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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_10510#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 1131 fasta sequence
[GNCCNNNTGNGNGNNGCCCCCCGGGGTTTTTTGGGGGGGGGGGNGGGAACCCNNCGGGAAACGGTGGTTNGNGGGGNGGAAATGTGAGCCCCCCCGGCGAGGCGTACGTGGACTCGCTGTTCGACCTGGAGCCGCC-GGGGCGGGGGAAGAGGCTCGGC-GAGGACGAGCTGGTGACGCTCTGCTCC-GAGGTGATGAGCGCCGGC-ACGG-ACACCAGCGCCACCGCGCTGGAGTGGGCCATGATGC-ACCTCGTCCTCGACGCCGGCGTCCAGGACAAGCTCTACGGCGAGGTCGTCTCCAAGGTCGGCACCACCGCGCGCATCACCGAGGCCGACGTCGAGGCCATGCCCTACTTGCAGGCGGTGGTGAAGGAGACATTCCGGCGACACCCGCCGAGCCACTTCGTGCTGTCGCACGCGGCGACGAGGGACACGGAGCTCGGCGGGTACCGCGTGCCGGCGGACGCCAGCGTGGAGTTCTACACGGCGTGGGTGACGGAGAACCCGGCGACGTGGCCGGACCCGGAGGCGTGGCGCCCCGAGCGGTTCCTCGAGGGCGGCGAGGGCTTCGACACCGACATCACCGCCACCCGCGCCCTCCGCATGATGCCGTTCGGCGCCGGCCGCCGCATCTGCCCCGCCGCCACCCTCGGCGTCCTCCACATCCAGCTCATGCTCGCCAACATGGTCCGCGAGTTCCGCTGGGTCCCGCCCGCCGGCGAGGGCCCCCCCGACCCCACCGAGACCTTCGCCTTCACCGTCGTCATGAAGAACCCGCTCCGCGCCGCCCTCGTCGAGCGCCGCGTCGGCGGCG-AG-C--TCGCC-ACC--GGCGGCG-G-AGGCGGCG-CCGC-CGCG-TCCGCCTAATTAAGTACTACGATATAAATACTTCGGTAGCTGCTGTCCGTTGGATGGCGGATGGACGGACGGATGGATGGATATGCAGATGATGTCTTAAATTTTTACTTAAATAGAGTGTTCTCTTGATATCTTCTTCTTCTTTGATTTTTTTTTGTTTTATTAGTGGATCTCTTTTTTCTTTTCTCTCTTGTTTTTATCCAGGATTAAGTGTACCTACTGCTGCTTGATCTGCTCATATATATATTGGTTTCCAAGTCGAGAAAAAAAAAAAAAAAAAAAAAAA]
[+] EMBL AA753883 [GNCCNNNTGNGNGNNGCCCCCCGGGGTTTTTTGGGGGGGGGGGNGGGAACCCNNCGGGAAACGGTGGTTNGNGGGGNGGAAATGTGAGCCCCCCCGGCGAGG GAANGNGGATTNNTTTTTNGANTTGGACCCNCCNGGGGCGGGGGAAGAGGTTNGGCGGAGGACGAGCTGGTGACTTTTTGTTCCGGAGGTGATGAGCGCCGGCAACGGAACACCAGCGCCACCGCG TGGAGTGGGCCATGATGCAACTTCNTCTTCGACGCCGGCGTCCAGGACAAGCTNTACGGCGAGGTCGTCTCCAAGGTCGGCACCACCGCGCGCATCACCGAGGCCGACGTCGAGGCCATGCCCTACTTGCAGGCGGTGGTGAAGGAGACATTCCGGCGACACCCGCCGAGCCACTTCGTGCTGTCGCACGCGGCGACGAGGGACACGGAGCTCGGCGGGTACCGCGTGCCGGCGGACGCCAGCGTGGAGTTCTACACGGCGTGGGTGACGGAGAACCCGGCGACGTGGCCGGACCCGGAGGCGTGGCGCCC ]
[+] EMBL AK064920 [ GGCGAGGCGTACGTGGACTCGCTGTTCGACCTGGAGCCGCC GGGGCGGGGGAAGAGGCTCGGC GAGGACGAGCTGGTGACGCTCTGCTCC GAGGTGATGAGCGCCGGC ACGG ACACCAGCGCCACCGCGCTGGAGTGGGCCATGATGC