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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_10541#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 6 consensus length = 4033 fasta sequence
[AGTTAGCCACTCTATTACTACTACCTCCGTTGCCAACGCCGGAATCCATCCATCCATCCCCGCGCCGCGCTGTGCCGCCGCGAGAGCTTTGCGGCGGGCATGCGGGTGGGGATTCACCGCGGGGTGGAAGAAGCTGAAGCAGCAGCTGGTGGCGCAACGCCACGAGGCGCACCCCGCTGGCACCCACACCAACAAAAGGAGAAGATTCTCGCCACCACCACTCCCACTGATCCCCTCTTCTTCCTCCTCGTTCGCCTGCCATCTCCGGAGCCGGAGGAGGAGGAGGAGTAGCCGCCGCCCAGATCTGCGCCGCCATGCTGCCGCTGCTGCGGAGGCGGCGGCTGTGAATAGCTAGGTCGTTTTTATTGTTGTTTTTGGGTTGGTTTGGTTTGATTCCGATGGGGTGCGGGCAGTCGAAGATGGAGGAGGAGTACGCGGTGCGGCACTGCAGGGAGAGGTCGGAGCTGCTCGCCCTCGCCATCCGCCACCGCTACGCGCTCGCCGACACCCACCGTGCCTACGCCGAATCCCTCGCCGCCGTCGGCGCCGTGCTCCACGACTTCCTCCGCGGCGTCCAGTCGCTGCCCCCGCCGCCGCTCGAGCCCACGCTCCGCCTTCCCGCCCACCGCAAGGGCGACAACCTCCCCACCGCCTCCCCCGTCCCGGCCAACCCCGCCATCGCCTCCTCCTCCGCCGCCCAGCCGCTGCCGCCCGTCGCCAAGCAGGTACGAATCGCCGCCGCCCCCGATGACGGCGGCGGCGGCGGCCACATCCACTTCTCGGACGACGACTCCGATTCCGAGGGCGGCGGGCACATCAAGTTCCACTCCGACGACGAGGGCGACGCGCCCGCTCACCGCCGCCCAGAGATCGTCCGCTCCGCCGCGCCGCCGGTGGCTCCGCCGCCGCAGATGGGGCCACCACCACCGTATGGCTCCGGATATGCTCCTCCTCCGCCTTATGGTTCGGGATACGGGTATGGATACGGCCCCGCCCCCGATTACGGCGGCGGCATGGCCGTTGCCAACGGCGGCTATGACCCAGGGTATGGTGGTATGGGCGGAGCCAGTGGCGGCGGCGGCGGCGGCGGCTATGCGCCTGGATATGGAGGCATGGGAGTTGGGGATGGCGGCAGCGGTGGCGGCTATGAGCCAGCCTATGGCGGCATGGGCAGCTATGGCCAAAGCTTCTTCAACATCAGCTATGCGCGCAGCCAGCCGCCTCCGCCGTCCGTCTCATACGAGCACCGGCTGCAGGCCACCGATGCCAGGGTCCACTACTACGCCGGAGAAGGCAACCCTCAAGCACCCCCACTCGGGTATGGCGGTGGGTATGGTTATCCGCCGCAGGGCTCGAGCTCTTACAACCAGTATGCGTACGGTGGTTACTATGGTGGTGCTTCTCCTCCGCCTCCGGCCGATATACCTTCTACCTCCCGCGGGGAGGTTACGCCACCGGCACCTCCATCTCCGCCGAGGGTGTCTACTTGGGACTTCCTGAACCCATTTGAAACCTATGAGAGCTACTATGAGCAGCCAACTGCTGCTCAAGCGTCATACACTCCCAGCAGAAGTTCCAAGGATGTGCGTGAGGAGGAAGGCATACCAGATTTGGAGGATGAGGATATGGAGGTGGTTAAGGAAGCTTATGGTGATGAGAAGCACGCCGCCAATGGGTACAGTGGCAAGGGGAAGATGGCAAAAGAGGAAGGTGGTAGGAGCAGCACCGGGGATGAACTGCCCCATGAATCCAAGTTATCGGAAGCGAGCAGTAGCGGGAGCAACCAGGAGCATGATGTCCATGTAGTGGAGAAGAGTGTTGTGGGAGAACAGGTGCAGCGGTCAGAGCCTCGTCAGCATGTCGCAGGCCTGCCGCCCATAGGATCGGAGAAGACGTACTTTGATGATGCTGAGGTGGTGCTGGAGATCAGGACTCAATTCGAGCGTGCCTCAAAATCTGCCATTGAGGTGTCCAAGATGCTTGAGGTTGGGAAGATGCCTTACTACCCGAAGAGTTCAGGTTTCAAAGTGTCTGCGATGATGATTTGCGGGATACCAACAATGGAGGAAGAGTTCCTGCGGTTTGAAGAAGACAAGGCGATGGGGTGTGGCAATCTTTCCTCAACACTGCAGAAACTGTACATGTGGGAAAAAAAGCTTCTTGAGGAAGTCAAGGCTGAGGAGAAGATGCGGGCGTTGTATGACAGGCAACGTGAGGAGCTGAAAATATTAGATGAGAAAGGTGCAGAAGCTGATAAGCTTGAGGCTACTGAAAGATCCATCAGGAAGCTATCAACAAAGATAAGCATAGCAATTCAGGTTGTCAACACTATCTCAGACAAGATAAGTAAGCTGAGGGATGAAGAGTTATGGCCGCAAACATGTGAGCTCATCCAAGGGTTGATGCGGATGTGGAGCACTATGTTAGAATGCCATCAGATCCAATTGCATGCCATATCCCATGCTAAAAACATAGATTCCATGATAAACGGTGCAAAGTTTGGTGAAGCTCACATGGACTTGATCAAGCGCCTAGAGCTTCAGCATTTGGATT-GGATAGCCTCTTTTGCCTCATGGGTGAATGCTCAAAAAAGCTACGTTGGTACTTTAAATGACTGGTTGAGGAAAGGAGTCACATATGAACCTGAGGTAACTGATGATGGTGTGCCTCCTTTTTCTCCTGGACGGCTAGGAGCGCCACCTATTTTTGTCATATATAACAATTGGGCAGTTGGTGTGGGGAGGATATCTGAGAAGGAAGTAGTTGAGGCAATGCAGGCCTTTGCATCTAATGTTCTTGGCCTCTGGGAAAGGCACAGGTCAGAGCAAAGACAAGGTCTTATGGCTAATAAAGGTATGGACAAGGACCTTAGGGTGATGGAAAGGGATGAACAGTCGATGCGCAAGGCTCTGGAAGCACAAAATAAGAAGCTGGTGCTCATTTCTAATCAGAGCGGTGTATCCTTATCAGCACAAGCACAGGCCTTACAAGATGGAGGTTCCCATGGTGATACTGGTAGTTTGCAACTAAGTCTGAAGAATATTTTTGAAGCAATGGAGAACTTCACCGCCAACTCTGCAAACACCTACAAGGATCTCCACCTGCGTGCTGAAGAAGAGAAAGCTCGCGTTGCCCAAGAGAGTTGCAGAGTTTCCTAGTTCCTTTCGTGGTTTCCATGTTACATGAGGGCATGAGCCCTTTTTAACGCAAAGGAGCTGACTGCAGTGGTTCAGATGAGCACTATAGTTTGCATGGCAGCGTCACAATTCAAGTGGCAAGTGATGCACCTTGCATGAAATAGCTTCTACCCAGGGCTGCGGGCTGCCAGACAAACCTGTGGCGTAAATGGAGACTTGCTAGATTGTGTTTTTTTGAATTGGAGCAACACTCCTCATGCCATACAGCCCAGGAACTCAATTTTGCTAATAGCTGAATCACAAGACATTGCCGATAGGGGAAGAAAAATCTGAAGTGGCGAGTGACAAGATTCACTCAATGTTGGGAAATCCCAGTAAATAGTTGGAAGATGTAAGCTGCA-TAAACGAAATGCAT-GGTC-TAAGCATGGAGCAGTAAAATGTTCCGATCATGA-GTCCAAGATTCATGAAGTTGTATCCATCCATATGAAATAGTCAAATGTGATCATGCTGCCAGGTTCAGGGAAAGAGTCACTGGAAGAGTGCAACAATGCTAGCATGCCAGTGTACATAGTTGAAGGCAATGCGATATGGGATGAACCAAAGCTGATGCTGTGGGAGATGCTTCCCTCCCAGCTGGGAGGCTGCAGCCTAGCTAGTTCACCTGTTAGGGGAGTGATGGATGATGATGAGCTTGTAGGATAGAGAAAAAAAGTGGATGCCCTGACCCCGTTCTGCAGTTCACTAACTGTTGGATTTTTTTGTTCCGTTATTTATTATACATATAATTCATTTGTATCCCTGTACAGCCGGTGGCTAACTCATAAACCCCCCCTTTTTTGTGTCATGTTTATTCTATTTCTCCCCCATCGACTTTGCCTGTTTCTGCTTCTCTCTCT]
