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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_10519#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 1115 fasta sequence
[ACTTTCCCCACCAGCTCTCCTTTCCTTGTCTCCCCCGATTCAACTCCCCACCACCGGCCACCTCTAGTACATCGCCATGGTTCTTCCCTGCGTACTGGCCCCCCATCTCCGAGCTCCTTCCCTCCGTGCTGCCGCCCTCCCCGCTCTTCACCTCATGCGCAGCTTGAGCAGTCAACGGG-GCGGAGTGGCCTCGGCAGCGGCACGGAGTGTACTC-CGCGGCGGTGGTCTGCTTCCGGTCGGCCTCTCCTCCTTCCCTTCCAGCCGCCAAGGCGCA-TGTGAATTGGCGGGCGCCTCGTCGACATCATCTGCGGCATCGGCGCCATCACAGTGGCTTGATCT-GCGGTTGTTTCTTGGTCTCCACGCCACCGGCAA-CCTCCTGCAGTCAT-GGCGGCCGTCGATCCGCACCGTGCCTTCCGGATCCAGTGTTCGGCTGTGCGTAGGGCGCGAGCTGCTGTCCAGATTCGCTCAGGGCCTCCGATGGTGACGGCATGCGTCAGCTGTGTCAACGACGGCAAGCTTTCCCCTTCGTCGAGGCAGATCGGTTGTAGACGGCGGCTTGCGTCGAGGCAGGTCATTGCTTCTATCGATCGAGTTCTAGGTTGGCAGATTGTTCTTATTTTGTGTTTACTGGATCAGCTGGGCTGCAAGGTAGCGGTACTGGACGTGGTCATGTTCGTTGATATGGACTTCCAGAACAAGCTGATCGACAGCCTATCAAGGGAACCCCAAGGATTTGACACTGCTGGTGCAAAATACTCACTACAGGTAATATGTAGTATTATTAACTACACAACAGAGTAATATGTAAAATGCATACAACGGAGTTGTTGGATTACCTGGGATCGACATAGGCGCGGAACTCTCGGTGCCACACTTTGGACTGAGGGAGAGTTATGTGTTGTTTTGTCTTTTACCCAGTGCTAAGTGCTATAAGGCTGCATGTAATTCTTTGTTATGTGCTGTGATTTTTTATACTATGTATGTATATATGCACTTGTTCTCCTGGTGATGCTAACCGAATAGGACTTGGTATAATTCAAACCAAGTCCTATTCGGCCTAAACAGAAACAAAGTCCTAATCAGCCCAAACGGAAACGGATGGGAGTTTGTTTCCT]
[+] EMBL CF314396 [ACTTTCCCCACCAGCTCTCCTTTCCTTGTCTCCCCCGATTCAACTCCCCACCACCGGCCACCTCTAGTACATCGCCATGGTTCTTCCCTGCGTACTGGCCCCCCATCTCCGAGCTCCTTCCCTCCGTGCTGCCGCCCTCCCCGCTCTTCACCTCATGCGCAGCTTGAGCAGTCAACGGGNGCGGAGTGGCCTCGGCAGCGGCACGGAGTGTACTCNCGCGGCGGTGGTCTGCTTCCGGTCGGCCTCTCCTCCTTCCCTTCCAGCCGCCAAGGCGCA TGTGAATTGGCGGGCGCCTCGTCGACATCATCTGCGGCATCGGCGCCATCACAGTGGCTTGATCTNGCGGTTGTTTCTTGGTCTCCACGCCACCGGCAA CCTCCTGCAGTCAT GGCGGCCGTCGATCCGCACCGTGCCTTCCGGATCCAGTGTTCGGCTGTGCGTAGGGCGCGAGCTGCTGTCCAGATTCGCTCAGGGCCTCCGATGGTGACGGCATGCGTCAGCTGTGTCAACGACGGCAAGCTTTCCCCTTCGTCGAGGCAGATCGGTTGTAGACGGCGGCTTGCGTCGAGGCAGGTCATTGCTTCTATCG ]
[+] EMBL CF311270 [ACTTTCCCCACCAGCTCTCCTTTCCTTGTCTCCCCCGATTCAACTCCCCACCACCGGCCACCTCTAGTACATCGCCATGGTTCTTCCCTGCGTACTGGCCCCCCATCTCCGAGCTCCTTCCCTCCGTGCTGCCGCCCTCCCCGCTCTTCACCTCATGCGCAGCCTGAGCAGTCAACGGG GCGGAGTGGCCTCGGCAGCGGCACGGAGTGTACTC CGCGGCGGTGGTCTGCTTCCGGTCGGCCTCTCCTCCTTCCCTTCCAGCCGCCAAGGCGCA TGTGAATTGGCGGGCGCCTCGTCGACATCATCTGCGGCATCGGCGCCATCACAGTGGCTTGATCT GCGGTTGTTTCTTGGTCTCCACGCCACCGGCAA CCTCCTGCAGTCAT GGCGGCCGTCGATCCGCACCGTGCCTTCCGGATCCAGTGTTCGGCTGTGCGTANGGCGCGAGCTGCTGTCCAGATTCGCTCAGGGCCTCCGATGGTGACGGCATGCGTCAGCTGTGTCAACGACGGCAAGCTTTCCCCT ]
