These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_10498#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 6 consensus length = 981 fasta sequence [AAACCAACTCCGACGACCACCGGAGTCGGAGAGCATCAAGAATCGACGACGATCGATCATGGCCATCCCCACCATCCTGGGCAGTCTGAAGCTCACGCCATCCCCACCCTCCGCCACGCCGGTGCGCTCCTCCGCCTCCTCCTCCCTGCATTTCCACCTCGCCAACGCCGGCGCCGCCGCGCTCGTCGCGGCCTCGCTCCTCGTCGCCGACCCGGCCCTGGCATTCAAGGGAGGAGGCCCGTACGGGC-AGCAGGTGACACGGGGGCAGGACCTCACCGGCAAGGACTTCAGT-GGCCAGACGCTCATCAGGCAGGACTTCAAGA-CGTCTATACTGAGGCAGGCGAACTTCAAAGGCGCGAAGCTGC-TCGGCGCGAGCTTC-TTTGATGCAGATC-TGACAGGTGCTGATCTCTCTGA-TGCTGATCTTAGAGGTGCAGATTTCTCACTGGCAAATGTATCGAAGGTAAATCTGACAAATGCCAACTTGGAAGGGGCAC-TTGCCACAGGAAA-CACGACGTTCAAAGGTTCCAACATATATGGA-GCAGATTTTACAGATGTTCCACTGCGAGACGATCAGCGTGAATACCTCTGCAAAATTGCT-GATGGGGTCAATACAACCACTGGAAACGCCACGAAGGAGACTCTTTTCTGCAAATGATGAACAATAGAGAGACAGAGGAAGAGATCCAGTAGAGTTGAGGGTGCTGATTAAATTAGTTGCTGAATAGTATCACTACTACTAGTATATTGCCGCCATGTTCTCTCTTTTTTCCCCAAGTGCAGAGAGGAGTAGTACACGATCACATGACATGAATAAATGTGCAAATGCTTAAGAGCAAGTTCAATAATATAGCCAACTACTATCTCCAATTCATCTATAGTCAATATAATAGCTCATTCATACAATAGTTACATAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAATTTTTTTAAAAAAAAAAAAAAAAAAAAAA] [+] EMBL AK104051 [AAACCAACTCCGACGACCACCGGAGTCGGAGAGCATCAAGAATCGACGACGATCGATCATGGCCATCCCCACCATCCTGGGCAGTCTGAAGCTCACGCCATCCCCACCCTCCGCCACGCCGGTGCGCTCCTCCGCCTCCTCCTCCCTGCATTTCCACCTCGCCAACGCCGGCGCCGCCGCGCTCGTCGCGGCCTCGCTCCTCGTCGCCGACCCGGCCCTGGCATTCAAGGGAGGAGGCCCGTACGGGC AGCAGGTGACACGGGGGCAGGACCTCACCGGCAAGGACTTCAGT GGCCAGACGCTCATCAGGCAGGACTTCAAGA CGTCTATACTGAGGCAGGCGAACTTCAAAGGCGCGAAGCTGC TCGGCGCGAGCTTC TTTGATGCAGATC TGACAGGTGCTGATCTCTCTGA TGCTGATCTTAGAGGTGCAGATTTCTCACTGGCAAATGTATCGAAGGTAAATCTGACAAATGCCAACTTGGAAGGGGCAC TTGCCACAGGAAA CACGACGTTCAAAGGTTCCAACATATATGGA GCAGATTTTACAGATGTTCCACTGCGAGACGATCAGCGTGAATACCTCTGCAAAATTGCT GATGGGGTCAATACAACCACTGGAAACGCCACGAAGGAGACTCTTTTCTGCAAATGATGAACAATAGAGAGACAGAGGAAGAGATCCAGTAGAGTTGAGGGTGCTGATTAAATTAGTTGCTGAATAGTATCACTACTACTAGTATATTGCCGCCATGTTCTCTCTTTTTTCCCCAAGTGCAGAGAGGAGTAGTACACGATCACATGACATGAATAAATGTGCAAATGCTTAAGAGCAAGTTCAATAATATAGCCAACTACTATCTCCAATTCATCTATAGTCAATATAATAGC ] [+] EMBL AK068113 [AAACCAACTCCGACGACCACCGGAGTCGGAGAGCATCAAGAATCGACGACGATCGATCATGGCCATCCCCACCATCCTGGGCAGTCTGAAGCTCACGCCATCCCCACCCTCCGCCACGCCGGTGAGCTCCTCCGCCTCCTCCTCCCTGCATTTCCACCTCGCCAACGCCGGCGCCGCCGCGCTCGTCGCGGCCTCGCTCCTCGTCGCCGACCCGGCCCTGGCATTCAAGGGAGGAGGCCCGTACGGGC