[+] EMBL AK100643 [AGTTAGCCACTCTATTACTACTACCTCCGTTGCCAACGCCGGAATCCATCCATCCATCCCCGCGCCGCGCTGTGCCGCCGCGAGAGCTTTGCGGCGGGCATGCGGGTGGGGATTCACCGCGGGGTGGAAGAAGCTGAAGCAGCAGCTGGTGGCGCAACGCCACGAGGCGCACCCCGCTGGCACCCACACCAACAAAAGGAGAAGATTCTCGCCACCACCACTCCCACTGATCCCCTCTTCTTCCTCCTCGTTCGCCTGCCATCTCCGGAGCCGGAGGAGGAGGAGGAGTAGCCGCCGCCCAGATCTGCGCCGCCATGCTGCCGCTGCTGCGGAGGCGGCGGCTGTGAATAGCTAGGTCGTTTTTATTGTTGTTTTTGGGTTGGTTTGGTTTGATTCCGATGGGGTGCGGGCAGTCGAAGATGGAGGAGGAGTACGCGGTGCGGCACTGCAGGGAGAGGTCGGAGCTGCTCGCCCTCGCCATCCGCCACCGCTACGCGCTCGCCGACACCCACCGTGCCTACGCCGAATCCCTCGCCGCCGTCGGCGCCGTGCTCCACGACTTCCTCCGCGGCGTCCAGTCGCTGCCCCCGCCGCCGCTCGAGCCCACGCTCCGCCTTCCCGCCCACCGCAAGGGCGACAACCTCCCCACCGCCTCCCCCGTCCCGGCCAACCCCGCCATCGCCTCCTCCTCCGCCGCCCAGCCGCTGCCGCCCGTCGCCAAGCAGGTACGAATCGCCGCCGCCCCCGATGACGGCGGCGGCGGCGGCCACATCCACTTCTCGGACGACGACTCCGATTCCGAGGGCGGCGGGCACATCAAGTTCCACTCCGACGACGAGGGCGACGCGCCCGCTCACCGCCGCCCAGAGATCGTCCGCTCCGCCGCGCCGCCGGTGGCTCCGCCGCCGCAGATGGGGCCACCACCACCGTATGGCTCCGGATATGCTCCTCCTCCGCCTTATGGTTCGGGATACGGGTATGGATACGGCCCCGCCCCCGATTACGGCGGCGGCATGGCCGTTGCCAACGGCGGCTATGACCCAGGGTATGGTGGTATGGGCGGAGCCAGTGGCGGCGGCGGCGGCGGCGGCTATGCGCCTGGATATGGAGGCATGGGAGTTGGGGATGGCGGCAGCGGTGGCGGCTATGAGCCAGCCTATGGCGGCATGGGCAGCTATGGCCAAAGCTTCTTCAACATCAGCTATGCGCGCAGCCAGCCGCCTCCGCCGTCCGTCTCATACGAGCACCGGCTGCAGGCCACCGATGCCAGGGTCCACTACTACGCCGGAGAAGGCAACCCTCAAGCACCCCCACTCGGGTATGGCGGTGGGTATGGTTATCCGCCGCAGGGCTCGAGCTCTTACAACCAGTATGCGTACGGTGGTTACTATGGTGGTGCTTCTCCTCCGCCTCCGGCCGATATACCTTCTACCTCCCGCGGGGAGGTTACGCCACCGGCACCTCCATCTCCGCCGAGGGTGTCTACTTGGGACTTCCTGAACCCATTTGAAACCTATGAGAGCTACTATGAGCAGCCAACTGCTGCTCAAGCGTCATACACTCCCAGCAGAAGTTCCAAGGATGTGCGTGAGGAGGAAGGCATACCAGATTTGGAGGATGAGGATATGGAGGTGGTTAAGGAAGCTTATGGTGATGAGAAGCACGCCGCCAATGGGTACAGTGGCAAGGGGAAGATGGCAAAAGAGGAAGGTGGTAGGAGCAGCACCGGGGATGAACTGCCCCATGAATCCAAGTTATCGGAAGCGAGCAGTAGCGGGAGCAACCAGGAGCATGATGTCCATGTAGTGGAGAAGAGTGTTGTGGGAGAACAGGTGCAGCGGTCAGAGCCTCGTCAGCATGTCGCAGGCCTGCCGCCCATAGGATCGGAGAAGACGTACTTTGATGATGCTGAGGTGGTGCTGGAGATCAGGACTCAATTCGAGCGTGCCTCAAAATCTGCCATTGAGGTGTCCAAGATGCTTGAGGTTGGGAAGATGCCTTACTACCCGAAGAGTTCAGGTTTCAAAGTGTCTGCGATGATGATTTGCGGGATACCAACAATGGAGGAAGAGTTCCTGCGGTTTGAAGAAGACAAGGCGATGGGGTGTGGCAATCTTTCCTCAACACTGCAGAAACTGTACATGTGGGAAAAAAAGCTTCTTGAGGAAGTCAAGGCTGAGGAGAAGATGCGGGCGTTGTATGACAGGCAACGTGAGGAGCTGAAAATATTAGATGAGAAAGGTGCAGAAGCTGATAAGCTTGAGGCTACTGAAAGATCCATCAGGAAGCTATCAACAAAGATAAGCATAGCAATTCAGGTTGTCAACACTATCTCAGACAAGATAAGTAAGCTGAGGGATGAAGAGTTATGGCCGCAAACATGTGAGCTCATCCAAGGGTTGATGCGGATGTGGAGCACTATGTTAGAATGCCATCAGATCCAATTGCATGCCATATCCCATGCTAAAAACATAGATTCCATGATAAACGGTGCAAAGTTTGGTGAAGCTCACATGGACTTGATCAAGCGCCTAGAGCTTCAGCATTTGGATT