cluster # 10520

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Oryza sativa
cluster # 10520 cluster # 10520 Sequences # 7 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_10520#0 length = 776 sequences # 6

consensus_10520#1 length = 213 sequences # 1

consensusID : consensus_10520#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 6
consensus length = 776
fasta sequence

                              [CCACAAGCCAAGAAGCTGCAAGAGCAAGCCAAGCCAAGCCAAGAACGAAGCAGCAGCGAGAGCGAGGTGAGCAGCGAGCATGGCGGGCGAGGCGGCGGCGGCGGAGCGGTGGGTGGGGG-CGGCGGTGGACTTCTCGGAGGGGAGCCGCGCGGCGCTGCGGTGGGCGGCGGACAACCTGCTCCGCGCCGGCGACCACCTCATCCTCCTCCACGTCCTCAAGGACCCCGACTACGAGCAGGGCGAGACCCTCCTCTGGGAGGCCACCGGCTCCCCATTGATTCCCCTCTCGGATTTCTCTGAACCTACAATTGCAAAGAAATATGGAGCAAAGCCTGATGCCGAAACATTGGACATGCTTAATACTGTGGCCAGGCAGAAGGAGGTTGTGGTGGTTTTCAAAGTCCTTTGGGGAGATCCCCGTGAGAAGCTATGCCAAGCCATCAACGAAATCCCCATGAGCTGCTTGGTTATTGGAAGCAGGGGTCTTGGCAAACTCAAGAGGGTGCTGTTAGGTAGCGTCAGCGACTACGTCGTGAACAACGCCACTTGCCCAGTCACAGTTGTCAAGACAGCCGATGGTTGATCCTATTGTCATAAATATCCATGTGTTATATAGTCTGCTTAAATCTTTGTCCATCTATCTGAAACATATTGAACCACCATGCAGTGTAATTGTAATAATAAACGAAGTCAACTGAAGACGCTCAGTTGTACTTTGTGCTTGCACTCTCTGAGCCTGACTATGAAATGGATCCTGCTGTTTTTCTTAAAAAAAA]

