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Oryza sativa
cluster # 10506 cluster # 10506       Sequences # 7       consensus # 5


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_10506#0 length = 1377 sequences # 3  
consensus_10506#1 length = 885 sequences # 1  
consensus_10506#2 length = 672 sequences # 1  
consensus_10506#3 length = 409 sequences # 1  
consensus_10506#4 length = 159 sequences # 1  

consensusID : consensus_10506#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 1377
fasta sequence
                              [CTCGGTTGAAACAGCATTTGCTAGATAAGGACCTTGAGGATCAAGAAAAGATGGATGAAGATAGCAAACTCATTGAAGAACTGCGGGCAATCTGTGACCAGCAAAGGGCTCATATAGTGCAGTTAGAAAGGGCTTTGAAGTTTGAGATGGCGAAGCAGGAGGAGAGCAAGAAAATCATTAGTGAAGAACACCAGAGGTCAAATGAACAAATAACAGATTTGAAATACAAGCTTGCAAACTGTATGAATGCCCTTGAATCAAAAAACCTGGAATTGCTAAATCTGCAGACTGCCCTTGGACAGTACTATGCTGAGAGTGAAGCCAAGGAACGGCTTGGAGGTGATTTAGCTATGGCCAGGGAAGAATTGGCTAAATTGTCAGAGTCATTGAAGGTGGCAAATCAAGCAATTGAAATTTCAAGAAGAGAAAAGGAAGAGGTAGCTGCCAGGCTTTCACAAGTGGAGGGGATGTTGGCAGATGGGAAGCGCTCCATGCAGAAGCTTGAAAATGACAATTCCAGATTACGACGAGCGCTGGAACAAAGCATGACAACGCTCAATAGGATGTCACTCGATTCAGATAATTCTGTTGACAGGCGCATTGTGATTAAACTACTGGTCACTTACTTCCAGCGGAATCACAGCAAGGAGGTTTTGGATCTTATGGTTCGCATGCTTGGTTTCTCTGAGGAAGACAAGCAAAGGATTGGTTTTGCACAAAGTAATGCTGGCAAGGGTGTTGTCCGGGGTGTTTTGGGTCTTCCAGGACGCTTAGTTGGAGGCATTGTTGGCGGAAATTCAGCAGGCAAACCTACTCAAGCATCTCAGGACAACCAGTCATTTGCGGATCTATGGGTGGACTTCCTGCTCAAAGAGACGGAAGAAAGGGAAAAACGAGAAGCATCCGAAACTGCAAGGCTGTCGCAGGAAGAGAACCAGACTGCCAGCACCAGCAACGCATCAAGCGCGCAACCATCAGGGCATATCTCCAACCAAGCACCTGGCCCTTCCACAAGCCATCACATGTTCGGTCGTCAAGACACCGAATTTGCAACGGTTCCACTCACATCCTCAACATATACCTCCACACAGACTCCATTCTCAAGACCACCCCAAAGATGATTGTGATCAACTGTACAGTATCAGATGCCTTTTTCTTCAAAGCGTGCATCATGATGTAAGCTATTCGTTTCATTTGTTGACAATGTTATGATATAGCCAAATTCAAAGTTACCCCCTCATTTTTTGTTCCCCTTCATCTTCCCGGGATGTAAAGATGTCATATGTAAATGGACTCCTATCGTTCTACAGAAAATGGAGATAACATATTGCCAGAGTATATGATTCTGCAATTGAAACGTTTTTGTAAAAAAAAAAA]