GGATAGCCTCTTTTGCCTCATGGGTGAATGCTCAAAAAAGCTACGTTGGTACTTTAAATGACTGGTTGAGGAAAGGAGTCACATATGAACCTGAGGTAACTGATGATGGTGTGCCTCCTTTTTCTCCTGGACGGCTAGGAGCGCCACCTATTTTTGTCATATATAACAATTGGGCAGTTGGTGTGGGGAGGATATCTGAGAAGGAAGTAGTTGAGGCAATGCAGGCCTTTGCATCTAATGTTCTTGGCCTCTGGGAAAGGCACAGGTCAGAGCAAAGACAAGGTCTTATGGCTAATAAAGGTATGGACAAGGACCTTAGGGTGATGGAAAGGGATGAACAGTCGATGCGCAAGGCTCTGGAAGCACAAAATAAGAAGCTGGTGCTCATTTCTAATCAGAGCGGTGTATCCTTATCAGCACAAGCACAGGCCTTACAAGATGGAGGTTCCCATGGTGATACTGGTAGTTTGCAACTAAGTCTGAAGAATATTTTTGAAGCAATGGAGAACTTCACCGCCAACTCTGCAAACACCTACAAGGATCTCCACCTGCGTGCTGAAGAAGAGAAAGCTCGCGTTGCCCAAGAGAGTTGCAGAGTTTCCTAGTTCCTTTCGTGGTTTCCATGTTACATGAGGGCATGAGCCCTTTTTAACGCAAAGGAGCTGACTGCAGTGGTTCAGATGAGCACTATAGTTTGCATGGCAGCGTCACAATTCAAGTGGCAAGTGATGCACCTTGCATGAAATAGCTTCTACCCAGGGCTGCGGGCTGCCAGACAAACCTGTGGCGTAAATGGAGACTTGCTAGATTGTGTTTTTTTGAATTGGAGCAACACTCCTCATGCCATACAGCCCAGGAACTCAATTTTGCTAATAGCTGAATCACAAGACATTGCCGATAGGGGAAGAAAAATCTGAAGTGGCGAGTGACAAGATTCACTCAATGTTGGGAAATCCCAGTAAATAGTTGGAAGATGTAAGCTGCA TAAACGAAATGCAT GGTC TAAGCATGGAGCAGTAAAATGTTCCGATCATGA GTCCAAGATTCATGAAGTTGTATCCATCCATATGAAATAGTCAAATGTGATCATGCTGCCAGGTTCAGGGAAAGAGTCACTGGAAGAGTGCAACAATGCTAGCATGCCAGTGTACATAGTTGAAGGCAATGCGATATGGGATGAACCAAAGCTGATGCTGTGGGAGATGCTTCCCTCCCAGCTGGGAGGCTGCAGCCTAGCTAGTTCACCTGTTAGGGGAGTGATGGATGATGATGAGCTTGTAGGATAGAGAAAAAAAGTGGATGCCCTGACCCCGTTCTGCAGTTCACTAACTGTTGGATTTTTTTGTTCCGTTATTTATTATACATATAATTCATTTGTATCCCTGTACAGCCGGTGGCTAACTCATAAACCCCCCCTTTTTTGTGTCATGTTTATTCTATTTCTCCCCCATCGACTTTGCCTGTTTCTGCTTCTCTCTCT]
[+] EMBL AK102669 [ GCATGGGAGTTGGGGATGGCGGCAGCGGTGGCGGCTATGAGCCAGCCTATGGCGGCATGGGCAGCTATGGCCAAAGCTTCTTCAACATCAGCTATGCGCGCAGCCAGCCGCCTCCGCCGTCCGTCTCATACGAGCACCGGCTGCAGGCCACCGATGCCAGGGTCCACTACTACGCCGGAGAAGGCAACCCTCAAGCACCCCCACTCGGGTATGGCGGTGGGTATGGTTATCCGCCGCAGGGCTCGAGCTCTTACAACCAGTATGCGTACGGTGGTTACTATGGTGGTGCTTCTCCTCCGCCTCCGGCCGATATACCTTCTACCTCCCGCGGGGAGGTTACGCCACCGGCACCTCCATCTCCGCCGAGGGTGTCTACTTGGGACTTCCTGAACCCATTTGAAACCTATGAGAGCTACTATGAGCAGCCAACTGCTGCTCAAGCGTCATACACTCCCAGCAGAAGTTCCAAGGATGTGCGTGAGGAGGAAGGCATACCAGATTTGGAGGATGAGGATATGGAGGTGGTTAAGGAAGCTTATGGTGATGAGAAGCACGCCGCCAATGGGTACAGTGGCAAGGGGAAGATGGCAAAAGAGGAAGGTGGTAGGAGCAGCACCGGGGATGAACTGCCCCATGAATCCAAGTTATCGGAAGCGAGCAGTAGCGGGAGCAACCAGGAGCATGATGTCCATGTAGTGGAGAAGAGTGTTGTGGGAGAACAGGTGCAGCGGTCAGAGCCTCGTCAGCATGTCGCAGGCCTGCCGCCCATAGGATCGGAGAAGACGTACTTTGATGATGCTGAGGTGGTGCTGGAGATCAGGACTCAATTCGAGCGTGCCTCAAAATCTGCCATTGAGGTGTCCAAGATGCTTGAGGTTGGGAAGATGCCTTACTACCCGAAGAGTTCAGGTTTCAAAGTGTCTGCGATGATGATTTGCGGGATACCAACAATGGAGGAAGAGTTCCTGCGGTTTGAAGAAGACAAGGCGATGGGGTGTGGCAATCTTTCCTCAACACTGCAGAAACTGTACATGTGGGAAAAAAAGCTTCTTGAGGAAGTCAAGGCTGAGGAGAAGATGCGGGCGTTGTATGACAGGCAACGTGAGGAGCTGAAAATATTAGATGAGAAAGGTGCAGAAGCTGATAAGCTTGAGGCTACTGAAAGATCCATCAGGAAGCTATCAACAAAGATAAGCATAGCAATTCAGGTTGTCAACACTATCTCAGACAAGATAAGTAAGCTGAGGGATGAAGAGTTATGGCCGCAAACATGTGAGCTCATCCAAGGGTTGATGCGGATGTGGAGCACTATGTTAGAATGCCATCAGATCCAATTGCATGCCATATCCCATGCTAAAAACATAGATTCCATGATAAACGGTGCAAAGTTTGGTGAAGCTCACATGGACTTGATCAAGCGCCTAGAGCTTCAGCATTTGGATT GGATAGCCTCTTTTGCCTCATGGGTGAATGCTCAAAAAAGCTACGTTGGTACTTTAAATGACTGGTTGAGGAAAGGAGTCACATATGAACCTGAGGTAACTGATGATGGTGTGCCTCCTTTTTCTCCTGGACGGCTAGGAGCGCCACCTATTTTTGTCATATATAACAATTGGGCAGTTGGTGTGGGGAGGATATCTGAGAAGGAAGTAGTTGAGGCAATGCAGGCCTTTGCATCTAATGTTCTTGGCCTCTGGGAAAGGCACAGGTCAGAGCAAAGACAAGGTCTTATGGCTAATAAAGGTATGGACAAGGACCTTAGGGTGATGGAAAGGGATGAACAGTCGATGCGCAAGGCTCTGGAAGCACAAAATAAGAAGCTGGTGCTCATTTCTAATCAGAGCGGTGTATCCTTATCAGCACAAGCACAGGCCTTACAAGATGGAGGTTCCCATGGTGATACTGGTAGTTTGCAACTAAGTCTGAAGAATATTTTTGAAGCAATGGAGAACTTCACCGCCAACTCTGCAAACACCTACAAGGATCTCCACCTGCGTGCTGAAGAAGAGAAAGCTCGCGTTGCCCAAGAGAGTTGCAGAGTTTCCTAGTTCCTTTCGTGGTTTCCATGTTACATGAGGGCATGAGCCCTTTTTAACGCAAAGGAGCTGACTGCAGTGGTTCAGATGAGCACTATAGTTTGCATGGCAGCGTCACAATTCAAGTGGCAAGTGATGCACCTTGCATGAAATAGCTTCTACCCAGGGCTGCGGGCTGCCAGACAAACCTGTGGCGTAAATGGAGACTTGCTAGATTGTGTTTTTTTGAATTGGAGCAACACTCCTCATGCCATACAGCCCAGGAACTCAATTTTGCTAATAGCTGAATCACAAGACATTGCCGATAGGGGAAGAAAAATCTGAAGTGGCGAGTGACAAGATTCACTCAATGTTGGGAAATCCCAGTAAATAGTTGGAAGATGTAAGCTGCA TAAACGAAATGCAT GGTC TAAGCATGGAGCAGTAAAATGTTCCGATCATGA GTCCAAGATTCATGAAGTTGTATCCATCCATATGAAATAGTCAAATGTGATCATGCTGCCAGGTTCAGGGAAAGAGTCACTGGAAGAGTGCAACAATGCTAGCATGCCAGTGTACATAGTTGAAGGCAATGCGATATGGGATGAACCAAAGCTGATGCTGTGGGAGATGCTTCCCTCCCAGCTGGGAGGCTGCAGCCTAGCTAGTTCACCTGTTAGGGGAGTGATGGATGATGATGAGCTTGTAGGATAGAGAAAAAAAGTGGATGCCCTGACCCCGTTCTGCAGTTCACTAACTGTTGGATTTTTTTGTTCCGTTATTTATTATACATATAATTCATTTGTATCCCTGTACAGCCGGTGGCTAACTCATAAACCCCCCCT ]