[+] EMBL C26257 [ GGCCACCTCTAGTACATCGCCATGGTTCTTCCCTGCGTACTGGCCCCCCATCTCCGAGCTCCTTCCCTCCGTGCTGCCGCCCTCCCCGCTCTTCACCTCATGCGCAG TTGAGCAGTCAACGGG GCGGAGTGGCCTCGGCAGCGGCACGGAGT TACTC CGCGGCGGTGGTCTGCTTCCGGTCGGCCTCTCCTCCTTCCCTTCCAGCCGCCAAGG GCANTGTGAATTGGCGGGCG CTCGTCGACATCATCTGCGGCATCGGCG CATCACAGTGGCTTGATCT GCGGTTGTTTCTTGGTCTCCACGNCANCGGAAACCCTNCTGCAGTCATGGGCGGCCGTCGATCCGCAACGTGCCTTTCGG ]
[+] EMBL AK103773 [ GCCATGGTTCTTCCCTGCGTACTGGCCCCCCATCTCCGAGCTCCTTCCCTCCGTGCTGCCGCCCTCCCCGCTCTTCACCTCATGCGCAGCTTGAGCAGTCAACGGG GCGGAGTGGCCTCGGCAGCGGCACGGAGTGTACTC CGCGGCGGTGGTCTGCTTCCGGTCGGCCTCTCCTCCTTCCCTTCCAGCCGCCAAGGCGCA TGTGAATTGGCGGGCGCCTCGTCGACATCATCTGCGGCATCGGCGCCATCACAGTGGCTTGATCT GCGGTTGTTTCTTGGTCTCCACGCCACCGGCAA CCTCCTGCAGTCAT GGCGGCCGTCGATCCGCACCGTGCCTTCCGGATCCAGTGTTCGGCTGTGCGTAGGGCGCGAGCTGCTGTCCAGATTCGCTCAGGGCCTCCGATGGTGACGGCATGCGTCAGCTGTGTCAACGACGGCAAGCTTTCCCCTTCGTCGAGGCAGATCGGTTGTAGACGGCGGCTTGCGTCGAGGCAGGTCATTGCTTCTATCGATCGAGTTCTAGGTTGGCAGATTGTTCTTATTTTGTGTTTACTGGATCAGCTGGGCTGCAAGGTAGCGGTACTGGACGTGGTCATGTTCGTTGATATGGACTTCCAGAACAAGCTGATCGACAGCCTATCAAGGGAACCCCAAGGATTTGACACTGCTGGTGCAAAATACTCACTACAGGTAATATGTAGTATTATTAACTACACAACAGAGTAATATGTAAAATGCATACAACGGAGTTGTTGGATTACCTGGGATCGACATAGGCGCGGAACTCTCGGTGCCACACTTTGGACTGAGGGAGAGTTATGTGTTGTTTTGTCTTTTACCCAGTGCTAAGTGCTATAAGGCTGCATGTAATTCTTTGTTATGTGCTGTGATTTTTTATACTATGTATGTATATATGCACTTGTTCTCCTGGTGATGCTAACCGAATAGGACTTGGTATAATTCAAACCAAGTCCTATTCGGCCTAAACAGAAACAAAGTCCTAATCAGCCCAAACGGAAACGGATGGGAGTTTGTTTCCT]
[-] EMBL CF314397 [ GTTCGGCTGTGCGTAGGGCGCGAGCTGCTGTCCAGATTCGCTCAGGGCCTCCGATGGTGACGGCATGCGTCAGCTGTGTCAACGACGGCAAGCTTTCCCCTTCGTCGAGGCAGATCGGTTGTAGACGGCGGCTTGCGTCGAGGCAGGTCATTGCTTCTATCGATCGAGTTCTAGGTTGGCAGATTGTTCTTATTTTGTGTTTACTGGATCAGCTGGGCTGCAAGGTAGCGGTACTGGACGTGGTCATGTTCGTTGATATGGACTTCCAGAACAAGCTGATCGACAGCCTATCAAGGGAACCCCAAGGATTTGACACTGCTGGTGCAAAATACTCACTACAGGTAATATGTAGTATTATTAACTACACAACAGAGTAATATGTAAAATGCATACAACGGAGTTGTTGGATTACCTGGGATCGACATAGGCGCGGAACTCTCGGTGCCACACTTTGGACTGAGGGAGAGTTATGTGTTGTTTTGTCTTTTACCCAGTGCTAAGTGCTATAAGGCTGCATGTAATTCTTTGTTATGTGCTGTGATTTTTTATACTATGTATGTATATATGCAaaaaa ]
consensusID : consensus_10519#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 565 fasta sequence
