These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_10467#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 6 consensus length = 643 fasta sequence [GGAGACCACCACCACCACCTCACCTCACCCACCTCTGCTTCTTCTTCTTCTTCTTCCCCGTGGTGTGGTGTGGTGGTGAATTGTTGTTCTGTTCCCTTCATTTTTCGTTGATTCGTGAGCGCGGCGACGTACGTACGGTGGTAAGCATCGTCGTGGATTCGTCTCCGGCGACGGGGGGGAGTGGGTAGGGTAGGGATGTTCGTCAAGGACTGGGACTGAGGTGATCGGCTAAATGTACCGCCAGAACGAGTCGGCCCTCTCCTGCTTCTACCTCTTCCTCCTCTGGTTCTTCTTCTTGAAATAGACTCCACGCCGCGCCAATTCCCAGCCCGAGCGGGAGCCAGCTGCTCAATCCGTCGTTGAGATTGGTTGCGGTTTGCTCTAGCTTGTGAACTCGGCGGAGATTTTTGGTTTTTTGTTTTGGTTTTGGGTTTGGTTGGGTGAGTGGTCGATCGATCGGAAGGTGTTCGATCGATTGCTTGCCTGCTTTGTGATGGAGTTGGATCTGAACAACGTGGCGGAAGGGGTGGTGGAGAAGCATGAGACGGCGGCGAGGAGCGACTCCGGCACGTCGGAGTCGTCGGTGCTCAACGGGGAGGCGTCTGGCGCGGCCATCGCGCCGGCGGAAGAGGGGTCGAGCTCG] [+] EMBL OSR3354A [GGAGACCACCACCACCACCTCACCTCACCCACCTCTGCTTCTTCTTCTTCTTCTTCCCCGTGGTGTGGTGTGGTGGTGAATTGTTGTTCTGTTCCCTTCATTTTTCGTTGATTCGTGAGCGCGGCGACGTACGTACGGTGGTAAGCATCGTCGTGGATTCGTCTCCGGCGACGGGGGGGAGTGGGTAGGGTAGGGATGTTCGTCAAGGACTGGGACTGAGGTGATCGGCTAAATGTACCGCCAGAACGAGTCGGCCCTCTCCTGCTTCTACCTCTTCCTCCTCTGGTTCTTCTTCTTGAAATAGACTTCACGC ] [+] EMBL OSR25271A [GGAGACCACCACCACCACCTCACCTCACCCACCTCTGCTTCTTCTTCTTCTTCTTCCCCGTGGTGTGGTGTGGTGGTGAATTGTTGTTCTGTTCCCTTCATTTTTCGTTGATTCGTGAGCGCGGCGACGTACGTACGGTGGTAAGCATCGTCGTGGATTCGTCTCCGGCGACGGGGGGGAGTGGGTAGGGTAGGGATGTTCGTCAAGGACTGGGACTGAGGTGATCGGCTAAATGTACCGCCAGAACGAGTCGGCCCTCTCCTGCTTCTACCTNTTCCTCCTCTGGTTCTTCTTCTTGAAATAGA ] [+] EMBL CB639738 [ GGACTGAGGTGATCGGCTAAATGTACCGCCAGAACGAGTCGGCCCTCTCCTGCTTCTACCTCTTCCTCCTCTGGTTCTTCTTCTTGAAATAGACTCCACGCCGCGCCAATTCCCAGCCCGAGCGGGAGCCAGCTGCTCAATCCGTCGTTGAGATTGGTTGCGGTTTGCTCTAGCTTGTGAACTCGGCGGAGATTTTTGGTTTTTTGTTTTGGTTTTGGGTTTGGTTGGGTGAGTGGTCNATCGATCGGAAGGTGTTCGATCGATTGCTTGCCTGCTTTGTGATGGAGTTGGATCTGAACAACGTGGCGGAA ] [+] EMBL AU222717 [ ACTGAGGTGATCGGCTAAATGTACCGCCAGAACGAGTCGGCCCTCTCCTGCTTCTACCTCTTCCTCCTCTGGTTCTTCTTCTTGAAATAGACTCCACGCCGCGCCAATTCCCAGCCCGAGCGGGAGCCAGCTGCTCAATCCGTCGTTGAGATTGGTTGCGGTTTGCTCTAGCTTGTGAACTCGGCGGAGATTTTTGGTTTTTTGTTTTGGTTTTGGGTTTGGTTGGGTGAGTGGTCGATCGATCGGAAGGTGTTCGATCGATTGCTTGCCTGCTTTGTGATGGAGTTGGATCTGAACAACGTGGCGGAAGGGGTGGTGGAGAAGCATGAGACGGCGGCGAGGAGCGACTCCGGCACGTCGGAGTCGTCGGTGCTCAACGGGGAGGCGTCTGGCGCGGCCATCGCGCCGGCGGAAGAGGGGTCGAGCTCG] [+] EMBL CB640581 [ CTCCTGCTTCTACCTCTTCCTCCTCTGGTTCTTCTTCTTGAAATAGACTCCACGCCGCGCCAATTCCCAGCCCGAGCGGGAGCCAGCTGCTCAATCCGTCGTTGAGATTGGTTGCGGTTTGCTCTAGCTTGTGAACTCGGCGGAGATTTTTGGTTTTTTGTTTTGGTTTTGGGTTTGGTTGGGTGAGTGGTCGATCGATCGGAAGGTGTTCGATCGATTGCTTGCCTGCTTTGTGATGGA ] [+] EMBL CB640537 [ CTCCTGCTTCTACCTCTTCCTCCTCTGGTTCTTCTTCTTGAAATAGACTCCACGCCGCGCCAATTCCCAGCCCGAGCGGGAGCCAGCTGCTCAATCCGTCGTTGAGATTGGTTGCGGTTTGCTCTAGCTTGTGAACTCGGCGGAGATTTTTGGTTTTTTGTTTTGGTTTTGGGTTTGTTTTTGTGAGTGGTCGATCGATCGGAAGGTGTTCGATCGATT ] consensusID : consensus_10467#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 323 fasta sequence [CTCGTGCCGAATTCCGCACGACGTTGGGTGAGTGGTCNATCGATCGGAAAGTGTTCGATCGATTGCTTGCCTGCTTTGTGATGGAATTGGATCTGAACAACCTGGCNGAAAGGGTGGTGGANAACNTGAAACGCGGCGAAGACNACTCCCGCACNTCTGANTCGTCGGTGCTCNACNGGGAAGCGTCTGGCGCGGCCATCCCGCCCGCGGAANAAGGGTCTAACTCCACACCNCCGTCNCCGCCGCCGCCTCCCGCGGCGGTGCTCNANTTCNGCATCCNGANGANCTCCGCGTCCGCGTCTGGCGAAAACCACCCCCACCAC] [+] EMBL BE228373 [CTCGTGCCGAATTCCGCACGACGTTGGGTGAGTGGTCNATCGATCGGAAAGTGTTCGATCGATTGCTTGCCTGCTTTGTGATGGAATTGGATCTGAACAACCTGGCNGAAAGGGTGGTGGANAACNTGAAACGCGGCGAAGACNACTCCCGCACNTCTGANTCGTCGGTGCTCNACNGGGAAGCGTCTGGCGCGGCCATCCCGCCCGCGGAANAAGGGTCTAACTCCACACCNCCGTCNCCGCCGCCGCCTCCCGCGGCGGTGCTCNANTTCNGCATCCNGANGANCTCCGCGTCCGCGTCTGGCGAAAACCACCCCCACCAC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_10467#0 GGAGACCACCACCACCACCTCACCTCACCCACCTCTGCTTCTTCTTCTTCTTCTTCCCCG 60 consensus_10467#1 ------------------------------------------------------------ consensus_10467#0 TGGTGTGGTGTGGTGGTGAATTGTTGTTCTGTTCCCTTCATTTTTCGTTGATTCGTGAGC 120 consensus_10467#1 ------------------------------------------------------------ consensus_10467#0 GCGGCGACGTACGTACGGTGGTAAGCATCGTCGTGGATTCGTCTCCGGCGACGGGGGGGA 180 consensus_10467#1 ------------------------------------------------------------ consensus_10467#0 GTGGGTAGGGTAGGGATGTTCGTCAAGGACTGGGACTGAGGTGATCGGCTAAATGTACCG 240 consensus_10467#1 ------------------------------------------------------------ consensus_10467#0 CCAGAACGAGTCGGCCCTCTCCTGCTTCTACCTCTTCCTCCTCTGGTTCTTCTTCTTGAA 300 consensus_10467#1 ------------------------------------------------------------ consensus_10467#0 ATAGACTCCACGCCGCGCCAATTCCCAGCCCGAGCGGGAGCCAGCTGCTCAATCCGTCGT 360 consensus_10467#1 ------------------------------------------------------------ consensus_10467#0 TGAGATTGGTTGCGGTTTGCTCTAGCTTGTGAACTCGGCGGAGATTTTTGGTTTTTTGTT 420 consensus_10467#1 ------------------------------------------------------CTCGTG 6 * ** consensus_10467#0 TTGG-TTTTGGGTTTGGTTGGGTGAGTGGTCGATCGATCGGAAGGTGTTCGATCGATTGC 479 consensus_10467#1 CCGAATTCCGCACGACGTTGGGTGAGTGGTCNATCGATCGGAAAGTGTTCGATCGATTGC 66 * ** * *************** *********** **************** consensus_10467#0 TTGCCTGCTTTGTGATGGAGTTGGATCTGAACAACGTGGCGGAAGGGGTGGTGGAGAAGC 539 consensus_10467#1 TTGCCTGCTTTGTGATGGAATTGGATCTGAACAACCTGGCNGAAAGGGTGGTGGANAA-C 125 ******************* *************** **** *** ********** ** * consensus_10467#0 ATGAGACGGCGGCGAGGAGCGACTCCGGCACGTCGGAGTCGTCGGTGCTCAACGGGGAGG 599 consensus_10467#1 NTGAAACG-CGGCGAAGA-CNACTCCCGCACNTCTGANTCGTCGGTGCTCNACNGGGAAG 183 *** *** ****** ** * ***** **** ** ** ************ ** **** * consensus_10467#0 CGTCTGGCGCGGCCATCGCGCCGGCGGAAGAGGGGTCGAGCTCG---------------- 643 consensus_10467#1 CGTCTGGCGCGGCCATCCCGCCCGCGGAANAAGGGTCTAACTCCACACCNCCGTCNCCGC 243 ***************** **** ****** * ***** * *** consensus_10467#0 ------------------------------------------------------------ consensus_10467#1 CGCCGCCTCCCGCGGCGGTGCTCNANTTCNGCATCCNGANGANCTCCGCGTCCGCGTCTG 303 consensus_10467#0 -------------------- consensus_10467#1 GCGAAAACCACCCCCACCAC 323 |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||