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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_10517#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 1417 fasta sequence
[CCTCTCCATTATTCCGACTCTCGTAAGATTAAGGGGGGAGGAATTGGAGGGCAGAGGCCGCCATTTTAATCAGTGGAAATAAAATCCACGCATTTTATATATTTAATTTAACCCCCAATTTTAACTTAGCAGCACACTAGCTAGCTAGCTGCTAAGTTAACTATTTGATCAGGTTACAGTTGCTGGCCTGACAGTTAATTAATCTCTTGCTGGTTGATTAGTTGCTATCAGCTACACGCTCTCGCTAGCTGCCACTGTACTAATACATACTCCCATCTATTCGCCTGAGAAAATATCGAAAAGTAGCAGCAAAGA-GGAGCAGGCAAGATGGTGATGAACCCTGACGCCGTCCGCAATGTCGTT-GGAATCATC-GGTAACTTGATAT-CGTT-CGGGTTGTTCTTGTC-GCCATTG-CCGACGTTCGTGACGAT-CGTGAAGAAGAAGGACGTGGAGGAGTTCGTGCCGGATCCGTACCTGGCG-ACGTTCCTCAACTGCGCGCTGTGGGTGTTCTACGGCCTACCCTTCATCCACCCCAACAGCATCCTCGTCGTCACCATCAACGGCACCGGACTCCTCATCGAGATCGCCTACCTCGCCATCTACTTCGCCTACGCCCCCAAGCCCAAGCGGTGCAGGATGCTCGGCGTCCTCACCGTGGAGCTCGTCTTCCTCGCCGCCGTCGCCGCCGGCGTGCTCCTCGGCGCCCACACCTACGACAAGCGCTCGCTCATCGTTGGCACCCTCTGCGTCTTCTTCGGCACCCTCATGTACGCCGCGCCGCTCACCATCATGAAACAAGTGATCGCGACAAAGAGCGTGGAGTACATGCCCTTCACGTTGTCGCTGGTGAGCTTCATCAACGGCATATGCTGGACAATATACGCGTTCATCCGCTTTGACATCCTCATCACGATACCGAACGGCATGGGGACGCTGCTGGGCGCGGCGCAGTTGATCCTCTACTTCTGCTACTACGACGGGTCGACGGCCAAGAACAAGGGCGCCCTCGAGCTGCCCAAGGACGGCGACTCCTCCGCTGTGTAGCTACATATGCTATATATCTTGCCATGCAAAGAACCACAAGATCGAAGCTAACACAAACCATGCAGCATATATGCACATCACACATGCAGTATCACAACGTACGCATGCTTGGATCTGCACGCACCACGCGCGCGTGCATGTAACTGTGACGGGTTATAATCGATCTGTTGGATGGATATGGATCATGGATGCAGGCAATGCAGCTGCTCTTCTGTTTGGACCCACTGAATTCGCCCGTGCATGCAGGCAGCTTCTTTGTGTGTGTACATATCCAACTATGCAAGAGGCAGGTATATGTGAGCAAAAGGCCCCNAAATGCAATGAGATCGATACACATGTTTGACTGTTCGTCTTAAAAAAAAAAAAAAAAAAAAAA]
[+] EMBL AK069614 [CCTCTCCATTATTCCGACTCTCGTAAGATTAAGGGGGGAGGAATTGGAGGGCAGAGGCCGCCATTTTAATCAGTGGAAATAAAATCCACGCATTTTATATATTTAATTTAACCCCCAATTTTAACTTAGCAGCACACTAGCTAGCTAGCTGCTAAGTTAACTATTTGATCAGGTTACAGTTGCTGGCCTGACAGTTAATTAATCTCTTGCTGGTTGATTAGTTGCTATCAGCTACACGCTCTCGCTAGCTGCCACTGTACTAATACATACTCCCATCTATTCGCCTGAGAAAATATCGAAAAGTAGCAGCAAAGA GGAGCAGGCAAGATGGTGATGAACCCTGACGCCGTCCGCAATGTCGTT GGAATCATC GGTAACTTGATAT CGTT CGGGTTGTTCTTGTC GCCATTG CCGACGTTCGTGACGAT CGTGAAGAAGAAGGACGTGGAGGAGTTCGTGCCGGATCCGTACCTGGCG ACGTTCCTCAACTGCGCGCTGTGGGTGTTCTACGGCCTACCCTTCATCCACCCCAACAGCATCCTCGTCGTCACCATCAACGGCACCGGACTCCTCATCGAGATCGCCTACCTCGCCATCTACTTCGCCTACGCCCCCAAGCCCAAGCGGTGCAGGATGCTCGGCGTCCTCACCGTGGAGCTCGTCTTCCTCGCCGCCGTCGCCGCCGGCGTGCTCCTCGGCGCCCACACCTACGACAAGCGCTCGCTCATCGTTGGCACCCTCTGCGTCTTCTTCGGCACCCTCATGTACGCCGCGCCGCTCACCATCATGAAACAAGTGATCGCGACAAAGAGCGTGGAGTACATGCCCTTCACGTTGTCGCTGGTGAGCTTCATCAACGGCATATGCTGGACAATATACGCGTTCATCCGCTTTGACATCCTCATCACGATACCGAACGGCATGGGGACGCTGCTGGGCGCGGCGCAGTTGATCCTCTACTTCTGCTACTACGACGGGTCGACGGCCAAGAACAAGGGCGCCCTCGAGCTGCCCAAGGACGGCGACTCCTCCGCTGTGTAGCTACATATGCTATATATCTTGCCATGCAAAGAACCACAAGATCGAAGCTAACACAAACCATGCAGCATATATGCACATCACACATGCAGTATCACAACGTACGCATGCTTGGATCTGCACGCACCACGCGCGCGTGCATGTAACTGTGACGGGTTATAATCGATCTGTTGGATGGATATGGATCATGGATGCAGGCAATGCAGCTGCTCTTCTGTTTGGACCCACTGAATTCGCCCGTGCATGCAGGCAGCTTCTTTGTGTGTGTACATATCCAACTATGCAAGAGGCAGGTATATGTGAGCA ]
[+] EMBL AU063858 [ TCCGACTCTCGTAAGATTAAGGGGGGAGGAATTGGAGGGCAGAGGCCGCCATTTTAATCAGTGGAAATAAAATCCACGCATTTTATATATTTAATTTAACCCCCAATTTTAACTTAGCAGCACACTAGCTAGCTAGCTGCTAAGTTAACTATTTGATCAGGTTACAGTTGCTGGCCTGACAGTTAATTAATCTCTTGCTGGTTGATTAGTTGCTATCAGCTACACGCTCTCGCTAGCTGCCACTGTACTAATACATACTCCCATCTATTCGCCTGAGAAAATATCGAAAAGTAGCAGCAAAGAGGGAGCAGGCAAGATGGTGATGAACCCTGACGNCGTCCGCAATGTCGTT GGGATCATC GGTAACTTGATAT CGTTCCGGGTTGTTCTTGTC GCCATTGCCCGACGGTCGTGACGNTCCGTGAAGAAGAAGGACGTGGAG ]
[+] EMBL C71967 [ TAAGATTAAGGGGGGAGGAATTGGAGGGCAGAGGCCGCCATTTTAATCAGTGGAAATAAAATCCACGCATTTTATATATTTAATTTAACCCCCAATTTTAACTTAGCAGCACACTAGCTAGCTAGCTGCTAAGTTAACTATTTGATCAGGTTACAGTTGCTGGCCTGACAGTTAATTAATCTCTTGCTGGTTGATTAGTTGCTATCAGCTACACGCTCTCGCTAGCTGCCACTGTACTAATACATACTCCCATCTATTCGCCTGAGAAAATATCGAAAAGTAGCAGCAAAGN GGAGCAGGCAAGATGGTGATG ACCCTGACGCCGTCCGNAATGTCGTTGGGAATCATCGGGTAACTTGATATCCGTC GGGGTTGTTCTTGTCGGCCATTG CCGACGGTCGTGACGNTCCGTTAAGA ]
[+] EMBL C72734 [ AACCCCCAATTTTAACTTAGCAGCACACTAGCTAGCTAGCTGCTAAGTTAACTATTTGATCAGGTTACAGTTGCTGGCCTGACAGTTAATTAATCTCTTGCTGGTTGATTAGTTGCTATCAGCTACACGCTCTCGCTAGCTGCCACTGTACTAATACATACTCCCATCTATTCGCCTGAGAAAATATCGAAAAGTAGCAGCAAAGA GGAGCAGGCAAGATGGTGATGAACCCTGACGCCGTCCGCAATGTCGTT GGAATCATC GGTAACTTGATAT CGTT CGGGTTGTTCTTGTC GCCATTG CCGACGTTCGTGACGAT CGTGAAGAAGAAGGACGTTGANGAGTTCGTGCCGGATCCGTACCTGGCGAANGTTC ]
[+] EMBL AU165439 [ AATATACGCGTTCATCCGCTTTGANATCCTCATCACGATACCGAACGGCATGGGGACGCTGCTGGGCGCGGCGCAGTTNATCCTCTACTTCTGCTACTACGACGGGTCGACGGCCAAGAACAAGGGCGCCCTCGAGCTGCCCAAGGACGGCGACTCCTCCGCTGTGTAGCTACATATGCTATATATCTTGCCATGCAAAGAACCACAAGATCGAAGCTAACACAAACCATGCAGCATATATGCACATCACACATGCAGTATCACAACGTACGCATGCTTGGATCTGCACGCACCACGCGCGCGTGCATGTAACTGTGACGGGTTATAATCGATCTGTTGGATGGATATGGATCATGGATGCAGGCAATGCAGCTGCTCTTCTGTTTGGACCCACTGAATTCGCCCGTGCATGCAGGCAGCTTCTTTGTGTGTGTACATATCCAACTATGCAAGAGGCAGGTATATGTGAGCAAAAGGCCCCNAAATGCAATGAGATCGATACACATGTTTGACTGTTCGTCTTAAAAAAAAAAAAAAAAAAAAAA]
consensusID : consensus_10517#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 453 fasta sequence