[CGGCCGTCGATCCGCACCGTGCCTTCCGGATCCAGTGTTCGGCTGTGCGTAGGGCGCGAGCTGCTGTCCAGATTCGCTCAGGGCCTCCGATGGTGACGGCATGCGTCAGCTGTGTCAACGACGGCAAGCTTTCCCCTTCGTCGAGGCAGATCGGTTGTAGACGGCGGCTTGCGTCGAGGCAGGTCATTGCTTCTATCGATCGAGCTGGGCTGCAAGGTAGCGGTACTGGACGTGGTCATGTTCGTTGATATGGACTTCCAGAACAAGCTGATCGACAGCCTATCAAGGGAACCCCAAGGATTTGACACTGCTGGTGCAAAATACTCACTACAGGTAATATGTAGTATTATTAACTACACAACAGAGTAATATGTAAAATGCATACAACGGAGTTGTTGGATTACCTGGGATCGACATAGGCGCGGAACTCTCGGTGCCACACTTTGGACTGAGGGAGAGTTATGTGTTGTTTTGTCTTTTACCCAGTGCTAAGTGCTATAAGGCTGCATGTAATTCTTTGTTATGTGCTGTGATTTTTTATACTATGTATGTATATAAAAAAAAA]
[-] EMBL CF311271 [CGGCCGTCGATCCGCACCGTGCCTTCCGGATCCAGTGTTCGGCTGTGCGTAGGGCGCGAGCTGCTGTCCAGATTCGCTCAGGGCCTCCGATGGTGACGGCATGCGTCAGCTGTGTCAACGACGGCAAGCTTTCCCCTTCGTCGAGGCAGATCGGTTGTAGACGGCGGCTTGCGTCGAGGCAGGTCATTGCTTCTATCGATCGAGCTGGGCTGCAAGGTAGCGGTACTGGACGTGGTCATGTTCGTTGATATGGACTTCCAGAACAAGCTGATCGACAGCCTATCAAGGGAACCCCAAGGATTTGACACTGCTGGTGCAAAATACTCACTACAGGTAATATGTAGTATTATTAACTACACAACAGAGTAATATGTAAAATGCATACAACGGAGTTGTTGGATTACCTGGGATCGACATAGGCGCGGAACTCTCGGTGCCACACTTTGGACTGAGGGAGAGTTATGTGTTGTTTTGTCTTTTACCCAGTGCTAAGTGCTATAAGGCTGCATGTAATTCTTTGTTATGTGCTGTGATTTTTTATACTATGTATGTATATAAAAAAAAA]
consensusID : consensus_10519#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 393 fasta sequence
[CGAATCAACGGTTGGGAGGCCCCCGCGACGTGCGACGGCCCCCCTCACTCCCGCGACGCGCGCGGTGGAGTCCTCCCCCACCACCGACGGTGCGCCGCGCTCTCCCCCACCACCGGAGAGTGCCCTCTCCGCCGCCGCCGCCGGATCTAGCGGGAGGGGAGCGCGCGCGGTGCTCTCCCCTCCACCGGATCCACAGCGACGGCGACGCGCCGGTTCGGCAACGACGGCGACGCGCACGCGGCGACCCCCTTCGATCTAATTTTTGTTTTATTGGATATATGTGTCTGCGCGACCCCTTTCGATCTAATTTTTTTTTTTTCCAAAGTGCTATAAAGCTGCATGTGATTCTTTGTTATGTGCTATGATTTTTTATACTATGTATGTATATAAAAA]
[+] EMBL BI800309 [CGAATCAACGGTTGGGAGGCCCCCGCGACGTGCGACGGCCCCCCTCACTCCCGCGACGCGCGCGGTGGAGTCCTCCCCCACCACCGACGGTGCGCCGCGCTCTCCCCCACCACCGGAGAGTGCCCTCTCCGCCGCCGCCGCCGGATCTAGCGGGAGGGGAGCGCGCGCGGTGCTCTCCCCTCCACCGGATCCACAGCGACGGCGACGCGCCGGTTCGGCAACGACGGCGACGCGCACGCGGCGACCCCCTTCGATCTAATTTTTGTTTTATTGGATATATGTGTCTGCGCGACCCCTTTCGATCTAATTTTTTTTTTTTCCAAAGTGCTATAAAGCTGCATGTGATTCTTTGTTATGTGCTATGATTTTTTATACTATGTATGTATATAAAAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_10519#0 ACTTTCCCCACCAGCTCTCCTTTCCTTGTCTCCCCCGATTCAACTCCCCACCACCGGCCA 60
consensus_10519#1 ------------------------------------------------------------
consensus_10519#2 ------------------------------------------------------------