[+] EMBL AK103075             [CCACAAGCCAAGAAGCTGCAAGAGCAAGCCAAGCCAAGCCAAGAACGAAGCAGCAGCGAGAGCGAGGTGAGCAGCGAGCATGGCGGGCGAGGCGGCGGCGGCGGAGCGGTGGGTGGGGG CGGCGGTGGACTTCTCGGAGGGGAGCCGCGCGGCGCTGCGGTGGGCGGCGGACAACCTGCTCCGCGCCGGCGACCACCTCATCCTCCTCCACGTCCCCAAGGACCCCGACTACGAGCAGGGCGAGACCCTCCTCTGGGAGGCCACCGGCTCCCCATTGATTCCCCTCTCGGATTTCTCTGAACCTACAATTGCAAAGAAATATGGAGCAAAGCCTGATGCCGAAACATTGGACATGCTTAATACTGTGGCCAGGCAGAAGGAGGTTGTGGTGGTTTTCAAAGTCCTTTGGGGAGATCCCCGTGAGAAACTATGCCAAGCCATCAACGAAATCCCCATGAGCTGCTTGGTTATTGGAAGCAGGGGTCTTGGCAAACTCAAGAGGGTGCTGTTAGGTAGCGTCAGCGACTACGTCGTGAACAACGCCACTTGCCCAGTCACAGTTGTCAAGACAGCCGATGGTTGATCCTATTGTCATAAATATCCATGTGTTATATAGTCTGCTTAAATCTTTGTCCATCTATCTGAAACATATTGAACCACCATGCAGTGTAATTGTAATAATAAACGAAGTCAACTGAAGACGCTCAGTTGTACTTTGTGCTTGCACTCTCTGAGCCTGACTATGAAATGGATCCTGCTGT               ]
[+] EMBL AK065771             [CCACAAGCCAAGAAGCTGCAAGAGCAAGCCAAGCCAAGCCAAGAACGAAGCAGCAGCGAGAGCGAGGTGAGCAGCGAGCATGGCGGGCGAGGCGGCGGCGGCGGAGCGGTGGGTGGGGG CGGCGGTGGACTTCTCGGAGGGGAGCCGCGCGGCGCTGCGGTGGGCGGCGGACAACCTGCTCCGCGCCGGCGACCACCTCATCCTCCTCCACGTCCTCAAGGACCCCGACTACGAGCAGGGCGAGACCCTCCTCTGGGAGGCCACCGGCTCCCCATTGATTCCCCTCTCGGATTTCTCTGAACCTACAATTGCAAAGAAATATGGAGCAAAGCCTGATGCCGAAACATTGGACATGCTTAATACTGTGGCCAGGCAGAAGGAGGTTGTGGTGGTTTTCAAAGTCCTTTGGGGAGATCCCCGTGAGAAGCTATGCCAAGCCATCAACGAAATCCCCATGAGCTGCTTGGTTATTGGAAGCAGGGGTCTTGGCAAACTCAAGAGGGTGCTGTTAGGTAGCGTCAGCGACTACGTCGTGAACAACGCCACTTGCCCAGTCACAGTTGTCAAGACAGCCGATGGTTGATCCTATTGTCATAAATATCCATGTGTTATATAGTCTGCTTAAATCTTTGTCCATCTATCTGAAACATATTGAACCACCATGCAGTGTAATTGTAATAATAAACGAAGTCAACTGAAGACGCTCAGTTGTACTTTGTGCTTGCACTCTCTGAGCCTGACTATGAAATGGATCCTGC                  ]
[+] EMBL AU166753             [                                                      AGCGAGAGCGAGGTGAGCAGCGAGCATGGCGGGCGAGGCGGCGGCGGCGGAGCGGTGGGTGGGGGCCGGCGGTGGACTTCTCGGAGGGGAGCCGCGCGGCGCTGCGGTGGGCGGCGGACAACCTGCTCCGCGCCGGCGACCACCTCATCCTCCTCCACGTCCTCAAGGACCCCGACTACGAGCAGGGCGAGACCCTCCTCTGGGAGGCCACCGGCTCCCCATTGATTCCCCTCTCGGATTTCTCTGAACCTACAATTGCAAAGAAATATGGAGCAAAGCCTGATGCCGAAACATTGGACATGCTTAATACTGTGGCCAGGCAGAAGGAGGTTGTGGTGGTTTTCAAAGTCCTTTGGGGAGATCCCCGTGAGAAGCTATGCCAAGCCATCAACGAAATCCCCATGAGCTGCTTGGTTATTGGAAGCAGGGGTC                                                                                                                                                                                                                                                                                                   ]
[+] EMBL AU166754             [                                                                                                                                                                                                                                                                                                                                                 TGCCGAAACATTGGACATGCTTAATACTGTGGCCAGGCAGAAGGAGGTTGTGGTGGTTTTCAAAGTCCTTTGGGGAGATCCCCGTGAGAAGCTATGCCAAGCCATCAACGAAATCCCCATGAGCTGCTTGGTTATTGGAAGCAGGGGTCTTGGCAAACTCAAGAGGGTGCTGTTAGGTAGCGTCAGCGACTACGTCGTGAACAACGCCACTTGCCCAGTCACAGTTGTCAAGACAGCCGATGGTTGATCCTATTGTCATAAATATCCATGTGTTATATAGTCTGCTTAAATCTTTGTCCATCTATCTGAAACATATTGAACCACCATGCAGTGTAATTGTAATAATAAACGAAGTCAACTGAAGACGCTCAGTTGTACTTTGTGCTTGCACTCTCTGAGCCTGACTATGAAATGGATCCTGCTGTTTTTCTTAAAAAAAA]
[+] EMBL CF326849             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                       GTACTTTGTGCTTGCACTCTCTGAGCCTGACTATGAAATGGATCCTGCTGTTTTTCTTAAAAA   ]
[-] EMBL CF326848             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        TACTTTGTGCTTGCACTCTCTGAGCCTGACTATGAAATGGATCCTGCTGTTTTTCTTAAAAAA  ]




>consensus_10520#0
CCACAAGCCAAGAAGCTGCAAGAGCAAGCCAAGCCAAGCCAAGAACGAAGCAGCAGCGAG
AGCGAGGTGAGCAGCGAGCATGGCGGGCGAGGCGGCGGCGGCGGAGCGGTGGGTGGGGGC
GGCGGTGGACTTCTCGGAGGGGAGCCGCGCGGCGCTGCGGTGGGCGGCGGACAACCTGCT
CCGCGCCGGCGACCACCTCATCCTCCTCCACGTCCTCAAGGACCCCGACTACGAGCAGGG
CGAGACCCTCCTCTGGGAGGCCACCGGCTCCCCATTGATTCCCCTCTCGGATTTCTCTGA
ACCTACAATTGCAAAGAAATATGGAGCAAAGCCTGATGCCGAAACATTGGACATGCTTAA
TACTGTGGCCAGGCAGAAGGAGGTTGTGGTGGTTTTCAAAGTCCTTTGGGGAGATCCCCG
TGAGAAGCTATGCCAAGCCATCAACGAAATCCCCATGAGCTGCTTGGTTATTGGAAGCAG
GGGTCTTGGCAAACTCAAGAGGGTGCTGTTAGGTAGCGTCAGCGACTACGTCGTGAACAA
CGCCACTTGCCCAGTCACAGTTGTCAAGACAGCCGATGGTTGATCCTATTGTCATAAATA
TCCATGTGTTATATAGTCTGCTTAAATCTTTGTCCATCTATCTGAAACATATTGAACCAC
CATGCAGTGTAATTGTAATAATAAACGAAGTCAACTGAAGACGCTCAGTTGTACTTTGTG
CTTGCACTCTCTGAGCCTGACTATGAAATGGATCCTGCTGTTTTTCTTAAAAAAAA

consensusID : consensus_10520#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 213
fasta sequence