[+] EMBL AK058827             [CTCGGTTGAAACAGCATTTGCTAGATAAGGACCTTGAGGATCAAGAAAAGATGGATGAAGATAGCAAACTCATTGAAGAACTGCGGGCAATCTGTGACCAGCAAAGGGCTCATATAGTGCAGTTAGAAAGGGCTTTGAAGTTTGAGATGGCGAAGCAGGAGGAGAGCAAGAAAATCATTAGTGAAGAACACCAGAGGTCAAATGAACAAATAACAGATTTGAAATACAAGCTTGCAAACTGTATGAATGCCCTTGAATCAAAAAACCTGGAATTGCTAAATCTGCAGACTGCCCTTGGACAGTACTATGCTGAGAGTGAAGCCAAGGAACGGCTTGGAGGTGATTTAGCTATGGCCAGGGAAGAATTGGCTAAATTGTCAGAGTCATTGAAGGTGGCAAATCAAGCAATTGAAATTTCAAGAAGAGAAAAGGAAGAGGTAGCTGCCAGGCTTTCACAAGTGGAGGGGATGTTGGCAGATGGGAAGCGCTCCATGCAGAAGCTTGAAAATGACAATTCCAGATTACGACGAGCGCTGGAACAAAGCATGACAACGCTCAATAGGATGTCACTCGATTCAGATAATTCTGTTGACAGGCGCATTGTGATTAAACTACTGGTCACTTACTTCCAGCGGAATCACAGCAAGGAGGTTTTGGATCTTATGGTTCGCATGCTTGGTTTCTCTGAGGAAGACAAGCAAAGGATTGGTTTTGCACAAAGTAATGCTGGCAAGGGTGTTGTCCGGGGTGTTTTGGGTCTTCCAGGACGCTTAGTTGGAGGCATTGTTGGCGGAAATTCAGCAGGCAAACCTACTCAAGCATCTCAGGACAACCAGTCATTTGCGGATCTATGGGTGGACTTCCTGCTCAAAGAGACGGAAGAAAGGGAAAAACGAGAAGCATCCGAAACTGCAAGGCTGTCGCAGGAAGAGAACCAGACTGCCAGCACCAGCAACGCATCAAGCGCGCAACCATCAGGGCATATCTCCAACCAAGCACCTGGCCCTTCCACAAGCCATCACATGTTCGGTCGTCAAGACACCGAATTTGCAACGGTTCCACTCACATCCTCAACATATACCTCCACACAGACTCCATTCTCAAGACCACCCCAAAGATGATTGTGATCAACTGTACAGTATCAGATGCCTTTTTCTTCAAAGCGTGCATCATGATGTAAGCTATTCGTTTCATTTGTTGACAATGTTATGATATAGCCAAATTCAAAGTTACCCCCTCATTTTTTGTTCCCCTTCATCTTCCCGGGATGTAAAGATGTCATATGTAAATGGACTCCTATCGTTCTACAGAAAATGGAGATAACATA                                                  ]
[+] EMBL AU100721             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  GCATCTCAGGACAACCAGTNATTTGCGGATCTATGGGTGGACTTCCTGNTCAAAGAGACGGAAGAAAGGGAAAAACGAGAAGCATCCGAAACTGCAAGG TGTCGCAGGAAGAGAACCAGACTGCCAGCACCAGCAACGCATCAAGCGCGCAACCATCAGGGCATATCTCCAACCAAGCACCTGGCCCTTCCACAAGCCATCACATGTTCGGTCGTCAAGACACCGAATTTGCAACGGTTCCANTCACATCCTCAACATATACCTCCACACAGACTCCATTCTCAAGACCACCCCAAAGATGATTGTGATCAACTGTACAGTATCAGATGCCTTTTTCTTCAAAGCGTGCATCATGATGTAAGCTATTCGTTTCATTTGTTGACAATGTTATGATATAGCCAAATTCAAAGTTACCCCCTCATTTTTTGTTCCCCTTCATCTTCCCGGGATGTAAAGATGTCATATGTAAATGGACTCCTATCGTTCTACAGAAAATGGAGATAACATATTGCCAGAGTATATGATTCTGCAATTGAAACGTTTTTGTAAAAAAAAAAA]
[+] EMBL C25841               [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      TCGTCAAGACACCGAATTTGCAACGGTTCCACTCACATCCTCAACATATACCTCCACACAGACTCCATTCTCAAGACCACCCCAAAGATGATTGTGATCAACTGTACAGTATCAGATGCCTTTTTCTTCAAAGCGTGCATCATGATGTAAGCTATTCGTTTCATTTGTTGACAATGTTATGATATAGCCAAATTCAAAGTTACCCCNTNAT                                                                                                                                        ]


>consensus_10506#0 CTCGGTTGAAACAGCATTTGCTAGATAAGGACCTTGAGGATCAAGAAAAGATGGATGAAG ATAGCAAACTCATTGAAGAACTGCGGGCAATCTGTGACCAGCAAAGGGCTCATATAGTGC AGTTAGAAAGGGCTTTGAAGTTTGAGATGGCGAAGCAGGAGGAGAGCAAGAAAATCATTA GTGAAGAACACCAGAGGTCAAATGAACAAATAACAGATTTGAAATACAAGCTTGCAAACT GTATGAATGCCCTTGAATCAAAAAACCTGGAATTGCTAAATCTGCAGACTGCCCTTGGAC AGTACTATGCTGAGAGTGAAGCCAAGGAACGGCTTGGAGGTGATTTAGCTATGGCCAGGG AAGAATTGGCTAAATTGTCAGAGTCATTGAAGGTGGCAAATCAAGCAATTGAAATTTCAA GAAGAGAAAAGGAAGAGGTAGCTGCCAGGCTTTCACAAGTGGAGGGGATGTTGGCAGATG GGAAGCGCTCCATGCAGAAGCTTGAAAATGACAATTCCAGATTACGACGAGCGCTGGAAC AAAGCATGACAACGCTCAATAGGATGTCACTCGATTCAGATAATTCTGTTGACAGGCGCA TTGTGATTAAACTACTGGTCACTTACTTCCAGCGGAATCACAGCAAGGAGGTTTTGGATC TTATGGTTCGCATGCTTGGTTTCTCTGAGGAAGACAAGCAAAGGATTGGTTTTGCACAAA GTAATGCTGGCAAGGGTGTTGTCCGGGGTGTTTTGGGTCTTCCAGGACGCTTAGTTGGAG GCATTGTTGGCGGAAATTCAGCAGGCAAACCTACTCAAGCATCTCAGGACAACCAGTCAT TTGCGGATCTATGGGTGGACTTCCTGCTCAAAGAGACGGAAGAAAGGGAAAAACGAGAAG CATCCGAAACTGCAAGGCTGTCGCAGGAAGAGAACCAGACTGCCAGCACCAGCAACGCAT CAAGCGCGCAACCATCAGGGCATATCTCCAACCAAGCACCTGGCCCTTCCACAAGCCATC ACATGTTCGGTCGTCAAGACACCGAATTTGCAACGGTTCCACTCACATCCTCAACATATA CCTCCACACAGACTCCATTCTCAAGACCACCCCAAAGATGATTGTGATCAACTGTACAGT ATCAGATGCCTTTTTCTTCAAAGCGTGCATCATGATGTAAGCTATTCGTTTCATTTGTTG ACAATGTTATGATATAGCCAAATTCAAAGTTACCCCCTCATTTTTTGTTCCCCTTCATCT TCCCGGGATGTAAAGATGTCATATGTAAATGGACTCCTATCGTTCTACAGAAAATGGAGA TAACATATTGCCAGAGTATATGATTCTGCAATTGAAACGTTTTTGTAAAAAAAAAAA