[+] EMBL AU064262 [ GATGCGGGCGTTGTATGACAGGCAACGTGAGGAGCTGAAAATATTAGATGAGAAAGGTGCAGAAGCTGATAAGCTTGAGGCTACTGAAAGATCCATCAGGAAGCTATCAACAAAGATAAGCATAGCAATTCAGGTTGTCAACACTATCTCAGACAAGATAAGTAAGCTGAGGGATGAAGAGTTATGGCCGCAAACATGTGAGCTCATCCAAGGGTTGATGCGGATGTGGAGCACTATGTTAGAATGCCATCAGATCCAATTGCATGCCATATCCCATGCTAAAAACATAGATTCCATGATAAACGGTGCAAAGTTTGGTGAAGCTCACATGGACTTGATCAAGCGCCTAGAGCTTCAGCATTTGGATTGGGATAGCCTCTTTTGCCTCATGGGTGAATGCTCAAAAAAGCTACGTTGGTACTTTAAATGACTGGTTGAGGAAAGGAGTCACAT ]
[+] EMBL CF327806 [ AAGGGATGAACAGTCGATGCGCAAGGCTCTGGAAGCACAAAATAAGAAGCTGGTGCTCATTTCTAATCAGAGCGGTGTATCCTTATCAGCACAAGCACAGGCCTTACAAGATGGAGGTTCCCATGGTGATACTGGTAGTTTGCAACTAAGTCTGAAGAATATTTTTGAAGCAATGGAGAACTTCACCGCCAACTCTGCAAACACCTACAAGGATCTCCACCTGCGTGCTGAAGAAGAGAAAGCTCGCGTTGCCCAAGAGAGTTGTAGAGTTTCCTAGTTCCTTTCGTGGTTTCCATGTTACATGAGGGCATGAGCCCTTTTTAACGCAAAGGAGCTGACTGCAGTGGTTCAGATGAGCACTATAGTTTGCATGGCAGCGTCACAATTCAAGTGGCAAGTGATGCACCTTGCATGAAATAGCTTCTACCCAGGGCTGCGGGCTGCCAGACAAACCTGTGGCGTAAATGGAGACTTGCTAGATTGTGTTTTTTTGAATTGGAGCAACACTCCTCATGCCATACAGCCCAGGAACTCAATTTTGCTAATAGCTGAATCACAAGACATTGCCGATAGGGGAAGAA ]
[+] EMBL D43342 [ TTGCATGGCAGCGTCACAATTCAAGTGGCAAGTNATGCACCTTGCATGAAATAGCTTCTACCCAGGGCTGCGGGCTGCCAGACAAACCTGTGGCGTAAATGGAGACTTGCTAGATTGTGTTTTTTTGAATTGGAGCAACACTCCTCATGCCATACAGCCCAGGAACTCAATTTTGCTAATAGCTGAATCACAAGACATTGCCGATAGGGGAAGAAAAATCTGAAGTGGCGAGTGACAAGATTCACTCAATGTTGGGAANTNCCAGTAAATAGTTGGAAGNTGTAAGCTGCATTAAACGNAATGCATGGGTCTTAAGCATGTGGCNGTAAAATGTTCCCNTCATGAGGTCC ]
[+] EMBL BI802140 [ AGCCTAGCTAGTTCACCTGTTAGGGGAGTGATGGATGATGATGAGCTTGTAGGATAGAGAAAAAAAGTGGATGCCCTGACCCCGTTCTGCAGTTCACTAACTGTTGGATTTTTTTGTTCCGTTATTTATTATACATATAATTCATTTGTAaaaa ]
consensusID : consensus_10541#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 323 fasta sequence
[TTAGCATGCCAGTGTACATAGTTGAAGGCAATGCGATATGGGATGAACCAAAGCTGATGCTGTGGGAAATGTTTCCCTCCCAGTTGGGAGGTTGCAGCCTAGTTAGTTCCCCTGTTAGGGGAGTGATGGATAATAATGAGCTTGTAGGATAAAAAAAAAAAGTGGATGCCCTGACCCCGTTTTGCAGTTCACTAACTGTTGGATTTTTTTGTTCCGTTATTTATTAAACAAATAATTCATTTGTATCCCTGTACAGCCGGTGGTTAATTCATAAACCCCCCCTTTTTTGTGTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]
