cluster # 10477

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Oryza sativa
cluster # 10477 cluster # 10477 Sequences # 7 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_10477#0 length = 516 sequences # 6

consensus_10477#1 length = 358 sequences # 1

consensusID : consensus_10477#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 6
consensus length = 516
fasta sequence

                              [TTGCCAAGAAGCCTTCTTCTTCTAGCTGCCACTTTCATCTTGCTTCAACATACCACCAATCACCAAGAGATTTGTTCTTTGATCTTTCTCTGCCAGTGCTGACATGGGCAAGGTGTGCTGCACCGAGGAGTCCGAAGAGGAGGCCGCATTCAACCTCATGGGGCTTCTCGTCGCTGCGATCATCGCCTTGGTGCTGATGCTCATCTGCACACCGCCACGGCGGCGCTCAGTCACCATCTACCCTTGCTGCTGAGGTGGAGGAGTACCTGCAGGACTGTGAGTCCTCTGATGGGAGAAGCTTGATTGCTTCTCTGAAGAATCAAAGATGTGCAGGGTGAAGGTTGTTGGAGAAAGCAGGAAGGCAAGGCATTGGCTCCTGA-TTTTTC-AAGTTAAATAATTGCTT-AATTGTAATGCATCCTATTGTAAGTCATGTTTATTGGTATAATAGTCTCTTCATCTTTAA---CAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]

[+] EMBL C27952               [TTGCCAAGAAGCCTTCTTCTTCTAGCTGCCACTTTCATCTTGCTTCAACATACCACCAATCACCAAGAGATTTGTTCTTTGATCTTTCTCTGCCAGTGCTGACATGGGCAAGGTGTGCTGCACCGAGGAGTCCGAAGAGGAGGCCGCATTCAACCTCATGGGGCTTCTCGTCGCTGCGATCATCGCCTTGGTGCTGATGCTCATCTGCACACCGCCACGG GCTGCTCAGTCACCATCTACCCTTGCTGCTGAGGTGGAGGAGTACCTGCAGGACTGTGAGTCCTCTGATGGGAGAAGCTTGATTGCTTCTCTGAAGAATCAAAGATGTGCAGGGTGAAGGTTGTTGGAGAAAGCAGGAAGGCAAGGCATTGGCTCCTGATTTTTTCAAAGTTAAATAATTGCTTAAATTGTAATGCATCCTATTGTAAGGCATGTTTA                                                                                   ]
[+] EMBL C74658               [  GCCAAGAAGCCTTCTTCTTCTAGCTGCCACTTTCATCTTGCTTCAACATACCACCAATCACCAAGAGATTTGTTCTTTGATCTTTCTCTGCCAGTGCTGACATGGGCAAGGTGTGCTGCACCGAGGAGTCCGAAGAGGAGGCCGCATTCAACCTCATGGGGCTTCTCGTCGCTGCGATCATCGCCTTGGTGCTGATGCTCATCTGCACACCGCCACGGCGGCGCTCAGTCACCATCTACCCTTGCTGCTGAGGTGGAGGAGTACCTGCAGGACTGTGAGTCCTCTGATGGGAGAAGCTTGATTGCTTCTCTGAAGAATC AAGATGTGCAGGGTGAAGGTTGTTGGAG AAGCAGG AGGC AGG ATTNGCTCCTGA  TTTTC  AGTT AATAATTNCTaa                                                                                                                    ]
[+] EMBL CA754951             [             TTCTTCTTCTAGCTGCCACTTTCATCTTGCTTCAACATACCACCAATCACCAAGAGATTTGTTCTTTGATCTTTCTCTGCCAGTGCTGACATGGGCAAGGTGTGCTGCACCGAGGAGTCCGAAGAGGAGGCCGCATTCAACCTCATGGGGCTTCTCGTCGCTGCGATCATCGCCTTGGTGCTGATGCTCATCTGCACACCGCCACGGCGGCGCTCAGTCACCATCTACCCTTGCTGCTGAGGTGGAGGAGTACCTGCAGGACTGTGAGTCCTCTGATGGGAGAAGCTTGATTGCTTCTCTGAAGAATCANAGATGTGCAGGGTGAAGGTTGTTGGAGAAAGCAGGAAGGCAAGGCATTGGCTCCTGA TTTTTC AAGTTAAATAATTGCTT AATTGTAATGCATCCTATTGTAAGTCATGTTTATTGGTATAATAGTCTCTTCATCTTTAA   NAAAAAA                                              ]
[+] EMBL CF297938             [                           GCCACTTTCATCTTGCTTCAACATACCACCAATCACCAAGAGATTTGTTCTTTGATCTTTCTCT TTAGTGCTGACATGGGCAA GTGTGCTGCACCGA GAGTCC AA ATG TGTCTCATTCAACCTCATGGGGCTTCTCGTCGCTGCGATCATCGCCTTGGTGCTGATGCTCATCTGCACACCGCCACGGCGGCGCTCAGTCACCATCTACCCTTGCTGCTGAGGTGGAGGAGTACCTGCAGGACTGTGAGTCCTCTGATGGGAGAAGCTTGATTGCTTCTCTGAAGAATCAAAGATGTGCAGGGTGAAGGTTGTTGGAGAAAGCAGGAAGGCAAGGCATTGGCTCCTGA TTTTTC AAGTTAAATAATTGCTT AATTGTAATGCATCCTATTGTAAGTCATGTTTATTGGTATAATA                                                                        ]
[+] EMBL AU183148             [                                                                                               GTGNTGACATGGGCAAGGTGTGCTGCNCCGAGGAGTCCGAAGAGGAGGCCGCATTCAACCTCATGGGGCTTCTCGTCGCTGCGATCATCGCCTTGGTGCTGATGCTCATNTGCACACCGCCACGGCGGCGCTCAGTCACCATCTACCCTTGCTGNTGAGGTGGAGGAGTACCTGCAGGACTGTGAGTCCTNTGATGGGAGAAGCTTGATTGCTTCTNTGAAGAATCAAANATGTGCAGGGTGAAGGTTGTTGGAGAAAGCAGGAAGGCAAGGCATTGGCTCCTNA TTTTTC AAGTTAAATAATTGCTT AATTGTAATGCATCCTATTGTAAGTCATGTTTATTGGTATAATAGTCTCTTCATCTTTTACCCCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]
[+] EMBL AU092776             [                                                                                                                                                                                                                                                         CTGAGGTGGAGGAGTACCTGCAGGACTGTGAGTCCTCTGATGGGAGAAGCTTGATTGCTTCTCTGAAGAATCAAAGATGTGCAGGGTGAAGGTTGTTGGAGAAAGCNGGAAGGCAAGGCATTGGCTCCTGA TTTTTC AAGTTAAATAATTGCTT AATTGTAATGCNTCCTATTGTAAGTCATGTTTATTGGTATAATAGTCTCTTCATCTTTAG   CCTGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA       ]