ACCTCGTCCTCGACGCCGGCGTCCAGGACAAGCTCTACGGCGAGGTCGTCTCCAAGGTCGGCACCACCGCGCGCATCACCGAGGCCGACGTCGAGGCCATGCCCTACTTGCAGGCGGTGGTGAAGGAGACATTCCGGCGACACCCGCCGAGCCACTTCGTGCTGTCGCACGCGGCGACGAGGGACACGGAGCTCGGCGGGTACCGCGTGCCGGCGGACGCCAGCGTGGAGTTCTACACGGCGTGGGTGACGGAGAACCCGGCGACGTGGCCGGACCCGGAGGCGTGGCGCCCCGAGCGGTTCCTCGAGGGCGGCGAGGGCTTCGACACCGACATCACCGCCACCCGCGCCCTCCGCATGATGCCGTTCGGCGCCGGCCGCCGCATCTGCCCCGCCGCCACCCTCGGCGTCCTCCACATCCAGCTCATGCTCGCCAACATGGTCCGCGAGTTCCGCTGGGTCCCGCCCGCCGGCGAGGGCCCCCCCGACCCCACCGAGACCTTCGCCTTCACCGTCGTCATGAAGAACCCGCTCCGCGCCGCCCTCGTCGAGCGCCGCGTCGGCGGCG AG C TCGCC ACC GGCGGCG G AGGCGGCG CCGC CGCG TCCGCCTAATTAAGTACTACGATATAAATACTTCGGTAGCTGCTGTCCGTTGGATGGCGGATGGACGGACGGATGGATGGATATGCAGATGATGTCTTAAATTTTTACTTAAATAGAGTGTTCTCTTGATATCTTCTTCTTCTTTGATTTTTTTTTGTTTTATTAGTGGATCTCTTTTTTCTTTTCTCTCTTGTTTTTATCCAGGATTAAGTGTACCTACTGCTGCTTGATCTGCTCATATATAT ]
[+] EMBL OSS4175A [ GGCGAGGCGTACGTGGACTCGCTGTTCGACCTGGAGCCGCC GGGGCGGGGGAAGAGGCTCGGC GAGGACGAGCTGGTGACGCTCTGCTCC GAGGTGATGAGCGCCGGC ACGT ACACCAGCGCCACCGCGCTGTAGTGGGCCATGATGC ACCTNGTCCTCGACGCCGNCGTCCAGGACAAGCTCTACGNCGAGGTCGTCTCCAAGGTCGGNAACACCGTGCGCATCACCGAGGCCGACGTCGAGGCCATG CCTACTT ]
[+] EMBL AU166735 [ TCATGCTCGCCAACATGGTCCGCGAGTTCCGCTGGGTCCCGCCCGCCGGCGAGGGCCCCCCCGACCCCACCGAGACCTTCGCCTTCACCGTCGTCATGAAGAACCCGCTCCGCGCCGCCCTCGTCGAGCGCCGCGTCGGCGGCG AG C TCGCC ACC GGCGGCG G AGGCGGCG CCGC CGCG TCCGCCTAATTAAGTACTACGATATAAATACTTCGGTAGCTGCTGTCCGTTGGATGGCGGATGGACGGACGGATGGATGGATATGCAGATGATGTCTTAAATTTTTACTTAAATAGAGTGTTCTCTTGATATCTTCTTCTTCTTTGATTTTTTTTTGTTTTATTAGTGGATCTCTTTTTTCTTTTCTCTCTTGTTTTTATCCAGGATTAAGTGTACCTACTGCTGCTTGATCTGCTCATATATATATTGGTTTCCAAGTCGAGAAA ]
[+] EMBL AU097354 [ nGCGGCGTAGNCTTTCGCCTACCCTGGCGGCGTGTATGCGGCGTCCGCTCGCGTTCCGCCTAATTAAGTACTACGATATAAATACTTCGGTAGCTGCTGTCCGTTGGATGGCGGATGGACGGACGGATGGATGGATATGCAGATGATGTCTTAAATTTTTACTTAAATAGAGTGTTCTCTTGATATCTTCTTCTTCTTTGATTTTTTTTTGTTTTATTAGTGGATCTCTTTTTTCTTTTCTCTCTTGTTTTTATCCAGGATTAAGTGTACCTACTGCTGCTTGATCTGCTCATATATATATTGGTTTCCAAGTCGAGAAAAAAAAAAAAAAAAAAAAAAA]
consensusID : consensus_10510#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 587 fasta sequence
[ANATATATTTGTTTTTTANGAAACAACGGGAGTAAACNATTTTAAAAAAAAAAGTTGTATTGTAGTTTGGAATCTGGTTATAACGCTGTCCAAANTCATACTATAATTTGTTTTTCTTGTGAGACAGAGAAGCAGTTCGCTTCATTTCATTGTATAATAAAATGAAAAAAAAATGAAAAAAAAAAGAAGATACGGGTGATGGGGAATTGGGGATATGCTGAATTGCTAACCGAAATGGATGGATTCGCGGCGCTCGATCGCCGGCGTGCGCATGTGCAGGCGGTGGTGAAGGAGACATTCCGGCGACACCCGCCGAGCCACTTCGTGCTGTCGCACGCGGCGACGAGGGACACGGAGCTCGGCGGGTACCGCGTGCCGGCGGACGCCAGCGTGGAGTTCTACACGGCGTGGGTGACGGAGAACCCGGCGACGTGGCCGGACCCGGAGGCGTGGCGCCCCGAGCGGTTCCTCGAGGGCGGCGAGGGCTTCGACACCGACATCACCGCCACCCGCGCCCTCCGCATGATGCCGTTCGGCGCGGGCGCCGCATCTGCCCCGCCGCCACCCTCGGCGTTCTCCACATTCAG]