                              [CCCAGTCACAGTTGTCAAGACAGCCGATGGTTGATCCTATTGTCATAAATATCCATGTGTTATATAGTCTGCTTAAATCTTTGTCCATCTATCTGAAACATATTGAACCACCATGCAGTGTAATTGTAATAATAAACGAAGTCAACTGAAGACGCTCAGTTGTACTTTGTGCTTGCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]

[+] EMBL AU078669             [CCCAGTCACAGTTGTCAAGACAGCCGATGGTTGATCCTATTGTCATAAATATCCATGTGTTATATAGTCTGCTTAAATCTTTGTCCATCTATCTGAAACATATTGAACCACCATGCAGTGTAATTGTAATAATAAACGAAGTCAACTGAAGACGCTCAGTTGTACTTTGTGCTTGCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]




>consensus_10520#1
CCCAGTCACAGTTGTCAAGACAGCCGATGGTTGATCCTATTGTCATAAATATCCATGTGT
TATATAGTCTGCTTAAATCTTTGTCCATCTATCTGAAACATATTGAACCACCATGCAGTG
TAATTGTAATAATAAACGAAGTCAACTGAAGACGCTCAGTTGTACTTTGTGCTTGCAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_10520#0      CCACAAGCCAAGAAGCTGCAAGAGCAAGCCAAGCCAAGCCAAGAACGAAGCAGCAGCGAG 60
consensus_10520#1      ------------------------------------------------------------
                                                                                   

consensus_10520#0      AGCGAGGTGAGCAGCGAGCATGGCGGGCGAGGCGGCGGCGGCGGAGCGGTGGGTGGGGGC 120
consensus_10520#1      ------------------------------------------------------------
                                                                                   

consensus_10520#0      GGCGGTGGACTTCTCGGAGGGGAGCCGCGCGGCGCTGCGGTGGGCGGCGGACAACCTGCT 180
consensus_10520#1      ------------------------------------------------------------
                                                                                   

consensus_10520#0      CCGCGCCGGCGACCACCTCATCCTCCTCCACGTCCTCAAGGACCCCGACTACGAGCAGGG 240
consensus_10520#1      ------------------------------------------------------------
                                                                                   

consensus_10520#0      CGAGACCCTCCTCTGGGAGGCCACCGGCTCCCCATTGATTCCCCTCTCGGATTTCTCTGA 300
consensus_10520#1      ------------------------------------------------------------
                                                                                   

consensus_10520#0      ACCTACAATTGCAAAGAAATATGGAGCAAAGCCTGATGCCGAAACATTGGACATGCTTAA 360
consensus_10520#1      ------------------------------------------------------------
                                                                                   

consensus_10520#0      TACTGTGGCCAGGCAGAAGGAGGTTGTGGTGGTTTTCAAAGTCCTTTGGGGAGATCCCCG 420
consensus_10520#1      ------------------------------------------------------------
                                                                                   

consensus_10520#0      TGAGAAGCTATGCCAAGCCATCAACGAAATCCCCATGAGCTGCTTGGTTATTGGAAGCAG 480
consensus_10520#1      ------------------------------------------------------------
                                                                                   

consensus_10520#0      GGGTCTTGGCAAACTCAAGAGGGTGCTGTTAGGTAGCGTCAGCGACTACGTCGTGAACAA 540
consensus_10520#1      ------------------------------------------------------------
                                                                                   

consensus_10520#0      CGCCACTTGCCCAGTCACAGTTGTCAAGACAGCCGATGGTTGATCCTATTGTCATAAATA 600
consensus_10520#1      ---------CCCAGTCACAGTTGTCAAGACAGCCGATGGTTGATCCTATTGTCATAAATA 51
                                ***************************************************

consensus_10520#0      TCCATGTGTTATATAGTCTGCTTAAATCTTTGTCCATCTATCTGAAACATATTGAACCAC 660
consensus_10520#1      TCCATGTGTTATATAGTCTGCTTAAATCTTTGTCCATCTATCTGAAACATATTGAACCAC 111
                       ************************************************************

consensus_10520#0      CATGCAGTGTAATTGTAATAATAAACGAAGTCAACTGAAGACGCTCAGTTGTACTTTGTG 720
consensus_10520#1      CATGCAGTGTAATTGTAATAATAAACGAAGTCAACTGAAGACGCTCAGTTGTACTTTGTG 171
                       ************************************************************

consensus_10520#0      CTTGCACTCTCTGAGCCTGACTATGAAATGGATCCTGCTGTTTTTCTTAAAAAAAA 776
consensus_10520#1      CTTGCAAAAAAAAAAAAAAAAAAAAAAAAAAAAA--------------AAAAAAAA 213
                       ******       *     *  *  ***   *                ********