consensusID : consensus_10506#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 885
fasta sequence
                              [GTGCAGTTAGAAAGGGCTTTGAAGTTTGAGATGGCGAAGCAGGAGGAGAGCAAGAAAATCATTAGTGAAGAACACCAGAGACTGCCCTTGGACAGTACTATGCTGAGAGTGAAGCCAAGGAACGGCTTGGAGGTGATTTAGCTATGGCCAGGGAAGAATTGGCTAAATTGTCAGAGTCATTGAAGGTGGCAAATCAAGCAATTGAAATTTCAAGAAGAGAAAAGGAAGAGGTAGCTGCCAGGCTTTCACAAGTGGAGGGGATGTTGGCAGATGGGAAGCGCTCCATGCAGAAGCTTGAAAATGACAATTCCGGATTACGACGAGCGCTGGAACAAAGCATGACAACGCTCAATAGGATGTCACTCGATTCAGATAATTCTGTTGACAGGCGCATTGTGATTAAACTACTGGTCACTTACTTCCAGCGGAATCACAGCAAAGAGGTTTTGGATCTTATGGTTCGCATGCTTGGTTTCTCTGAGGAAGACAAGCAAAGGATTGGTTTTGCACAAAGTAATGCTGGCAAGGGTGTTGTCCGGGGTGNTTTGGGTCTTCCAGGACGCTTAGTTGGAGGCATTGNTGGCGGAAATTCAGCAGGCAAACCTACTCAAGCATCTCAGGACAACCAGTCATTTGCGGATCTATGGGGTGGACTTNCTGCTCAAAGAGACCGGAAGAAAGGGAAAAACGAGAAGCATCCGAAACTGCAAGGCTGTCGCAGGAAGAGAACCAGACTGGCAGCACCAGCAACGCATNAAGCGCGCAACCATCAGGGCATATCTTCCAACAAGCACCTGGGCCNTTCACAAGCCATTACATGGTTCGGTCGGCAAGANACCGAANTTGCAACGGGTTCACTTANATTCTNAANAAATACCTTCACAC]

[+] EMBL CA764381             [GTGCAGTTAGAAAGGGCTTTGAAGTTTGAGATGGCGAAGCAGGAGGAGAGCAAGAAAATCATTAGTGAAGAACACCAGAGACTGCCCTTGGACAGTACTATGCTGAGAGTGAAGCCAAGGAACGGCTTGGAGGTGATTTAGCTATGGCCAGGGAAGAATTGGCTAAATTGTCAGAGTCATTGAAGGTGGCAAATCAAGCAATTGAAATTTCAAGAAGAGAAAAGGAAGAGGTAGCTGCCAGGCTTTCACAAGTGGAGGGGATGTTGGCAGATGGGAAGCGCTCCATGCAGAAGCTTGAAAATGACAATTCCGGATTACGACGAGCGCTGGAACAAAGCATGACAACGCTCAATAGGATGTCACTCGATTCAGATAATTCTGTTGACAGGCGCATTGTGATTAAACTACTGGTCACTTACTTCCAGCGGAATCACAGCAAAGAGGTTTTGGATCTTATGGTTCGCATGCTTGGTTTCTCTGAGGAAGACAAGCAAAGGATTGGTTTTGCACAAAGTAATGCTGGCAAGGGTGTTGTCCGGGGTGNTTTGGGTCTTCCAGGACGCTTAGTTGGAGGCATTGNTGGCGGAAATTCAGCAGGCAAACCTACTCAAGCATCTCAGGACAACCAGTCATTTGCGGATCTATGGGGTGGACTTNCTGCTCAAAGAGACCGGAAGAAAGGGAAAAACGAGAAGCATCCGAAACTGCAAGGCTGTCGCAGGAAGAGAACCAGACTGGCAGCACCAGCAACGCATNAAGCGCGCAACCATCAGGGCATATCTTCCAACAAGCACCTGGGCCNTTCACAAGCCATTACATGGTTCGGTCGGCAAGANACCGAANTTGCAACGGGTTCACTTANATTCTNAANAAATACCTTCACAC]