AGCAGGTGACACGGGGGCAGGACCTCACCGGCAAGGACTTAAGT GGCCAGACGCTCATCAGGCAGGACTTCAAGA CGTCTATACTGAGGCAGGCGAACTTCAAAGGCGCGAAGCTGC TCGGCGCGAGCTTC TTTGATGCAGATC TGACAGGTGCTGATCTCTCTGA TGCTGATCTTAGAGGTGCAGATTTCTCACTGGCAAATGTATCGAAGGTAAATCTGACAAATGCCAACTTGGAAGGGGCAC TTGCCACAGGAAA CACGACGTTCAAAGGTTCCAACATATATGGA GCAGATTTTACAGATGTTCCACTGCGAGACGATCAGCGTGAATACCTCTGCAAAATTGCT GATGGGGTCAATACAACCACTGGAAACGCCACGAAGGAGACTCTTTTCTGCAAATGATGAACAATAGAGAGACAGAGGAAGAGATCCAGTAGAGTTGAGGGTGCTGATTAAATTAGTTGCTGAATAGTATCACTACTACTAGTATATTGCCGCCATGTTCTCTCTTTTTTCCCCAAGTGCAGAGAGGAGTAGTACACGATCACATGACATGAATAAATGTGCAAATGCTTAAGAGCAAGTTCAATAATATAGCCAAC ] [+] EMBL AK058909 [ CCAACTCCGACGACCACCGGAGTCGGAGAGCATCAAGAATCGACGACGATCGATCATGGCCATCCCCACCATCCTGGGCAGTCTGAAGCTCACGCCATCCCCACCCTCCGCCACGCCGGTGCGCTCCTCCGCCTCCTCCTCCCTGCATTTCCACCTCGCCAACGCCGGCGCCGCCGCGCTCGTCGCGGCCTCGCTCCTCGTCGCCGACCCGGCCCTGGCATTCAAGGGAGGAGGCCCGTACGGGC AGCAGGTGACACGGGGGCAGGACCTCACCGGCAAGGACTTCAGT GGCCAGACGCTCATCAGGCAGGACTTCAAGA CGTCTATACTGAGGCAGGCGAACTTCAAAGGCGCGAAGCTGC TCGGCGCGAGCTTC TTTGATGCAGATC TGACAGGTGCTGATCTCTCTGA TGCTGATCTTAGAGGTGCAGATTTCTCACTGGCAAATGTATCGAAGGTAAATCTGACAAATGCCAACTTGGAAGGGGCAC TTGCCACAGGAAA CACGACGTTCAAAGGTTCCAACATATATGGA GCAGATTTTACAGATGTTCCACTGCGAGACGATCAGCGTGAATACCTCTGCAAAATTGCT GATGGGGTCAATACAACCACTGGAAACGCCACGAAGGAGACTCTTTTCTGCAAATGATGAACAATAGAGAGACAGAGGAAGAGATCCAGTAGAGTTGAGGGTGCTGATTAAATTAGTTGCTGAATAGTATCACTACTACTAGTATATTGCCGCCATGTTCTCTCTTTTTTCCCCAAGTGCAGAGAGGAGTAGTACACGATCACATGACATGAATAAATGTGCAAATGCTTAAGAGCAAGTTCAATAATATAGCCAACTACTATCTCCAATTCATCTATAGTCAATATAATAGCTCATTCATACAATAGTTACATA ] [+] EMBL OSS15080A [ ACTCCGACGACCACCGGAGTCGGAGAGCATCAAGAATCGACGACGATCGATCATGGCCATCCCCACCATCCTGGGCAGTCTGAAGCTCACGCCATCCCTACCCTCCGCCACGACGGTGCGCTCCTCCGCCTCCTCCTCCCTGCATTTCCACCTCGCCAACGNCGGCGCCG CGCNNTCGTCGCGCCCTCGCTCCTCGTCGNCGACCCGGCCCTGGCATTCAAGGGAGGAGGCCCGTACGGGCAAGCAGGTGACACGGGGGCAGGACCTCACCGGCAAGGACTTCAGTGGGCCAGACGGTCATCAGGCAGGACTTCAAGACCGTCTATACTGAGGCAGGCGAACTTCAAAGGCGCGAA TTGCTTCGGCGNGAGNTTCTTTTGATTGAGGTCTTGACAAGTGNTGATCTCTCTGATTGTTG TCTT ] [+] EMBL AU078156 [ TCACTGGCAAATGTATCGAAGGTAAATCTGACAAATGCCAACTTGGAAGGGGCACTTTGCCACAGGAAACCACGACGTTCAAAGGTTCCAACATATATGGANGCAGATTTTACAGATGTTCCACTGCGAGACGATCAGCGTGAATACCTCTGCAAAATTGCTCGATGGGGTCAATACAACCACTGGAAACGCCACGAAGGAGACTCTTTTCTGCAAATGATGAACAATAGAGAGACAGAGGAAGAGATCCAGTAGAGTTGAGGGTGCTGATTAAATTAGTTGCTGAATAGTATCACTACTACTAGTATATTGCCGCCATGTTCTCTCTTTTTTCCCCAAGTGCAGAGAGGAGTAGTACACGATCACATGACATGAATAAATGTGCAAATGCTTAAGAGCAAGTTCAATAATATAGCCAACTACTATCTCCAATTCAaaaa ] [+] EMBL CF300817 [ GAGTAGTACACGATCATATGACATGAATAAATGTGCAAATGCTTAAGAGCAAGTTCAATAATATAGCCAACTACTATCTCCAATTCATCTATAGTCAATATAATAGCTCATTCATACAATAGTTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAATTTTTTTAAAAAAAAAAAAAAAAAAAAAA] consensusID : consensus_10498#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 538 fasta sequence [CTGGCATTCAAGGGAGGAGGCCCGTACGGGCAGCAGGTGACACGGGGGCAGGACCTCACCGGCAAGGACTTCAGTGGCCAGACGCTCATCAGGCAGGACTTCAAGACGTCTATACTGAGGCAGGCGAACTTCAAAGGCGCGAAGCTGCTCGGCGCGAGCTTCTTTGATGCAGATCTGACAGGTGCTGATCTCTCTGATGCTGATCTTAGAGGTGCAGATTTCTCACTGGCAAATGTATCGAAGGTAGTACTGCATATTGCTCAAAGAAAAGCATTAGCGATAGCAAGCTAATTGAAATGCTACTACATTCCACATTGACCATTGCATTGTTCAGAAAGCCTGGATTGTTTTTTCCTTTTTACTGATTAGACCAGTAATAAATTGATAGCAATTTGGCATTGGCATCATAGCAATATTGAACAAGCTTGCGTTACATAATATAATTGGTCATTACATAAGTCCTCACTTTCTTCAGAAAGTCATTGACCACTTTCTGATTAAGTTACTACCAGTTTGTCAAGCATGGATTTCACAGGGT] [+] EMBL CF310364 [CTGGCATTCAAGGGAGGAGGCCCGTACGGGCAGCAGGTGACACGGGGGCAGGACCTCACCGGCAAGGACTTCAGTGGCCAGACGCTCATCAGGCAGGACTTCAAGACGTCTATACTGAGGCAGGCGAACTTCAAAGGCGCGAAGCTGCTCGGCGCGAGCTTCTTTGATGCAGATCTGACAGGTGCTGATCTCTCTGATGCTGATCTTAGAGGTGCAGATTTCTCACTGGCAAATGTATCGAAGGTAGTACTGCATATTGCTCAAAGAAAAGCATTAGCGATAGCAAGCTAATTGAAATGCTACTACATTCCACATTGACCATTGCATTGTTCAGAAAGCCTGGATTGTTTTTTCCTTTTTACTGATTAGACCAGTAATAAATTGATAGCAATTTGGCATTGGCATCATAGCAATATTGAACAAGCTTGCGTTACATAATATAATTGGTCATTACATAAGTCCTCACTTTCTTCAGAAAGTCATTGACCACTTTCTGATTAAGTTACTACCAGTTTGTCAAGCATGGATTTCACAGGGT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_10498#0 AAACCAACTCCGACGACCACCGGAGTCGGAGAGCATCAAGAATCGACGACGATCGATCAT 60 consensus_10498#1 ------------------------------------------------------------ consensus_10498#0 GGCCATCCCCACCATCCTGGGCAGTCTGAAGCTCACGCCATCCCCACCCTCCGCCACGCC 120 consensus_10498#1 ------------------------------------------------------------ consensus_10498#0 GGTGCGCTCCTCCGCCTCCTCCTCCCTGCATTTCCACCTCGCCAACGCCGGCGCCGCCGC 180 consensus_10498#1 ------------------------------------------------------------ consensus_10498#0 GCTCGTCGCGGCCTCGCTCCTCGTCGCCGACCCGGCCCTGGCATTCAAGGGAGGAGGCCC 240 consensus_10498#1 -------------------------------------CTGGCATTCAAGGGAGGAGGCCC 23 *********************** consensus_10498#0 GTACGGGCAGCAGGTGACACGGGGGCAGGACCTCACCGGCAAGGACTTCAGTGGCCAGAC 300 consensus_10498#1 GTACGGGCAGCAGGTGACACGGGGGCAGGACCTCACCGGCAAGGACTTCAGTGGCCAGAC 83 ************************************************************ consensus_10498#0 GCTCATCAGGCAGGACTTCAAGACGTCTATACTGAGGCAGGCGAACTTCAAAGGCGCGAA 360 consensus_10498#1 GCTCATCAGGCAGGACTTCAAGACGTCTATACTGAGGCAGGCGAACTTCAAAGGCGCGAA 143 ************************************************************ consensus_10498#0 GCTGCTCGGCGCGAGCTTCTTTGATGCAGATCTGACAGGTGCTGATCTCTCTGATGCTGA 420 consensus_10498#1 GCTGCTCGGCGCGAGCTTCTTTGATGCAGATCTGACAGGTGCTGATCTCTCTGATGCTGA 203 ************************************************************ consensus_10498#0 TCTTAGAGGTGCAGATTTCTCACTGGCAAATGTATCGAAGGTAAATCTGACAAATGCCAA 480 consensus_10498#1 TCTTAGAGGTGCAGATTTCTCACTGGCAAATGTATCGAAGGTAGTACTGCATATTGCTCA 263 ******************************************* *** * *** * consensus_10498#0 CTTGGAAGGGGCACTTGCCACAGGAAACACGACGTTCAAAGGTTCCAACATATATGGAGC 540 consensus_10498#1 ---AAGAAAAGCATTAGCGATAGCAAGCT---AATTGAAATGCTACTACAT-TCCACATT 316 * *** * ** * ** ** * ** *** * * * **** * * consensus_10498#0 AGATTTTACAGATGTTCCACTGCGAGACGATCAGCGTGAATACCTCTGCAAAATTGCTGA 600 consensus_10498#1 GACCATTGCAT-TGTTC-------AGAAAGCCTG---GATTGTTTTTTCCTTTTTACTGA 365 ** ** ***** *** * * ** * * * * ** **** consensus_10498#0 TGGGGTCAATACAACCACTGGAAACGCCACGAAGGAGACTCTTTTCTGCAAATGATGAAC 660 consensus_10498#1 TTAGACCAGTA-ATAAATTGATAGCAATTTGGCATTGGC---ATCATAGCAATATTGAAC 421 * * ** ** * * ** * * * * * * * *** ***** consensus_10498#0 AATAGAGAGACAGAGGAAGAGATCCAGTAGAGTTGAGGGTGCTGATTAAATTAGTTGCTG 720 consensus_10498#1 AAGCTTGCGTTACATAATATAATTGGTCATTACATAAGTCCTCACTTTCTTCAGAAAGTC 481 ** * * * * * ** * * * ** * ** * consensus_10498#0 AATAGTATCACTACTACTAGTATATTGCCGCCATGTTCTCTCTTTTTTCCCCAAGTGCAG 780 consensus_10498#1 ATTGACCACTTTCTGATTAAGTTACTACCAGTTTGTCAAGCATGGATTTCACAGGGT--- 538 * * * * * ** ** * ** *** * ** * ** * consensus_10498#0 AGAGGAGTAGTACACGATCACATGACATGAATAAATGTGCAAATGCTTAAGAGCAAGTTC 840 consensus_10498#1 ------------------------------------------------------------ consensus_10498#0 AATAATATAGCCAACTACTATCTCCAATTCATCTATAGTCAATATAATAGCTCATTCATA 900 consensus_10498#1 ------------------------------------------------------------ consensus_10498#0 CAATAGTTACATAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAATTTTTTTA 960 consensus_10498#1 ------------------------------------------------------------ consensus_10498#0 AAAAAAAAAAAAAAAAAAAAA 981 consensus_10498#1 --------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||