consensus_10519#0 CCTCTAGTACATCGCCATGGTTCTTCCCTGCGTACTGGCCCCCCATCTCCGAGCTCCTTC 120
consensus_10519#1 ------------------------------------------------------------
consensus_10519#2 ------------------------------------------------------------
consensus_10519#0 CCTCCGTGCTGCCGCCCTCCCCGCTCTTCACCTCATGCGCAGCTTGAGCAGTCAACGGGG 180
consensus_10519#1 ------------------------------------------------------------
consensus_10519#2 ------------------------------------------------------------
consensus_10519#0 CGGAGTGGCCTCGGCAGCGGCACGGAGTGTACTCCGCGGCGGTGGTCTGCTTCCGGTCGG 240
consensus_10519#1 ------------------------------------------------------------
consensus_10519#2 ------------------------------------------------------------
consensus_10519#0 CCTCTCCTCCTTCCCTTCCAGCCGCCAAGGCGCATGTGAATTGGCGGGCGCCTCGTCGAC 300
consensus_10519#1 ------------------------------------------------------------
consensus_10519#2 ------------------------------------------------------------
consensus_10519#0 ATCATCTGCGGCATCGGCGCCATCACAGTGGCTTGATCTGCGGTTGTTTCTTGGTCTCCA 360
consensus_10519#1 ------------------------------------------------------------
consensus_10519#2 ------------------------------------------------------------
consensus_10519#0 CGCCACCGGCAACCTCCTGCAGTCATGGCGGCCGTCGATCCGCACCGTGCCTTCCGGATC 420
consensus_10519#1 ----------------------------CGGCCGTCGATCCGCACCGTGCCTTCCGGATC 32
consensus_10519#2 ------------------------------------------------------------
consensus_10519#0 CAGTGTTCGGCTGTGCGTAGGGCGCGAGCTGCTGTCCAGATTCGCTCAGGGCCTCCGATG 480
consensus_10519#1 CAGTGTTCGGCTGTGCGTAGGGCGCGAGCTGCTGTCCAGATTCGCTCAGGGCCTCCGATG 92
consensus_10519#2 ------------------------------------------------------------
consensus_10519#0 GTGACGGCATGCGTCAGCTGTGTCAACGACGGCAAGCTTTCCCCTTCGTCGAGGCAGATC 540
consensus_10519#1 GTGACGGCATGCGTCAGCTGTGTCAACGACGGCAAGCTTTCCCCTTCGTCGAGGCAGATC 152
consensus_10519#2 ------------------CGAATCAACGGTTGGGAGGCCCCCGCGACGT-GCGACGGCCC 41
* ****** * ** ** * *** * * * * *
consensus_10519#0 GGTTGTAGACGGCGGCTTGCGTCGAGGCAGGTCATTGCTTCTATCGATCGAGTTCTAGGT 600
consensus_10519#1 GGTTGTAGACGGCGGCTTGCGTCGAGGCAGGTCATTGCTTCTATCGATCGAG-------- 204
consensus_10519#2 CCCTCACTCCCGCGACGCGCG-CGGTGGAGTCCTCCCCCACCACCGACGGTGC------- 93
* * *** * *** ** * ** * * * * *** * *
consensus_10519#0 TGGCAGATTGTTCTTATTTTGTGTTTACTGGATCAGCTGGGCTGCAAGGTAGCGGTACTG 660