>consensus_10506#1 GTGCAGTTAGAAAGGGCTTTGAAGTTTGAGATGGCGAAGCAGGAGGAGAGCAAGAAAATC ATTAGTGAAGAACACCAGAGACTGCCCTTGGACAGTACTATGCTGAGAGTGAAGCCAAGG AACGGCTTGGAGGTGATTTAGCTATGGCCAGGGAAGAATTGGCTAAATTGTCAGAGTCAT TGAAGGTGGCAAATCAAGCAATTGAAATTTCAAGAAGAGAAAAGGAAGAGGTAGCTGCCA GGCTTTCACAAGTGGAGGGGATGTTGGCAGATGGGAAGCGCTCCATGCAGAAGCTTGAAA ATGACAATTCCGGATTACGACGAGCGCTGGAACAAAGCATGACAACGCTCAATAGGATGT CACTCGATTCAGATAATTCTGTTGACAGGCGCATTGTGATTAAACTACTGGTCACTTACT TCCAGCGGAATCACAGCAAAGAGGTTTTGGATCTTATGGTTCGCATGCTTGGTTTCTCTG AGGAAGACAAGCAAAGGATTGGTTTTGCACAAAGTAATGCTGGCAAGGGTGTTGTCCGGG GTGNTTTGGGTCTTCCAGGACGCTTAGTTGGAGGCATTGNTGGCGGAAATTCAGCAGGCA AACCTACTCAAGCATCTCAGGACAACCAGTCATTTGCGGATCTATGGGGTGGACTTNCTG CTCAAAGAGACCGGAAGAAAGGGAAAAACGAGAAGCATCCGAAACTGCAAGGCTGTCGCA GGAAGAGAACCAGACTGGCAGCACCAGCAACGCATNAAGCGCGCAACCATCAGGGCATAT CTTCCAACAAGCACCTGGGCCNTTCACAAGCCATTACATGGTTCGGTCGGCAAGANACCG AANTTGCAACGGGTTCACTTANATTCTNAANAAATACCTTCACAC



consensusID : consensus_10506#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 672
fasta sequence
                              [CGCGCGTGATGCGTGTGCGTAACCGCTCGGCGTGGATTATTTCGCCTGCGCCCGACGTGAACTGCGTCTTATCGGGGTAGGAATGCTCGTTTGCGGTGCGGGGGCTCGCGAGTCTGGGGCATGTTCTCGGAAGGAGGGTGTAATCGGGCGAGCTCTTCAACGGTCACGTCTGGCGCAGGAACATAAGCCGCGGATTATCTCCATCTATGCGTCAAGCGTGCACCCCTCAGGGTATGTCTTCAACCAAGCGCCTGTCCCTTCCACAAGCCATCGCATGTTCGGTGGTCAACACACTGAATTTGCAGCGGTTCCACTCGCATCCTCAACATATACCTCCACACAGACTCCATTCTCAAGACCACCCCAAAGATGATTGTGATCAACTGTACAGTATCAGATGCCTTTTTCTTCAAAGCGTGCATCATGATGTAAGCTATTCGTTTCATTTGTTGACAATGTTATGATATAGCCAAATTCAAAGTTACCCCCTCATTTTTTGTTCCCCTTCATCTTCCCGGGATGTAAAGATGTCATATGTAAATGGACTCCTATCGTTTTACAGAAAATGGAGATAACATATTGCCAGAGTATATGATTTTGCAATTGAAACGTTTTTGTACCCCTGTTTTGATATATACAAGCTAGAATCTGTTTGCAAAAAAAAAAAAAAAA]

