGCTTCTTGAGCTGCAACAGATT-TTCCTCGACATGTCCGTGTTGGTTGAGGCTCAAGGCGAGATCCTGGACAATATAGAGTCACAGGTTTCAGGTGCAGCTGAACATATTCAGACTGGAACAAACCTCCTCCAGAAAGCAAGATTTCTGCAGAAGAACACACGGAAATGGACCTGCATAGGGATTGTCATCCTCCTCATAATCATCCTCATCGTCGTCCTCTCCTTAAAG-CCGTGGTCTAAGTAGAAAAACCTGCATCT-CAGAAGCATCATGTTCAT-GTCGATTTTGGCTGGCAATGTTTATCTTTTGTGCAGTTCTACTTCTAGTTGTGTATATGCCACGGTGTGGTAGTGCGT-CATGTACATTCTCTGAAATTTTGGGTGCGAACTTATTCAGTTCTCTGTACTTCAAATAATGAACATGCAGCTTGATCATACATAATTTTGCTCAAAAACTTTCTATATA]
[+] EMBL AK100316 [GTTTCCTTTCCCAGCGACGAAACTTCCTATCAAAACCGCGGTTTTATACCGGTTCTAGCCGCCAAGAACCCCAACCCCCGCCACCCGGCGAACGCGCCCTGCGAGAAAATTTGGTGTTTTGGGGCCTTTTTGAGGTGGGAATTCTGAGAATTCTGAGGGTTCTTGCCTGTTGCTCCGAGGATGAGGAACCTTCTCACGGATTCGTTTGAGCTCAGCAAAGTGGACCAAGCCCCTGCAAATGTTGATATCGAGCTAGGGTTGCAGGGTGGCATGTCCAGTTCTGCGCAGCCTGGCTTTGAAGGCTTCTTTGAACAGGTCAGGGAGATCGAGAAGCTACATGAAACATTGACAAAGTTACTGAAGGACCTTCAGAACTCAAATGAGGAGTCAAAAATTGTTACCAAGGCATCAGCCATGAAAGAGATTAAAAAGCGCATGGAGAAGGATGTCAATGAGGTGACAAAAACTGCACGTCTGGCAAAATCAAAAGTAGAGAAGTTGAATAAAGACAATGCTGCAAACAGAGAAAAACCAGGCTTCGGTAAGGGTTCGGGAGTGGACAGATCCCGGACTACAACCACTGTCTCATTGACAAAGAGGTTGAGAGAACGGATATCTGAGTTTCAGACATTAAGAGAGGCAATCCAGAAGGAATACCGGGATGTAGTGGAGCGGCGCGTTTTCACTGCCACTGGCGAGCGTGCTGACGAAGAGACAATTGACAAGCTGATAGAAACTGGGGACAGTGAGCAAATTTTTCAGAGAGCTATTCAGGAACAAGGCCGTGGAAGGGTGCTTGACACTCTCCAAGAAATTCAGGAACGGCATGATGCAGTGAAAGAGATAGAGCAGAAGCTTCTTGAGCTGCAACAGATT TTCCTCGACATGTCCGTGTTGGTTGAGGCTCAAGGCGAGATCCTGGACAATATAGAGTCACAGGTTTCAGGTGCAGCTGAACATATTCAGACTGGAACAAACCTCCTCCAGAAAGCAAGATTTCTGCAGAAGAACACACGGAAATGGACCTGCATAGGGATTGTCATCCTCCTCATAATCATCCTCATCGTCGTCCTCTCCTTAAAG CCGTGGTCTAAGTAGAAAAACCTGCATCT CAGAAGCATCATGTTCAT GTCGATTTTGGCTGGCAATGTTTATCTTTTGTGCAGTTCTACTTCTAGTTGTGTATATGCCACGGTGTGGTAGTGCGT CATGTACATTCTCTGAAATTTTGGGTGCGAACTTATTCAGTTCTCTGTACTTCAAATAATGAACATGCAGCTTGATCATACATAATTTTGCTCA ]
[+] EMBL CA767571 [ CCGGGATGTAGTGGAGCGGCGCGTTTTCACTGTCACTGGCGAGCGTGCTGACGAAGAGACAATTGACAAGCTGATAGAAACTGGGGACAGTGAGCAAATTTTTCAGAGAGCTATTCAGGAACAAGGCCGTGGAAGGGTGCTTGACACTCTCCAAGACATTCAGGAACGGCATGATGCAGTGAAAGAGATAGAGCAGAAGCTTCTTGAGCTGCAACAGATT TTCCTCGACATGTCCGTGTTGGTTGAGGCTCAAGGCGAGATCCTGGACAATATAGAGTCACAGGTTTCAGGTGCAGCTGAACATATTCAGACTGGAACAAACCTCCTCCAGAAAGCAAGATTTCTGCAGAAGAACACACGGAAATGGACCTGCATAGGGATTGTCATCCTCCTCATAATCATCCTCATCGTCGTCCTCTCCTTAAAG CCGTGGTCTAAGTAGAAAAACCTGCATCT CAGAAGCATCATGTTCAT GTCGATTTTGGCTGGCAATGTTTATCTTTTGTGCAGTTCTACTTCTAGTTGTGTATATGCCACGGTGTGGTAGTGCGT CATGTACATTCTCTGAAATTTTGGGTGCGAACTTATTCAGTTCTCTGTACTTCAAATAATGAACATGCAGCTTGATCA ]
[+] EMBL BM418744 [ gcCTGATAGAAACTGGGGACAGTGAGCAAATTTTTCAGAGAGCTATTCAGGAACAA GCCGTGGAAGGGTGCTTGACACTCTCCAAGAAATTCAGGAACGGCATGATGCAGTGAAAGAGATAGAGCAGAAGCTTCTTGAGCTGCAACAGATTGTTCCTCGACATGTCCGTGTTGGTTGAGGCTCAAGGCGAGATCCTGGACAATATAGAGTCACAGGTTTCAGGTGCAGCTGAACATATTCAGACTGGAAC AACCTCCTCCAGAAAGCAAGATTTCTGCAGAAGAACACACGGAAATGGACCTGCATAGGGATTGTCATCCTCCTCATAATCATCCTCATCGTCGTCCTCTCCTTAAAG CCGTGGTCTAAGTAGAAAAACCTGCATCT CAGAAGCATCATGTTCAT GTCGATTTTGGCTGGCAATGTTTATCTTTTGTGCAGTTCTACTTCTAGTTGTGTATATGCCACGGTGTGGTAGTGCGT CATGTACATTCTCTGAAATTTTGGGTGCGAACTTATTCAGTTCTCTGTACTTCAAATAATGAACATGCAGCTTGATCATACATAATTTTGCTCAAAA ]
[+] EMBL BM419236 [ TTTTCAGAGAGCTATTCAGGAACAA GCCGTGGAAGGGTGCTTGACACTCTCCAAGAAATTCAGGAACGGCATGATGCAGTGAAAGAGATAGAGCAGAAGCTTCTTGAGCTGCAACAGATT TTCCTCGACATGTCCGTGTTGGTTGAGGCTCAAGGCGAGATCCTGGACAATATAGAGTCACAGGTTTCAGGTGCAGCTGAACATATTCAGACTGGAACAAACCTCCTCCAGAAAGCAAGATTTCTGCAGAAGAACACACGGAAATGGACCTGCATAGGGATTGTCATCCTCCTCATAATCATCCTCATCGTCGTCCTCTCCTTAAAG CCGTGGTCTAAGTAGAAAAACCTGCATCT CAGAAGCATCATGTTCATCGTCGATTTTGGCTGGCAATGTTTATCTTTTGTGCAGTTCTACTTCTAGTTGTGTATATGCCCCGGTGTGGTAGTGCGT CATGTACATTCTCTGAAATTTTGGGTGCGAACTTATTCAGTTCTCTGTACTTCAAATAATGAACATCCCGCTTGATCATACATAATTTTGCTCAAAA ]
[+] EMBL BQ908966 [ TCACAGGTTTCAGGTGCAGCTGAACATATTCAGACTGGAACAAACCTCCTCCAGAAAGCAAGATTTCTGCAGAAGAACACACGGAAATGGACCTGCATAGGGATTGTCATCCTCCTCATAATCATCCTCATCGTCGTCCTCTCCTTAAAGCCCGTGGTCTAAGTAGAAAAACCTGCATCT CAGAAGCATCATGTTCAT GTCGATTTTGGCTGGCAATGTTTATCTTTTGTGCAGTTCTACTTCTAGTTGTGTATATGCCCCGGTGTGGTAGTGCGT CATGTACATTCTCTGAAATTTTGGGTGCGAACTTATTCAGTTCTCTGTACTTCAAATAATGAACATGCAGCTTGATCATAAAAAAaaaa ]
[+] EMBL BI807809 [ G CCGTGGTCTAAGTAG AAAACCTGCATCTGCAGAAGCATCATGTTCAT GTCGATTTTGGCTGGCAATGTTTATCTTTTGTGCAGTTCTACTTCTAGTTGTGTATATGCCACGGTGTGGTAGTGCGTGCATGTACATTCTCTGAAATTTTGGGTGCGAACTTATTCAGTTCTCTGTACTTCAAATAATGAACATGCAGCTTGATCATACATAATTTTGCTCATAAACTTTCTATATA]
consensusID : consensus_10463#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 73 fasta sequence
[GGTTTTTTTTTTTTTTTTTTTGTATGATCAAGCTGCATGTTCATTATTTGAAGTACAGAGAAGTGAATAAGTT]
[+] EMBL CF325512 [GGTTTTTTTTTTTTTTTTTTTGTATGATCAAGCTGCATGTTCATTATTTGAAGTACAGAGAAGTGAATAAGTT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_10463#0 GTTTCCTTTCCCAGCGACGAAACTTCCTATCAAAACCGCGGTTTTATACCGGTTCTAGCC 60
consensus_10463#1 ------------------------------------------------------------
consensus_10463#0 GCCAAGAACCCCAACCCCCGCCACCCGGCGAACGCGCCCTGCGAGAAAATTTGGTGTTTT 120
consensus_10463#1 ------------------------------------------------------------
consensus_10463#0 GGGGCCTTTTTGAGGTGGGAATTCTGAGAATTCTGAGGGTTCTTGCCTGTTGCTCCGAGG 180
consensus_10463#1 -------------------------------------GGTTTTTTTTTTTTTTTTTTTGT 23
**** ** * ** * *
consensus_10463#0 ATGAGGAACCTTCTCACGGATTCGTTTGAGCTCAGCAAAGTGGACCAAGCCCCTGCAAAT 240
consensus_10463#1 ATGATCAAGCTGCATGTTCATTATTTGAAGTACAGAGAAGTGAAT-AAGTT--------- 73
**** ** ** * *** ** ** *** ***** * ***
consensus_10463#0 GTTGATATCGAGCTAGGGTTGCAGGGTGGCATGTCCAGTTCTGCGCAGCCTGGCTTTGAA 300
consensus_10463#1 ------------------------------------------------------------
