These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_10489#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 610 fasta sequence [AACATTAACCCCAATCCTATCCTGCCAATAAAGCCCTTCCTTTCTTCCTCGTCTCCAGCGGCCGCTTCCTCGACCGTACCCTCCTCAGGATCATGGAGATGAAGAAGATTGCCTGCGCCGTCCTTGTCGCTGCCTCGGCCACCGTGGCCCTCGCCGTCGAGGCGCCCGCCCCTGCCCCCACCAGCGCCGCCGCCACCTCGGCCGCCTTCCCGGCGGTCGGCGCGGTGATCGGCGCCTCCATGCTGTCCTTCTTCGCCTACTACCTACAGTAAGGAAGGGAGGAATGATGAAGGTGTTGCGTGAGTGTGGGTGTGGAGGGGAGGAGAGNNNNTTTTGGTTTGTNTTTGTTGGTTATTGTTTTGTGGTTATGTGTGTTTTTGGGTGGGGGGTGTGGGGGGTGGATGGTTGGATGGTTTTTGGTTGGGTGGGGTTTGGTTGGGGTGGTAGTTTGTTTTGTTGTTTAGGGAGAGGAGGAGATGAGAGAAAAGGGTAAGTGGGAAAAAAAGTGAGTGAAGTGTGGAGGTAGGAAGAAAAGAAGGTAGTGGAAAAAAAATAAGTTAAGTATATTAGACTATATTGATTATGAGAGTACTCCCAAACCGAGCCAAGG] [+] EMBL CA755470 [AACATTAACCCCAATCCTATCCTGCCAATAAAGCCCTTCCTTTCTTCCTCGTCTCCAGCGGCCGCTTCCTCGACCGTACCCTCCTCAGGATCATGGAGATGAAGAAGATTGCCTGCGCCGTCCTTGTCGCTGCCTCGGCCACCGTGGCCCTCGCCGTCGAGGCGCCCGCCCCTGCCCCCACCAGCGCCGCCGCCACCTCGGCCGCCTTCCCGGCGGTCGGCGCGGTGATCGGCGCCTCCATGCTGTCCTTCTTCGCCTACTACCTACAGTAAGGAAGGGAGGAATGATGAAGGTGTTGCGTGAGTGTGGGTGTGGAGGGGAGGAGAGNNNNTTTTGGTTTGTNTTTGTTGGTTATTGTTTTGTGGTTATGTGTGTTTTTGGGTGGGGGGTGTGGGGGGTGGATGGTTGGATGGTTTTTGGTTGGGTGGGGTTTGGTTGGGGTGGTAGTTTGTTTTGTTGTTTAGGGAGAGGAGGAGATGAGAGAAAAGGGTAAGTGGGAAAAAAAGTGAGTGAAGTGTGGAGGTAGGAAGAAAAGAAGGTAGTGGAAAAAAAATAAGTTAAGTATATTAGACTATATTGATTATGAGAGTACTCCCAAACCGAGCCAAGG] consensusID : consensus_10489#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 486 fasta sequence [GCCGTCCTTTGTCGCTGCCTCGGC-AACCGTGGCCCTTCGCCGTCAAGGCGCCCGCCCCTGCCCCCCACNAGCGCCGCCG-C-AACCTCGGGCCCCTT-CCCGGC-GGTCGGCGCGGTGATCGGCGCCTCCATGCTGTCCTTCTTCGCCTACTACCTACAGTAAGGAAGGGAGGAATGATGAAGGTGTTGCGTGAGTGTGGGTGTGGAGGGGAGGAGAGGACATTTGGTTTGATATGTGTTCGTTATCGTTCATGTTATAATTAAGTGTCTAAATGTGGTTTTTGTTTGGATTTGATTGACAATGTTGATCCATTAGTCCATTCATTTAATTTGCTCGCCTTTTCTTCCCCTCGTGTGTTCATTTGCTAATTACATTTGTAAAGAGGGGAAAATGAGGTGGCATTACTATTATTTTTTATAATATGATAATTGGATATTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA] [-] EMBL AU064073 [GCCGTCCTTTGTCGCTGCCTCGGCNAACCGTGGCCC TCGCCGTCGAGGCGCCCGCCCCTGCCCCCCACCAGCGCCGCCGCC ACCCTCGGCCCCCTTCCCCGGC GGTCGNCGCGGTGATCGGCACCTCCATGCTGTCCTTCTTCGCCTACTACCTACAGTAAGGAAGGGAGGAATGATGAAGGTGTTGCGTGAGTGTGGGTGTGGAGGGGAGGAGAGGACATTTGGTTTGATATGTGTTCGTTATCGTTCATGTTATAATTAAGTGTCTAAATGTGGTTTTTGTTTGGATTTGATTGACAATGTTGAACCATTAGTCCANTCATTTAATTTGCTCGCCTTTTCTTCCCCTCGTGTGTTNATTTGCTAATTACATTTGTAAAGAGGGGAAAATGAGGTGGCATTACTATTATTTTTTATAATATGA ] [-] EMBL AU065070 [ CCGTCC TTGTCGCTGCCTGGGC AACCGTGGCCCTTCGCCGTCAAGGCGCCCGCCCCTGCCCCCCACNAGCGCCGCCG C AACCTCGGGCCCCTT CCCGGC