[-] EMBL CA761747             [CGCGCGTGATGCGTGTGCGTAACCGCTCGGCGTGGATTATTTCGCCTGCGCCCGACGTGAACTGCGTCTTATCGGGGTAGGAATGCTCGTTTGCGGTGCGGGGGCTCGCGAGTCTGGGGCATGTTCTCGGAAGGAGGGTGTAATCGGGCGAGCTCTTCAACGGTCACGTCTGGCGCAGGAACATAAGCCGCGGATTATCTCCATCTATGCGTCAAGCGTGCACCCCTCAGGGTATGTCTTCAACCAAGCGCCTGTCCCTTCCACAAGCCATCGCATGTTCGGTGGTCAACACACTGAATTTGCAGCGGTTCCACTCGCATCCTCAACATATACCTCCACACAGACTCCATTCTCAAGACCACCCCAAAGATGATTGTGATCAACTGTACAGTATCAGATGCCTTTTTCTTCAAAGCGTGCATCATGATGTAAGCTATTCGTTTCATTTGTTGACAATGTTATGATATAGCCAAATTCAAAGTTACCCCCTCATTTTTTGTTCCCCTTCATCTTCCCGGGATGTAAAGATGTCATATGTAAATGGACTCCTATCGTTTTACAGAAAATGGAGATAACATATTGCCAGAGTATATGATTTTGCAATTGAAACGTTTTTGTACCCCTGTTTTGATATATACAAGCTAGAATCTGTTTGCAAAAAAAAAAAAAAAA]


>consensus_10506#2 CGCGCGTGATGCGTGTGCGTAACCGCTCGGCGTGGATTATTTCGCCTGCGCCCGACGTGA ACTGCGTCTTATCGGGGTAGGAATGCTCGTTTGCGGTGCGGGGGCTCGCGAGTCTGGGGC ATGTTCTCGGAAGGAGGGTGTAATCGGGCGAGCTCTTCAACGGTCACGTCTGGCGCAGGA ACATAAGCCGCGGATTATCTCCATCTATGCGTCAAGCGTGCACCCCTCAGGGTATGTCTT CAACCAAGCGCCTGTCCCTTCCACAAGCCATCGCATGTTCGGTGGTCAACACACTGAATT TGCAGCGGTTCCACTCGCATCCTCAACATATACCTCCACACAGACTCCATTCTCAAGACC ACCCCAAAGATGATTGTGATCAACTGTACAGTATCAGATGCCTTTTTCTTCAAAGCGTGC ATCATGATGTAAGCTATTCGTTTCATTTGTTGACAATGTTATGATATAGCCAAATTCAAA GTTACCCCCTCATTTTTTGTTCCCCTTCATCTTCCCGGGATGTAAAGATGTCATATGTAA ATGGACTCCTATCGTTTTACAGAAAATGGAGATAACATATTGCCAGAGTATATGATTTTG CAATTGAAACGTTTTTGTACCCCTGTTTTGATATATACAAGCTAGAATCTGTTTGCAAAA AAAAAAAAAAAA



consensusID : consensus_10506#3
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 409
fasta sequence
                              [CCCACTCAACATCCTTCAANCATTATACCTCCACTACNAGACTCCATTCTTCAAGGACCNACCCCAAAGATGATTGTGATCCAACTTGTACAGTNATTCAGATGCCTTTTTTCTTCAAAGCGTGCATCATGATGTAAGCTATTCGTTTCATTTGTTGACAATGTTATGATATAGCCAAATTCAAAGTTACCCCCTCATTTTTTGTTCCCCTTCATCTTCCCGGGATGTAAAGATGTCATATGTAAATGGACTCCTATCGTTCTACAGAAAATGGAGATAACATATTGCCAGAGTATATGATTCTGCAATTGAAACGTTTTTGTACCCCTGTTCTGATATATACAAGCTAGAATCTGTTTGCACTTGTATGTGTGAGTAATCGAGTAAATACAAGGGAGTGTTGCAAAAA]

[+] EMBL AU092121             [CCCACTCAACATCCTTCAANCATTATACCTCCACTACNAGACTCCATTCTTCAAGGACCNACCCCAAAGATGATTGTGATCCAACTTGTACAGTNATTCAGATGCCTTTTTTCTTCAAAGCGTGCATCATGATGTAAGCTATTCGTTTCATTTGTTGACAATGTTATGATATAGCCAAATTCAAAGTTACCCCCTCATTTTTTGTTCCCCTTCATCTTCCCGGGATGTAAAGATGTCATATGTAAATGGACTCCTATCGTTCTACAGAAAATGGAGATAACATATTGCCAGAGTATATGATTCTGCAATTGAAACGTTTTTGTACCCCTGTTCTGATATATACAAGCTAGAATCTGTTTGCACTTGTATGTGTGAGTAATCGAGTAAATACAAGGGAGTGTTGCAAAAA]


>consensus_10506#3 CCCACTCAACATCCTTCAANCATTATACCTCCACTACNAGACTCCATTCTTCAAGGACCN ACCCCAAAGATGATTGTGATCCAACTTGTACAGTNATTCAGATGCCTTTTTTCTTCAAAG CGTGCATCATGATGTAAGCTATTCGTTTCATTTGTTGACAATGTTATGATATAGCCAAAT TCAAAGTTACCCCCTCATTTTTTGTTCCCCTTCATCTTCCCGGGATGTAAAGATGTCATA TGTAAATGGACTCCTATCGTTCTACAGAAAATGGAGATAACATATTGCCAGAGTATATGA TTCTGCAATTGAAACGTTTTTGTACCCCTGTTCTGATATATACAAGCTAGAATCTGTTTG CACTTGTATGTGTGAGTAATCGAGTAAATACAAGGGAGTGTTGCAAAAA



consensusID : consensus_10506#4
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 159
fasta sequence
                              [CTGACTATTAGTCCATAATTTCAAAGGCTTACCCACCATCACATATATCCGTGTTCCCCTTTCACTCCTTCCCCGCGGAATGATAAAGAATGTCATATGTAAATGGACTCCTATCGTTCTACAGAAAATGGAGATAACATATTGCCAGAGTATAAAAAA]