[+] EMBL AA753996 [ANATATATTTGTTTTTTANGAAACAACGGGAGTAAACNATTTTAAAAAAAAAAGTTGTATTGTAGTTTGGAATCTGGTTATAACGCTGTCCAAANTCATACTATAATTTGTTTTTCTTGTGAGACAGAGAAGCAGTTCGCTTCATTTCATTGTATAATAAAATGAAAAAAAAATGAAAAAAAAAAGAAGATACGGGTGATGGGGAATTGGGGATATGCTGAATTGCTAACCGAAATGGATGGATTCGCGGCGCTCGATCGCCGGCGTGCGCATGTGCAGGCGGTGGTGAAGGAGACATTCCGGCGACACCCGCCGAGCCACTTCGTGCTGTCGCACGCGGCGACGAGGGACACGGAGCTCGGCGGGTACCGCGTGCCGGCGGACGCCAGCGTGGAGTTCTACACGGCGTGGGTGACGGAGAACCCGGCGACGTGGCCGGACCCGGAGGCGTGGCGCCC ]
[+] EMBL AU225574 [ gccgcTCATTGTATAATAAAATGAAAAAAAAATGAAAAAAAAAAGAAGATACGGGTGATGGGGAATTGGGGATATGCTGAATTGCTAACCGAAATGGATGGATTCGCGGCGCTCGATCGCCGGCGTGCGCATGTGCAGGCGGTGGTGAAGGAGACATTCCGGCGACACCCGCCGAGCCACTTCGTGCTGTCGCACGCGGCGACGAGGGACACGGAGCTCGGCGGGTACCGCGTGCCGGCGGACGCCAGCGTGGAGTTCTACACGGCGTGGGTGACGGAGAACCCGGCGACGTGGCCGGACCCGGAGGCGTGGCGCCCCGAGCGGTTCCTCGAGGGCGGCGAGGGCTTCGACACCGACATCACCGCCACCCGCGCCCTCCGCATGATGCCGTTCGGCGCGGGCGCCGCATCTGCCCCGCCGCCACCCTCGGCGTTCTCCACATTCAG]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_10510#0 GNCCNNNTGNGNGNNGCCCCCCGGGGTTTTTTGGGGGGGGGGGNGGGAACCCNNCGGGAA 60
consensus_10510#1 --------------------------------------------------------ANAT 4
*
consensus_10510#0 ACGGTGGTTNGNGGGGNGGAAATGTGAGCCCCCCCGGCGAGGCGTACGTGGACTCGCTGT 120
consensus_10510#1 ATATTTGTTTTTTANGAAACAACGGGAGTAAACNATTTTAAA---AAAAAAAGTTGTATT 61
* * *** * ** * *** * * * * * * *
consensus_10510#0 TCGACCTGGAGCC--GCCGGGGCGGGGGAAGAGGCTCGGCGAGGACGAGCTGGTGACGCT 178
consensus_10510#1 GTAGTTTGGAATCTGGTTATAACGCTGTCCAAANTCATACTATAATTTGTTTTTCTTGTG 121
**** * * ** * * * * * * * * *
consensus_10510#0 CTGCTCCGAGGTGATGAGCGCCGGCACGGACACCAGCGCCACCGCGCTGGAGTGGGCCAT 238
consensus_10510#1 AGACAGAGAAGCAGTTCGCTTCATTTCATTGTATAATAAAATGAAAAAAAAATGAAAAAA 181
* ** * * ** * * * * * ** *
consensus_10510#0 GATGCACCTCGTCCTCGACGCCGGCGTCCAGGACAAGCTCTACGGCGAGGTCGTCTCCAA 298
consensus_10510#1 AAAAGAAGATACGGGTGATGG-GGAATTGGGGATATGCTGAATTGCTA----ACCGAAAT 236
* * ** * ** * *** * *** * ** * * *
consensus_10510#0 GGTCGGCACCACCGCGCGCATCACCGAGGCCGACGTCGAGGCCATGCCCTACTTGCAGGC 358
consensus_10510#1 GGATGGATTCGCGGCGCTC--------GATCGCCGGCGTGCGCATG-------TGCAGGC 281
** ** * * **** * * ** ** ** * **** *******
consensus_10510#0 GGTGGTGAAGGAGACATTCCGGCGACACCCGCCGAGCCACTTCGTGCTGTCGCACGCGGC 418
consensus_10510#1 GGTGGTGAAGGAGACATTCCGGCGACACCCGCCGAGCCACTTCGTGCTGTCGCACGCGGC 341