>consensus_10477#0
TTGCCAAGAAGCCTTCTTCTTCTAGCTGCCACTTTCATCTTGCTTCAACATACCACCAAT
CACCAAGAGATTTGTTCTTTGATCTTTCTCTGCCAGTGCTGACATGGGCAAGGTGTGCTG
CACCGAGGAGTCCGAAGAGGAGGCCGCATTCAACCTCATGGGGCTTCTCGTCGCTGCGAT
CATCGCCTTGGTGCTGATGCTCATCTGCACACCGCCACGGCGGCGCTCAGTCACCATCTA
CCCTTGCTGCTGAGGTGGAGGAGTACCTGCAGGACTGTGAGTCCTCTGATGGGAGAAGCT
TGATTGCTTCTCTGAAGAATCAAAGATGTGCAGGGTGAAGGTTGTTGGAGAAAGCAGGAA
GGCAAGGCATTGGCTCCTGATTTTTCAAGTTAAATAATTGCTTAATTGTAATGCATCCTA
TTGTAAGTCATGTTTATTGGTATAATAGTCTCTTCATCTTTAACAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

consensusID : consensus_10477#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 358
fasta sequence

                              [TTACCCTTGCTGTTGAGGTGGAGGAGTACCTGCAGGACTGTGAGTCCTTTGATGGGAGAAGCTTGATTGCTTTTTTGAAGAATCAAAAATGTGCAGGGTGAAGGTTGTTGGAGAAAGCAGGAAGGCAAGGCATTGGCTCCTGATTTTTCAAGTTAAATAATTGCTTAATTGTAATGCATCCTATTGTAAGTCATGTTTATTGGTATAATAGTCTCTTCATCTTTAGCCTGAATTGATAGCTTTGGAAATATATAAATGCTTGTCAAATCTGTTAAATGTATGATATGACTTGCTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACACTGTCATGCCATTACGTAGCGTATC]