consensus_10463#0 GGCTTCTTTGAACAGGTCAGGGAGATCGAGAAGCTACATGAAACATTGACAAAGTTACTG 360
consensus_10463#1 ------------------------------------------------------------
consensus_10463#0 AAGGACCTTCAGAACTCAAATGAGGAGTCAAAAATTGTTACCAAGGCATCAGCCATGAAA 420
consensus_10463#1 ------------------------------------------------------------
consensus_10463#0 GAGATTAAAAAGCGCATGGAGAAGGATGTCAATGAGGTGACAAAAACTGCACGTCTGGCA 480
consensus_10463#1 ------------------------------------------------------------
consensus_10463#0 AAATCAAAAGTAGAGAAGTTGAATAAAGACAATGCTGCAAACAGAGAAAAACCAGGCTTC 540
consensus_10463#1 ------------------------------------------------------------
consensus_10463#0 GGTAAGGGTTCGGGAGTGGACAGATCCCGGACTACAACCACTGTCTCATTGACAAAGAGG 600
consensus_10463#1 ------------------------------------------------------------
consensus_10463#0 TTGAGAGAACGGATATCTGAGTTTCAGACATTAAGAGAGGCAATCCAGAAGGAATACCGG 660
consensus_10463#1 ------------------------------------------------------------
consensus_10463#0 GATGTAGTGGAGCGGCGCGTTTTCACTGCCACTGGCGAGCGTGCTGACGAAGAGACAATT 720
consensus_10463#1 ------------------------------------------------------------
consensus_10463#0 GACAAGCTGATAGAAACTGGGGACAGTGAGCAAATTTTTCAGAGAGCTATTCAGGAACAA 780
consensus_10463#1 ------------------------------------------------------------
consensus_10463#0 GGCCGTGGAAGGGTGCTTGACACTCTCCAAGAAATTCAGGAACGGCATGATGCAGTGAAA 840
consensus_10463#1 ------------------------------------------------------------
consensus_10463#0 GAGATAGAGCAGAAGCTTCTTGAGCTGCAACAGATTTTCCTCGACATGTCCGTGTTGGTT 900
consensus_10463#1 ------------------------------------------------------------
consensus_10463#0 GAGGCTCAAGGCGAGATCCTGGACAATATAGAGTCACAGGTTTCAGGTGCAGCTGAACAT 960
consensus_10463#1 ------------------------------------------------------------
consensus_10463#0 ATTCAGACTGGAACAAACCTCCTCCAGAAAGCAAGATTTCTGCAGAAGAACACACGGAAA 1020
consensus_10463#1 ------------------------------------------------------------
consensus_10463#0 TGGACCTGCATAGGGATTGTCATCCTCCTCATAATCATCCTCATCGTCGTCCTCTCCTTA 1080
consensus_10463#1 ------------------------------------------------------------
consensus_10463#0 AAGCCGTGGTCTAAGTAGAAAAACCTGCATCTCAGAAGCATCATGTTCATGTCGATTTTG 1140
consensus_10463#1 ------------------------------------------------------------
consensus_10463#0 GCTGGCAATGTTTATCTTTTGTGCAGTTCTACTTCTAGTTGTGTATATGCCACGGTGTGG 1200
consensus_10463#1 ------------------------------------------------------------
consensus_10463#0 TAGTGCGTCATGTACATTCTCTGAAATTTTGGGTGCGAACTTATTCAGTTCTCTGTACTT 1260
consensus_10463#1 ------------------------------------------------------------
consensus_10463#0 CAAATAATGAACATGCAGCTTGATCATACATAATTTTGCTCAAAAACTTTCTATATA 1317
consensus_10463#1 ---------------------------------------------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||