************************************************************
consensus_10510#0 GACGAGGGACACGGAGCTCGGCGGGTACCGCGTGCCGGCGGACGCCAGCGTGGAGTTCTA 478
consensus_10510#1 GACGAGGGACACGGAGCTCGGCGGGTACCGCGTGCCGGCGGACGCCAGCGTGGAGTTCTA 401
************************************************************
consensus_10510#0 CACGGCGTGGGTGACGGAGAACCCGGCGACGTGGCCGGACCCGGAGGCGTGGCGCCCCGA 538
consensus_10510#1 CACGGCGTGGGTGACGGAGAACCCGGCGACGTGGCCGGACCCGGAGGCGTGGCGCCCCGA 461
************************************************************
consensus_10510#0 GCGGTTCCTCGAGGGCGGCGAGGGCTTCGACACCGACATCACCGCCACCCGCGCCCTCCG 598
consensus_10510#1 GCGGTTCCTCGAGGGCGGCGAGGGCTTCGACACCGACATCACCGCCACCCGCGCCCTCCG 521
************************************************************
consensus_10510#0 CATGATGCCGTTCGGCGCCGGCCGCCGCATCTGCCCCGCCGCCACCCTCGGCGTCCTCCA 658
consensus_10510#1 CATGATGCCGTTCGGCGC-GGGCGCCGCATCTGCCCCGCCGCCACCCTCGGCGTTCTCCA 580
****************** ** ******************************** *****
consensus_10510#0 CATCCAGCTCATGCTCGCCAACATGGTCCGCGAGTTCCGCTGGGTCCCGCCCGCCGGCGA 718
consensus_10510#1 CATTCAG----------------------------------------------------- 587
*** ***
consensus_10510#0 GGGCCCCCCCGACCCCACCGAGACCTTCGCCTTCACCGTCGTCATGAAGAACCCGCTCCG 778
consensus_10510#1 ------------------------------------------------------------
consensus_10510#0 CGCCGCCCTCGTCGAGCGCCGCGTCGGCGGCGAGCTCGCCACCGGCGGCGGAGGCGGCGC 838
consensus_10510#1 ------------------------------------------------------------
consensus_10510#0 CGCCGCGTCCGCCTAATTAAGTACTACGATATAAATACTTCGGTAGCTGCTGTCCGTTGG 898
consensus_10510#1 ------------------------------------------------------------
consensus_10510#0 ATGGCGGATGGACGGACGGATGGATGGATATGCAGATGATGTCTTAAATTTTTACTTAAA 958
consensus_10510#1 ------------------------------------------------------------
consensus_10510#0 TAGAGTGTTCTCTTGATATCTTCTTCTTCTTTGATTTTTTTTTGTTTTATTAGTGGATCT 1018
consensus_10510#1 ------------------------------------------------------------
consensus_10510#0 CTTTTTTCTTTTCTCTCTTGTTTTTATCCAGGATTAAGTGTACCTACTGCTGCTTGATCT 1078
consensus_10510#1 ------------------------------------------------------------
consensus_10510#0 GCTCATATATATATTGGTTTCCAAGTCGAGAAAAAAAAAAAAAAAAAAAAAAA 1131
consensus_10510#1 -----------------------------------------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||