[+] EMBL BQ908091             [CTGACTATTAGTCCATAATTTCAAAGGCTTACCCACCATCACATATATCCGTGTTCCCCTTTCACTCCTTCCCCGCGGAATGATAAAGAATGTCATATGTAAATGGACTCCTATCGTTCTACAGAAAATGGAGATAACATATTGCCAGAGTATAAAAAA]


>consensus_10506#4 CTGACTATTAGTCCATAATTTCAAAGGCTTACCCACCATCACATATATCCGTGTTCCCCT TTCACTCCTTCCCCGCGGAATGATAAAGAATGTCATATGTAAATGGACTCCTATCGTTCT ACAGAAAATGGAGATAACATATTGCCAGAGTATAAAAAA



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_10506#2      ------------------------------------------------------------
consensus_10506#3      ------------------------------------------------------------
consensus_10506#4      ------------------------------------------------------------
consensus_10506#0      CTCGGTTGAAACAGCATTTGCTAGATAAGGACCTTGAGGATCAAGAAAAGATGGATGAAG 60
consensus_10506#1      ------------------------------------------------------------
                                                                                   

consensus_10506#2      ------------------------------------------------------------
consensus_10506#3      ------------------------------------------------------------
consensus_10506#4      ------------------------------------------------------------
consensus_10506#0      ATAGCAAACTCATTGAAGAACTGCGGGCAATCTGTGACCAGCAAAGGGCTCATATAGTGC 120
consensus_10506#1      --------------------------------------------------------GTGC 4
                                                                                   

consensus_10506#2      ------------------------------------------------------------
consensus_10506#3      ------------------------------------------------------------
consensus_10506#4      ------------------------------------------------------------
consensus_10506#0      AGTTAGAAAGGGCTTTGAAGTTTGAGATGGCGAAGCAGGAGGAGAGCAAGAAAATCATTA 180
consensus_10506#1      AGTTAGAAAGGGCTTTGAAGTTTGAGATGGCGAAGCAGGAGGAGAGCAAGAAAATCATTA 64
                                                                                   

consensus_10506#2      ------------------------------------------------------------
consensus_10506#3      ------------------------------------------------------------
consensus_10506#4      ------------------------------------------------------------
consensus_10506#0      GTGAAGAACACCAGAGGTCAAATGAACAAATAACAGATTTGAAATACAAGCTTGCAAACT 240
consensus_10506#1      GTGAAGAACACCAGAG-------------------------------------------- 80
                                                                                   

consensus_10506#2      ------------------------------------------------------------
consensus_10506#3      ------------------------------------------------------------
consensus_10506#4      ------------------------------------------------------------
consensus_10506#0      GTATGAATGCCCTTGAATCAAAAAACCTGGAATTGCTAAATCTGCAGACTGCCCTTGGAC 300
consensus_10506#1      -----------------------------------------------ACTGCCCTTGGAC 93
                                                                                   

consensus_10506#2      -----------------------------------------------CGCGCGTGATGCG 13
consensus_10506#3      ------------------------------------------------------------
consensus_10506#4      ------------------------------------------------------------
consensus_10506#0      AGTACTATGCTGAGAGTGAAGCCAAGGAACGGCTTGGAGGTGATTTAGCTATGGCCAGGG 360
consensus_10506#1      AGTACTATGCTGAGAGTGAAGCCAAGGAACGGCTTGGAGGTGATTTAGCTATGGCCAGGG 153
                                                                                   

consensus_10506#2      TGTGCGTAACCGCTCGGCGTGGATTATTTCGCCTGCGCCCGACGTGAACTGCGTCTTATC 73
consensus_10506#3      ------------------------------------------------------------
consensus_10506#4      ------------------------------------------------------------
consensus_10506#0      AAGAATTGGCTAAATTGTCAGAGTCATTGAAGGTGGCAAATCAAGCAATTGAAATTTCAA 420
consensus_10506#1      AAGAATTGGCTAAATTGTCAGAGTCATTGAAGGTGGCAAATCAAGCAATTGAAATTTCAA 213
                                                                                   