[-] EMBL CF327807 [TTAGCATGCCAGTGTACATAGTTGAAGGCAATGCGATATGGGATGAACCAAAGCTGATGCTGTGGGAAATGTTTCCCTCCCAGTTGGGAGGTTGCAGCCTAGTTAGTTCCCCTGTTAGGGGAGTGATGGATAATAATGAGCTTGTAGGATAAAAAAAAAAAGTGGATGCCCTGACCCCGTTTTGCAGTTCACTAACTGTTGGATTTTTTTGTTCCGTTATTTATTAAACAAATAATTCATTTGTATCCCTGTACAGCCGGTGGTTAATTCATAAACCCCCCCTTTTTTGTGTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_10541#0 AGTTAGCCACTCTATTACTACTACCTCCGTTGCCAACGCCGGAATCCATCCATCCATCCC 60
consensus_10541#1 ------------------------------------------------------------
consensus_10541#0 CGCGCCGCGCTGTGCCGCCGCGAGAGCTTTGCGGCGGGCATGCGGGTGGGGATTCACCGC 120
consensus_10541#1 ------------------------------------------------------------
consensus_10541#0 GGGGTGGAAGAAGCTGAAGCAGCAGCTGGTGGCGCAACGCCACGAGGCGCACCCCGCTGG 180
consensus_10541#1 ------------------------------------------------------------
consensus_10541#0 CACCCACACCAACAAAAGGAGAAGATTCTCGCCACCACCACTCCCACTGATCCCCTCTTC 240
consensus_10541#1 ------------------------------------------------------------
consensus_10541#0 TTCCTCCTCGTTCGCCTGCCATCTCCGGAGCCGGAGGAGGAGGAGGAGTAGCCGCCGCCC 300
consensus_10541#1 ------------------------------------------------------------
consensus_10541#0 AGATCTGCGCCGCCATGCTGCCGCTGCTGCGGAGGCGGCGGCTGTGAATAGCTAGGTCGT 360
consensus_10541#1 ------------------------------------------------------------
consensus_10541#0 TTTTATTGTTGTTTTTGGGTTGGTTTGGTTTGATTCCGATGGGGTGCGGGCAGTCGAAGA 420
consensus_10541#1 ------------------------------------------------------------
consensus_10541#0 TGGAGGAGGAGTACGCGGTGCGGCACTGCAGGGAGAGGTCGGAGCTGCTCGCCCTCGCCA 480
consensus_10541#1 ------------------------------------------------------------
consensus_10541#0 TCCGCCACCGCTACGCGCTCGCCGACACCCACCGTGCCTACGCCGAATCCCTCGCCGCCG 540
consensus_10541#1 ------------------------------------------------------------
consensus_10541#0 TCGGCGCCGTGCTCCACGACTTCCTCCGCGGCGTCCAGTCGCTGCCCCCGCCGCCGCTCG 600
consensus_10541#1 ------------------------------------------------------------
consensus_10541#0 AGCCCACGCTCCGCCTTCCCGCCCACCGCAAGGGCGACAACCTCCCCACCGCCTCCCCCG 660
consensus_10541#1 ------------------------------------------------------------
consensus_10541#0 TCCCGGCCAACCCCGCCATCGCCTCCTCCTCCGCCGCCCAGCCGCTGCCGCCCGTCGCCA 720
consensus_10541#1 ------------------------------------------------------------
consensus_10541#0 AGCAGGTACGAATCGCCGCCGCCCCCGATGACGGCGGCGGCGGCGGCCACATCCACTTCT 780