[-] EMBL CF297937             [TTACCCTTGCTGTTGAGGTGGAGGAGTACCTGCAGGACTGTGAGTCCTTTGATGGGAGAAGCTTGATTGCTTTTTTGAAGAATCAAAAATGTGCAGGGTGAAGGTTGTTGGAGAAAGCAGGAAGGCAAGGCATTGGCTCCTGATTTTTCAAGTTAAATAATTGCTTAATTGTAATGCATCCTATTGTAAGTCATGTTTATTGGTATAATAGTCTCTTCATCTTTAGCCTGAATTGATAGCTTTGGAAATATATAAATGCTTGTCAAATCTGTTAAATGTATGATATGACTTGCTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACACTGTCATGCCATTACGTAGCGTATC]




>consensus_10477#1
TTACCCTTGCTGTTGAGGTGGAGGAGTACCTGCAGGACTGTGAGTCCTTTGATGGGAGAA
GCTTGATTGCTTTTTTGAAGAATCAAAAATGTGCAGGGTGAAGGTTGTTGGAGAAAGCAG
GAAGGCAAGGCATTGGCTCCTGATTTTTCAAGTTAAATAATTGCTTAATTGTAATGCATC
CTATTGTAAGTCATGTTTATTGGTATAATAGTCTCTTCATCTTTAGCCTGAATTGATAGC
TTTGGAAATATATAAATGCTTGTCAAATCTGTTAAATGTATGATATGACTTGCTAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACACTGTCATGCCATTACGTAGCGTATC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_10477#0      TTGCCAAGAAGCCTTCTTCTTCTAGCTGCCACTTTCATCTTGCTTCAACATACCACCAAT 60
consensus_10477#1      ------------------------------------------------------------
                                                                                   

consensus_10477#0      CACCAAGAGATTTGTTCTTTGATCTTTCTCTGCCAGTGCTGACATGGGCAAGGTGTGCTG 120
consensus_10477#1      ------------------------------------------------------------
                                                                                   

consensus_10477#0      CACCGAGGAGTCCGAAGAGGAGGCCGCATTCAACCTCATGGGGCTTCTCGTCGCTGCGAT 180
consensus_10477#1      ------------------------------------------------------------
                                                                                   

consensus_10477#0      CATCGCCTTGGTGCTGATGCTCATCTGCACACCGCCACGGCGGCGCTCAGTCACCATCTA 240
consensus_10477#1      ---------------------------------------------------------TTA 3
                                                                                 **

consensus_10477#0      CCCTTGCTGCTGAGGTGGAGGAGTACCTGCAGGACTGTGAGTCCTCTGATGGGAGAAGCT 300
consensus_10477#1      CCCTTGCTGTTGAGGTGGAGGAGTACCTGCAGGACTGTGAGTCCTTTGATGGGAGAAGCT 63
                       ********* *********************************** **************

consensus_10477#0      TGATTGCTTCTCTGAAGAATCAAAGATGTGCAGGGTGAAGGTTGTTGGAGAAAGCAGGAA 360
consensus_10477#1      TGATTGCTTTTTTGAAGAATCAAAAATGTGCAGGGTGAAGGTTGTTGGAGAAAGCAGGAA 123
                       ********* * ************ ***********************************

consensus_10477#0      GGCAAGGCATTGGCTCCTGATTTTTCAAGTTAAATAATTGCTTAATTGTAATGCATCCTA 420
consensus_10477#1      GGCAAGGCATTGGCTCCTGATTTTTCAAGTTAAATAATTGCTTAATTGTAATGCATCCTA 183
                       ************************************************************

consensus_10477#0      TTGTAAGTCATGTTTATTGGTATAATAGTCTCTTCATCTTTAAC---------------- 464
consensus_10477#1      TTGTAAGTCATGTTTATTGGTATAATAGTCTCTTCATCTTTAGCCTGAATTGATAGCTTT 243
                       ****************************************** *                

consensus_10477#0      -AAAAAAAAAAAA--------AAA---------------------------AAAAAAAAA 488
consensus_10477#1      GGAAATATATAAATGCTTGTCAAATCTGTTAAATGTATGATATGACTTGCTAAAAAAAAA 303
                         *** * * ***        ***                           *********

consensus_10477#0      AAAAAAAAAAAAAAAAAAAAAAAAAAAA--------------------------- 516
consensus_10477#1      AAAAAAAAAAAAAAAAAAAAAAAAAAAACACTGTCATGCCATTACGTAGCGTATC 358
                       ****************************