consensus_10506#2      GGGGTAGGAATGCTCGTTTGCGGTGCGGGGGCTCGCGAGTCTGGGGCATGTTCTCGGAAG 133
consensus_10506#3      ------------------------------------------------------------
consensus_10506#4      ------------------------------------------------------------
consensus_10506#0      GAAGAGAAAAGGAAGAGGTAGCTGCCAGGCTTTCACAAGTGGAGGGGATGTTGGCAGATG 480
consensus_10506#1      GAAGAGAAAAGGAAGAGGTAGCTGCCAGGCTTTCACAAGTGGAGGGGATGTTGGCAGATG 273
                                                                                   

consensus_10506#2      GAGGGTGTAATCGGGCGAGCTCTTCAACGGTCACGTCTGGCGCAGGAACATAAGCCGCGG 193
consensus_10506#3      ------------------------------------------------------------
consensus_10506#4      ------------------------------------------------------------
consensus_10506#0      GGAAGCGCTCCATGCAGAAGCTTGAAAATGACAATTCCAGATTACGACGAGCGCTGGAAC 540
consensus_10506#1      GGAAGCGCTCCATGCAGAAGCTTGAAAATGACAATTCCGGATTACGACGAGCGCTGGAAC 333
                                                                                   

consensus_10506#2      ATTATCTC-CATCTATGCGTCAAGCGTGCACCCCTCAGGGTATGTCTTCAACCAAGCGCC 252
consensus_10506#3      ------------------------------------------------------------
consensus_10506#4      ------------------------------------------------------------
consensus_10506#0      AAAGCATGACAACGCTCAATAGGATGTCACTCGATTCAGATAATTCTGTTGACAGGCGCA 600
consensus_10506#1      AAAGCATGACAACGCTCAATAGGATGTCACTCGATTCAGATAATTCTGTTGACAGGCGCA 393
                                                                                   

consensus_10506#2      TGTCCCTTCCACAAGCCATCGCATGTTCG----GTGGTCAACACACTGAATTTGCAGCGG 308
consensus_10506#3      ------------------------------------------------------------
consensus_10506#4      ------------------------------------------------------------
consensus_10506#0      TTGTGATTAAACTACTGGTCACTTACTTCCAGCGGAATCACAGCAAGGAGGTTTTGGATC 660
consensus_10506#1      TTGTGATTAAACTACTGGTCACTTACTTCCAGCGGAATCACAGCAAAGAGGTTTTGGATC 453
                                                                                   

consensus_10506#2      TTCCACTCG-CATCCTC--AACAT-ATACCTCCACA--CAGAC--TCCATTCT-CAAGA- 358
consensus_10506#3      -CCCACTCAACATCCTTCAANCATTATACCTCCACTACNAGAC--TCCATTCTTCAAGGA 57
consensus_10506#4      ------------------------------------------------------------
consensus_10506#0      TTATGGTTCGCATGCTTGGTTTCTCTGAGGAAGACAAGCAAAGGATTGGTTTTGCACAAA 720
consensus_10506#1      TTATGGTTCGCATGCTTGGTTTCTCTGAGGAAGACAAGCAAAGGATTGGTTTTGCACAAA 513
                                                                                   

consensus_10506#2      -CCACCCCAAAGATGATTGTGATCAA--CTGTACAGTA--TCAGATGCCTTTTT-CTTCA 412
consensus_10506#3      CCNACCCCAAAGATGATTGTGATCCAACTTGTACAGTNATTCAGATGCCTTTTTTCTTCA 117
consensus_10506#4      ------------------------------------------------------------
consensus_10506#0      GTAATGCTGGCAAGGGTGTTGTCCGGGGTGTTTTGGGTCTTCCAGGACGCTTAG--TTGG 778
consensus_10506#1      GTAATGCTGGCAAGGGTGTTGTCCGGGGTGNTTTGGGTCTTCCAGGACGCTTAG--TTGG 571
                                                                                   

consensus_10506#2      AAGCGTGCATCATGATGTAAGCTATTCGTTTCA--TTTGTTGACAATGTTAT--GATATA 468
consensus_10506#3      AAGCGTGCATCATGATGTAAGCTATTCGTTTCA--TTTGTTGACAATGTTAT--GATATA 173
consensus_10506#4      --------------------------CTGACTA--TTAGTCCATAATTTCAAA-GGCTTA 31
consensus_10506#0      AGGCAT---TGTTGGCGGAAATTCAGCAGGCAAACCTACTCAAGCATCTCAGGACAACCA 835
consensus_10506#1      AGGCAT---TGNTGGCGGAAATTCAGCAGGCAAACCTACTCAAGCATCTCAGGACAACCA 628
                                                 *     *   *  *  *  ** * *        *

consensus_10506#2      GCCAAATTCAAAGTTACCCC-CTCATTTTTTGTTCCCCTTCATCTTCCCGGGATG-TAAA 526
consensus_10506#3      GCCAAATTCAAAGTTACCCC-CTCATTTTTTGTTCCCCTTCATCTTCCCGGGATG-TAAA 231
consensus_10506#4      CCCACCATCACATATATCCG-TG---TTCCCCTTTCACTCCTTCCCCGCGGAATGATAAA 87
consensus_10506#0      GTCATTTGCGGATCTATGGG-TGGACTTCCTGCTCAAAGAGAC-GGAAGAAAGGGAAAAA 893
consensus_10506#1      GTCATTTGCGGATCTATGGGGTGGACTTNCTGCTCAAAGAGACCGGAAGAAAGGGAAAAA 688
                         **    *  *  **          **     *                    *  ***