[CATCATGAAACAAGTGATCGCGACAAAGAGCGTGGAGTACATGCCCTTCACGTTGTCGCTGGTGAGCTTCATCAACGGCATATGCTGGACAATATACGCGTTCATCCGCTTTGACATCCTCATCACGATACCGAACGGCATGGGGACGCTGCTGGGCGCGGCGCAGTTGATCCTCTACTTCTGCTACTACGACGGGTCGACGGCCAAGAACAAGGGCGCCCTCGAGCTGCCCAAGGACGGCGACTCCTCCGCTGTGTAGCTACATATGCTATATATCTTGCCATGCAAAGAACCACAAGATCGAAGCTAACACAAACCATGCAGCATATATGCACATCACACATGCAGTATCACAACGTACGCATGCTTGGATCTGCACGCACCACGCGCGCGTGCATGTAACTGTGACGGGTTATAATCGATCTGTTGGATGGATAAAAAAAAAAAAAAAAA]
[+] EMBL AU165371 [CATCATGAAACAAGTGATCGCGACAAAGAGCGTGGAGTACATGCCCTTCACGTTGTCGCTGGTGAGCTTCATCAACGGCATATGCTGGACAATATACGCGTTCATCCGCTTTGACATCCTCATCACGATACCGAACGGCATGGGGACGCTGCTGGGCGCGGCGCAGTTGATCCTCTACTTCTGCTACTACGACGGGTCGACGGCCAAGAACAAGGGCGCCCTCGAGCTGCCCAAGGACGGCGACTCCTCCGCTGTGTAGCTACATATGCTATATATCTTGCCATGCAAAGAACCACAAGATCGAAGCTAACACAAACCATGCAGCATATATGCACATCACACATGCAGTATCACAACGTACGCATGCTTGGATCTGCACGCACCACGCGCGCGTGCATGTAACTGTGACGGGTTATAATCGATCTGTTGGATGGATAAAAAAAAAAAAAAAAA]
consensusID : consensus_10517#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 235 fasta sequence
[CTTGCCATGCAAAGAACCACAAGATCGAAGCTAACACAAACCATGCAGCATATATGCACATCACACATGCAGTATCACAACGTACGCATGCTTGGATCTGCACGCACCACGCGCGCGTGCATGTAACTGTGACGGGTTATAATCGATCTGTTGGATGGATATGGATCATGGATGCAGGCAATGCAGCTGCTCTTCTGTTTGGACCCAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]
[+] EMBL AU162183 [CTTGCCATGCAAAGAACCACAAGATCGAAGCTAACACAAACCATGCAGCATATATGCACATCACACATGCAGTATCACAACGTACGCATGCTTGGATCTGCACGCACCACGCGCGCGTGCATGTAACTGTGACGGGTTATAATCGATCTGTTGGATGGATATGGATCATGGATGCAGGCAATGCAGCTGCTCTTCTGTTTGGACCCAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_10517#0 CCTCTCCATTATTCCGACTCTCGTAAGATTAAGGGGGGAGGAATTGGAGGGCAGAGGCCG 60
consensus_10517#1 ------------------------------------------------------------
consensus_10517#2 ------------------------------------------------------------
consensus_10517#0 CCATTTTAATCAGTGGAAATAAAATCCACGCATTTTATATATTTAATTTAACCCCCAATT 120
consensus_10517#1 ------------------------------------------------------------
consensus_10517#2 ------------------------------------------------------------
consensus_10517#0 TTAACTTAGCAGCACACTAGCTAGCTAGCTGCTAAGTTAACTATTTGATCAGGTTACAGT 180
consensus_10517#1 ------------------------------------------------------------
consensus_10517#2 ------------------------------------------------------------
consensus_10517#0 TGCTGGCCTGACAGTTAATTAATCTCTTGCTGGTTGATTAGTTGCTATCAGCTACACGCT 240
consensus_10517#1 ------------------------------------------------------------
consensus_10517#2 ------------------------------------------------------------