consensus_10519#1 ------------------------------------CTGGGCTGCAAGGTAGCGGTACTG 228
consensus_10519#2 -----------------------------------GCCGCGCTCT---CCCCCACCACCG 115
* * *** * ** *
consensus_10519#0 GACGTGGTCATGTTCGTTGATATGGACTTCCAGAACAAGCTGATCGACAGCCTATCAAGG 720
consensus_10519#1 GACGTGGTCATGTTCGTTGATATGGACTTCCAGAACAAGCTGATCGACAGCCTATCAAGG 288
consensus_10519#2 GAGAGTGCCCTCTCCGCCGCCG----CCGCCGGATCTAGCGGGAGGGGAGCGCGCGCGGT 171
** * * * * ** * * ** ** * *** * * *** *
consensus_10519#0 GAACCCCAAGGATTTGACACTGCTGGTGCAAAATACTCACTACAGGTAATATGTAGTATT 780
consensus_10519#1 GAACCCCAAGGATTTGACACTGCTGGTGCAAAATACTCACTACAGGTAATATGTAGTATT 348
consensus_10519#2 GCTCTCCC---------CTCCACCGG------ATCCACAGCGACGGCGACGCGCCGGTTC 216
* * ** * * * ** ** * ** ** * * * *
consensus_10519#0 ATTAACTACACAACAGAGTAATATGTAAAATGCATACAACGGAGTTGTTGGATTACCTGG 840
consensus_10519#1 ATTAACTACACAACAGAGTAATATGTAAAATGCATACAACGGAGTTGTTGGATTACCTGG 408
consensus_10519#2 GGCAACGACGGCGACGCGCA-CGCGGCGACCCCCTTCGATCTAATTTTTGTTTTAT---- 271
*** ** * * * * * * * * * * ** *** ***
consensus_10519#0 GATCGACATAGGCGCGGAACTCTCGGTGCCACACTTTGGACTGAGGGAGAGTTATGTGTT 900
consensus_10519#1 GATCGACATAGGCGCGGAACTCTCGGTGCCACACTTTGGACTGAGGGAGAGTTATGTGTT 468
consensus_10519#2 --TGGATATATGTG------TCTGCGCGACCCCTTTCGATCTAA---------------- 307
* ** *** * * *** * * * * ** * ** *
consensus_10519#0 GTTTTGTCTTTTACCCAGTGCTAAGTGCTATAAGGCTGCATGTAATTCTTTGTTATGTGC 960
consensus_10519#1 GTTTTGTCTTTTACCCAGTGCTAAGTGCTATAAGGCTGCATGTAATTCTTTGTTATGTGC 528
consensus_10519#2 --TTTTTTTTTTTTCCA-----AAGTGCTATAAAGCTGCATGTGATTCTTTGTTATGTGC 360
*** * **** *** *********** ********* ****************
consensus_10519#0 TGTGATTTTTTATACTATGTATGTATATATGCACTTGTTCTCCTGGTGATGCTAACCGAA 1020
consensus_10519#1 TGTGATTTTTTATACTATGTATGTATATAAAAAAAAA----------------------- 565
consensus_10519#2 TATGATTTTTTATACTATGTATGTATATAAAAA--------------------------- 393
* *************************** *
consensus_10519#0 TAGGACTTGGTATAATTCAAACCAAGTCCTATTCGGCCTAAACAGAAACAAAGTCCTAAT 1080
consensus_10519#1 ------------------------------------------------------------
consensus_10519#2 ------------------------------------------------------------
consensus_10519#0 CAGCCCAAACGGAAACGGATGGGAGTTTGTTTCCT 1115
consensus_10519#1 -----------------------------------
consensus_10519#2 -----------------------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||