consensus_10506#2      -GA-TGTCATATGTAAATGGACTCCTATCGTTTTACAGAAAATGGAGATAACA-TATTGC 583
consensus_10506#3      -GA-TGTCATATGTAAATGGACTCCTATCGTTCTACAGAAAATGGAGATAACA-TATTGC 288
consensus_10506#4      -GAATGTCATATGTAAATGGACTCCTATCGTTCTACAGAAAATGGAGATAACA-TATTGC 145
consensus_10506#0      CGAGAAGCATCCGAAACTGCAAGGCTGTCGCAGGA-AGAGAACCAGACTGCCAGCACCAG 952
consensus_10506#1      CGAGAAGCATCCGAAACTGCAAGGCTGTCGCAGGA-AGAGAACCAGACTGGCAGCACCAG 747
                        **    ***  * ** ** *   ** ***    * *** **      *  **  *    

consensus_10506#2      CAGAGTATATGATTTT--GCAATTGAAACGTTTTTGTACCCCTGTTTT---GATATATAC 638
consensus_10506#3      CAGAGTATATGATTCT--GCAATTGAAACGTTTTTGTACCCCTGTTCT---GATATATAC 343
consensus_10506#4      CAGAGTATAAAAAA---------------------------------------------- 159
consensus_10506#0      CAACGCATCAAGCGCGCAACCATCAGGGCATATCTCCAACCAAGCACCTGGCCCTTCCAC 1012
consensus_10506#1      CAACGCATNAAGCGCGCAACCATCAGGGCATATCTTCCAACAAGCACCTGGGCCNTTCAC 807
                       **  * **                                                    

consensus_10506#2      AAGCTAGAATCTGTTTGCAAAAAAAAAAAAAAAA-------------------------- 672
consensus_10506#3      AAGCTAGAATCTGTTTGCACTTGTATGTGTGAGTAATCGAGTAAATACAAGGGAGTGTTG 403
consensus_10506#4      ------------------------------------------------------------
consensus_10506#0      AAGCCATCACATG-TTCGGTCGTCAAGACACCGAATTTGCAACGGTTCCACTCACATCCT 1071
consensus_10506#1      AAGCCATTACATGGTTCGGTCGGCAAGANACCGAANTTGCAACGGGTTCACTTANATTCT 867
                                                                                   

consensus_10506#2      ------------------------------------------------------------
consensus_10506#3      CAAAAA------------------------------------------------------ 409
consensus_10506#4      ------------------------------------------------------------
consensus_10506#0      CAACATATACCTCCACACAGACTCCATTCTCAAGACCACCCCAAAGATGATTGTGATCAA 1131
consensus_10506#1      NAANAAATACCTTCACAC------------------------------------------ 885
                                                                                   

consensus_10506#2      ------------------------------------------------------------
consensus_10506#3      ------------------------------------------------------------
consensus_10506#4      ------------------------------------------------------------
consensus_10506#0      CTGTACAGTATCAGATGCCTTTTTCTTCAAAGCGTGCATCATGATGTAAGCTATTCGTTT 1191
consensus_10506#1      ------------------------------------------------------------
                                                                                   

consensus_10506#2      ------------------------------------------------------------
consensus_10506#3      ------------------------------------------------------------
consensus_10506#4      ------------------------------------------------------------
consensus_10506#0      CATTTGTTGACAATGTTATGATATAGCCAAATTCAAAGTTACCCCCTCATTTTTTGTTCC 1251
consensus_10506#1      ------------------------------------------------------------
                                                                                   

consensus_10506#2      ------------------------------------------------------------
consensus_10506#3      ------------------------------------------------------------
consensus_10506#4      ------------------------------------------------------------
consensus_10506#0      CCTTCATCTTCCCGGGATGTAAAGATGTCATATGTAAATGGACTCCTATCGTTCTACAGA 1311
consensus_10506#1      ------------------------------------------------------------
                                                                                   

consensus_10506#2      ------------------------------------------------------------
consensus_10506#3      ------------------------------------------------------------
consensus_10506#4      ------------------------------------------------------------
consensus_10506#0      AAATGGAGATAACATATTGCCAGAGTATATGATTCTGCAATTGAAACGTTTTTGTAAAAA 1371
consensus_10506#1      ------------------------------------------------------------
                                                                                   

consensus_10506#2      ------
consensus_10506#3      ------
consensus_10506#4      ------
consensus_10506#0      AAAAAA 1377
consensus_10506#1      ------
                             




Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)