GGTCGGCGCGGTGATCGGCGCCTCCATGCTGTCCTTCCTCGCCTACTACCTACAGTAAGGAAGGGAGGAATGATGAAGGTGTTGCGTGAGTGTGGGTGTGGAGGGGAGGAGAGGACATTTGGTTTGATATGTGTTCGTTATCGTTCATGTTATAATTAAGTGTCTAAATGTGGTTTTTGTTTGGATTTGATTGACAATGTTGATCCATTAGTCCATTCATTTAATTTGCTCGCCTTTTCTTCCCCTCGTGTGTTCATTTGCTAATTACATTTGTAAAGAGGGGAAAATGAGGTGGCATTACTATTATTTTTTATAATATGA ] [-] EMBL AU064857 [ GGC CACCGTGGCCCTCNCCCGTCAAGGCGCCGGNCCTTGCCCCCAACAAGCGCCGCCG CAAACCTCGGGCCCCTT CCCGGCGGGTCGGCCCNGTGANCGGCGCCTCCATGCTGTCCCTCCTCGCCTACTACCTACAGTAAGGAAGGGAGGAATGATGAAGGTGTTGCGTGAGTGTGGGTGTGGAGGGGAGNAGAGGACATTTGGTTTGATATGTGTTCGTTATCGTTCATGTTATAATTAAGTGTCTAAATGTGGTTTTTGTTTGGATTTGATTGACAATGTTGATCCATTAGTCCATTCATTTAATTTGCTCGCCTTTTCTTCCCCTCGTGTGTTCATTTGCTAATTACATTTGTAAAGAGGGGAAAATGAGGTGGNATTACTATTATTTTTTATAATATGA ] [-] EMBL AU064823 [ TCCTTCTTCGCCTACTACCTACAGTAAGNAAGGTAGGAATGATGAAGGTGTTGCGTGAGTGTGGGTGTGGAGNGGAGGAGAGGACATTTGGTTTGATATGTGCTCGTTATCGTTCATGTTATAATTAAGTGTCTAAATGTGGTTTNTGTTTGGATTTGATTGACAATGTTGATCCATTAGTCCATTCATTTAATTTGCTCGCCTTTTCTTCCCCTCGTGTGTTCATTTGCTAATTACATTTGTAAAGAGGGGAAAATGAGGTGGCATTACTATTATTTTTTATAATATGA ] [+] EMBL AU197286 [ TTAAGTGTCTAAATGTGGTTTTTGTTTGGATTTGATTGACAATGTTGATCCATTAGTCCATTCATTTAATTTGCTCGCCTTTNCTTCCCCTCGTGTGTTCATTTGCTAATTACATTTGTAAAGAGGGGAAAATGAGGTGGCATTACTATTATTTTTAATAATATGATAATTGGATATTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA] consensusID : consensus_10489#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 396 fasta sequence [CCACCCTCGGGCCCCTTCCCCGGCGGNCGGCCCGGTGATCGGCCCCTCCATGCTGTCCTTCCTCGCCTACTACCTACAGTAAGGAAGGGAGGAATGATGAAGGTGTTNCGTGAGTGTGGGTGTGGAGGGGAGGAGAGGACATTTGGTTTGATATGTGNNCGTTATCGGTCATGTTATAATTAAGTGTCNAAATGTGGTTTTTGTTTGGATTTGATTGACAATGNTGANCCATTAGNCCANTCATTTAATTTGCTCGCCTTNTNANCCCCTCGTGTGNTNATTTGCNAATTACATTTGTAAAGAGGGGAAAATGAGGTGGCATTACTATTATTTTTTATAATATGATAATTGGATATTAATCTGTGTTCNAAAAATNATAGTAATGCCACCTNANTT] [-] EMBL AU069826 [CCACCCTCGGGCCCCTTCCCCGGCGGNCGGCCCGGTGATCGGCCCCTCCATGCTGTCCTTCCTCGCCTACTACCTACAGTAAGGAAGGGAGGAATGATGAAGGTGTTNCGTGAGTGTGGGTGTGGAGGGGAGGAGAGGACATTTGGTTTGATATGTGNNCGTTATCGGTCATGTTATAATTAAGTGTCNAAATGTGGTTTTTGTTTGGATTTGATTGACAATGNTGANCCATTAGNCCANTCATTTAATTTGCTCGCCTTNTNANCCCCTCGTGTGNTNATTTGCNAATTACATTTGTAAAGAGGGGAAAATGAGGTGGCATTACTATTATTTTTTATAATATGATAATTGGATATTAATCTGTGTTCNAAAAATNATAGTAATGCCACCTNANTT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_10489#1 ------------------------------------------------------------ consensus_10489#2 ------------------------------------------------------------ consensus_10489#0 AACATTAACCCCAATCCTATCCTGCCAATAAAGCCCTTCCTTTCTTCCTCGTCTCCAGCG 60 consensus_10489#1 -------------------------------------------------------GCCGT 5 consensus_10489#2 ------------------------------------------------------------ consensus_10489#0 GCCGCTTCCTCGACCGTACCCTCCTCAGGATCATGGAGATGAAGAAGATTGCCTGCGCCG 120 consensus_10489#1 CCTTTGTCGCTGCCTCGGCAACCGTGGCCCTTCGCCGTCAAGGCGCCCGCCCCTGCCCCC 65 consensus_10489#2 ------------------------------------------------------------ consensus_10489#0 TCCTTGTCGCTGCCTCGGCCACCGTGGCCCT-CGCCGTCGAGGCGCCCGCCCCTGCCCCC 179 consensus_10489#1 CACNAGCGCCGCCGCAACCTCGGGCCCCTTCCC-GGCGGTCGGCGCGGTGATCGGCGCCT 124 consensus_10489#2 -------------CCACCCTCGGGCCCCTTCCCCGGCGGNCGGCCCGGTGATCGGCCCCT 47 consensus_10489#0 -ACCAGCGCCGCCGCCACCTCGGCCGCCTTCCC-GGCGGTCGGCGCGGTGATCGGCGCCT 237 * ****** * ******* ***** **** *********** *** consensus_10489#1 CCATGCTGTCCTTCTTCGCCTACTACCTACAGTAAGGAAGGGAGGAATGATGAAGGTGTT 184 consensus_10489#2 CCATGCTGTCCTTCCTCGCCTACTACCTACAGTAAGGAAGGGAGGAATGATGAAGGTGTT 107 consensus_10489#0 CCATGCTGTCCTTCTTCGCCTACTACCTACAGTAAGGAAGGGAGGAATGATGAAGGTGTT 297 ************** ********************************************* consensus_10489#1 GCGTGAGTGTGGGTGTGGAGGGGAGGAGAGGACATTTGGTTTGATATGTGTTCGTTATCG 244 consensus_10489#2 NCGTGAGTGTGGGTGTGGAGGGGAGGAGAGGACATTTGGTTTGATATGTGNNCGTTATCG 167 consensus_10489#0 GCGTGAGTGTGGGTGTGGAGGGGAGGAGAGNNNNTTTTGGTTTGTNTTTGTTGGTTATTG 357 ***************************** *** * ** * * ** ***** * consensus_10489#1 TTCATGTTATAATTAAGTGTCTAAATGTGGTTTTTGTTTGGATTTGATTGACA-ATGTTG 303 consensus_10489#2 GTCATGTTATAATTAAGTGTCNAAATGTGGTTTTTGTTTGGATTTGATTGACA-ATGNTG 226 consensus_10489#0 TTT-TGTGGTTAT-GTGTGTTTTTGGGTGGGGGGTGTGGGGGGTGGATGGTTGGATGGTT 415 * *** * ** **** **** *** ** * *** * *** * consensus_10489#1 ATCCATTAGTCCATTCATTTAATTTGCTCGCCTTTTCTTCCCCTCGTGTGTTCATTTGCT 363 consensus_10489#2 ANCCATTAGNCCANTCATTTAATTTGCTCGCCTTNTNANCCCCTCGTGTGNTNATTTGCN 286 consensus_10489#0 TTTGGTTGGGTGGG--GTTTGGTTGGGGTGGTAGTTTGTTTTGTTGTTTAGGGA---GAG 470 ** * *** ** * * * * ** * * * consensus_10489#1 AATTACATTTGTAAAGAGGGGAAAATGAGGTGGCATTACTATTATTTTTTATAATATGAT 423 consensus_10489#2 AATTACATTTGTAAAGAGGGGAAAATGAGGTGGCATTACTATTATTTTTTATAATATGAT 346 consensus_10489#0 GAGGAGATGAG-AGAAAAGGGTAAGTGGGAAAAAAAGTGAGTGAAGTGTGGAGGTAGGAA 529 * * ** * * * * *** ** ** * * * * * * ** ** consensus_10489#1 AATTGGATATTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 483 consensus_10489#2 AATTGGATATTAATCTGTGTTCNAAAAATNATAGTAATGCCACCTNANTT---------- 396 consensus_10489#0 GAAAAGAAGGTAGTGGAAAAAAAATAAGTTAAGTATATTAGACTATATTGATTATGAGAG 589 * ** ** * ** * * * * consensus_10489#1 AAA------------------ 486 consensus_10489#2 --------------------- consensus_10489#0 TACTCCCAAACCGAGCCAAGG 610 |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||