consensus_10517#0 CTCGCTAGCTGCCACTGTACTAATACATACTCCCATCTATTCGCCTGAGAAAATATCGAA 300
consensus_10517#1 ------------------------------------------------------------
consensus_10517#2 ------------------------------------------------------------
consensus_10517#0 AAGTAGCAGCAAAGAGGAGCAGGCAAGATGGTGATGAACCCTGACGCCGTCCGCAATGTC 360
consensus_10517#1 ------------------------------------------------------------
consensus_10517#2 ------------------------------------------------------------
consensus_10517#0 GTTGGAATCATCGGTAACTTGATATCGTTCGGGTTGTTCTTGTCGCCATTGCCGACGTTC 420
consensus_10517#1 ------------------------------------------------------------
consensus_10517#2 ------------------------------------------------------------
consensus_10517#0 GTGACGATCGTGAAGAAGAAGGACGTGGAGGAGTTCGTGCCGGATCCGTACCTGGCGACG 480
consensus_10517#1 ------------------------------------------------------------
consensus_10517#2 ------------------------------------------------------------
consensus_10517#0 TTCCTCAACTGCGCGCTGTGGGTGTTCTACGGCCTACCCTTCATCCACCCCAACAGCATC 540
consensus_10517#1 ------------------------------------------------------------
consensus_10517#2 ------------------------------------------------------------
consensus_10517#0 CTCGTCGTCACCATCAACGGCACCGGACTCCTCATCGAGATCGCCTACCTCGCCATCTAC 600
consensus_10517#1 ------------------------------------------------------------
consensus_10517#2 ------------------------------------------------------------
consensus_10517#0 TTCGCCTACGCCCCCAAGCCCAAGCGGTGCAGGATGCTCGGCGTCCTCACCGTGGAGCTC 660
consensus_10517#1 ------------------------------------------------------------
consensus_10517#2 ------------------------------------------------------------
consensus_10517#0 GTCTTCCTCGCCGCCGTCGCCGCCGGCGTGCTCCTCGGCGCCCACACCTACGACAAGCGC 720
consensus_10517#1 ------------------------------------------------------------
consensus_10517#2 ------------------------------------------------------------
consensus_10517#0 TCGCTCATCGTTGGCACCCTCTGCGTCTTCTTCGGCACCCTCATGTACGCCGCGCCGCTC 780
consensus_10517#1 ------------------------------------------------------------
consensus_10517#2 ------------------------------------------------------------
consensus_10517#0 ACCATCATGAAACAAGTGATCGCGACAAAGAGCGTGGAGTACATGCCCTTCACGTTGTCG 840
consensus_10517#1 --CATCATGAAACAAGTGATCGCGACAAAGAGCGTGGAGTACATGCCCTTCACGTTGTCG 58
consensus_10517#2 ------------------------------------------------------------
consensus_10517#0 CTGGTGAGCTTCATCAACGGCATATGCTGGACAATATACGCGTTCATCCGCTTTGACATC 900
consensus_10517#1 CTGGTGAGCTTCATCAACGGCATATGCTGGACAATATACGCGTTCATCCGCTTTGACATC 118
consensus_10517#2 ------------------------------------------------------------
consensus_10517#0 CTCATCACGATACCGAACGGCATGGGGACGCTGCTGGGCGCGGCGCAGTTGATCCTCTAC 960
consensus_10517#1 CTCATCACGATACCGAACGGCATGGGGACGCTGCTGGGCGCGGCGCAGTTGATCCTCTAC 178
consensus_10517#2 ------------------------------------------------------------
consensus_10517#0 TTCTGCTACTACGACGGGTCGACGGCCAAGAACAAGGGCGCCCTCGAGCTGCCCAAGGAC 1020
consensus_10517#1 TTCTGCTACTACGACGGGTCGACGGCCAAGAACAAGGGCGCCCTCGAGCTGCCCAAGGAC 238
consensus_10517#2 ------------------------------------------------------------
consensus_10517#0 GGCGACTCCTCCGCTGTGTAGCTACATATGCTATATATCTTGCCATGCAAAGAACCACAA 1080
consensus_10517#1 GGCGACTCCTCCGCTGTGTAGCTACATATGCTATATATCTTGCCATGCAAAGAACCACAA 298
consensus_10517#2 --------------------------------------CTTGCCATGCAAAGAACCACAA 22
**********************
consensus_10517#0 GATCGAAGCTAACACAAACCATGCAGCATATATGCACATCACACATGCAGTATCACAACG 1140
consensus_10517#1 GATCGAAGCTAACACAAACCATGCAGCATATATGCACATCACACATGCAGTATCACAACG 358
consensus_10517#2 GATCGAAGCTAACACAAACCATGCAGCATATATGCACATCACACATGCAGTATCACAACG 82
************************************************************
consensus_10517#0 TACGCATGCTTGGATCTGCACGCACCACGCGCGCGTGCATGTAACTGTGACGGGTTATAA 1200
consensus_10517#1 TACGCATGCTTGGATCTGCACGCACCACGCGCGCGTGCATGTAACTGTGACGGGTTATAA 418
consensus_10517#2 TACGCATGCTTGGATCTGCACGCACCACGCGCGCGTGCATGTAACTGTGACGGGTTATAA 142
************************************************************
consensus_10517#0 TCGATCTGTTGGATGGATATGGATCATGGATGCAGGCAATGCAGCTGCTCTTCTGTTTGG 1260
consensus_10517#1 TCGATCTGTTGGATGGATAAAAAAAAAAAAAAAAA------------------------- 453
consensus_10517#2 TCGATCTGTTGGATGGATATGGATCATGGATGCAGGCAATGCAGCTGCTCTTCTGTTTGG 202
******************* * * * *
consensus_10517#0 ACCCACTGAATTCGCCCGTGCATGCAGGCAGCTTCTTTGTGTGTGTACATATCCAACTAT 1320
consensus_10517#1 ------------------------------------------------------------
consensus_10517#2 ACCCAAAAAAAAAAAAAAAAAAAAAAAAAAAAA--------------------------- 235
consensus_10517#0 GCAAGAGGCAGGTATATGTGAGCAAAAGGCCCCNAAATGCAATGAGATCGATACACATGT 1380
consensus_10517#1 ------------------------------------------------------------
consensus_10517#2 ------------------------------------------------------------
consensus_10517#0 TTGACTGTTCGTCTTAAAAAAAAAAAAAAAAAAAAAA 1417
consensus_10517#1 -------------------------------------
consensus_10517#2 -------------------------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||