consensus_10541#1 ------------------------------------------------------------
consensus_10541#0 CGGACGACGACTCCGATTCCGAGGGCGGCGGGCACATCAAGTTCCACTCCGACGACGAGG 840
consensus_10541#1 ------------------------------------------------------------
consensus_10541#0 GCGACGCGCCCGCTCACCGCCGCCCAGAGATCGTCCGCTCCGCCGCGCCGCCGGTGGCTC 900
consensus_10541#1 ------------------------------------------------------------
consensus_10541#0 CGCCGCCGCAGATGGGGCCACCACCACCGTATGGCTCCGGATATGCTCCTCCTCCGCCTT 960
consensus_10541#1 ------------------------------------------------------------
consensus_10541#0 ATGGTTCGGGATACGGGTATGGATACGGCCCCGCCCCCGATTACGGCGGCGGCATGGCCG 1020
consensus_10541#1 ------------------------------------------------------------
consensus_10541#0 TTGCCAACGGCGGCTATGACCCAGGGTATGGTGGTATGGGCGGAGCCAGTGGCGGCGGCG 1080
consensus_10541#1 ------------------------------------------------------------
consensus_10541#0 GCGGCGGCGGCTATGCGCCTGGATATGGAGGCATGGGAGTTGGGGATGGCGGCAGCGGTG 1140
consensus_10541#1 ------------------------------------------------------------
consensus_10541#0 GCGGCTATGAGCCAGCCTATGGCGGCATGGGCAGCTATGGCCAAAGCTTCTTCAACATCA 1200
consensus_10541#1 ------------------------------------------------------------
consensus_10541#0 GCTATGCGCGCAGCCAGCCGCCTCCGCCGTCCGTCTCATACGAGCACCGGCTGCAGGCCA 1260
consensus_10541#1 ------------------------------------------------------------
consensus_10541#0 CCGATGCCAGGGTCCACTACTACGCCGGAGAAGGCAACCCTCAAGCACCCCCACTCGGGT 1320
consensus_10541#1 ------------------------------------------------------------
consensus_10541#0 ATGGCGGTGGGTATGGTTATCCGCCGCAGGGCTCGAGCTCTTACAACCAGTATGCGTACG 1380
consensus_10541#1 ------------------------------------------------------------
consensus_10541#0 GTGGTTACTATGGTGGTGCTTCTCCTCCGCCTCCGGCCGATATACCTTCTACCTCCCGCG 1440
consensus_10541#1 ------------------------------------------------------------
consensus_10541#0 GGGAGGTTACGCCACCGGCACCTCCATCTCCGCCGAGGGTGTCTACTTGGGACTTCCTGA 1500
consensus_10541#1 ------------------------------------------------------------
consensus_10541#0 ACCCATTTGAAACCTATGAGAGCTACTATGAGCAGCCAACTGCTGCTCAAGCGTCATACA 1560
consensus_10541#1 ------------------------------------------------------------
consensus_10541#0 CTCCCAGCAGAAGTTCCAAGGATGTGCGTGAGGAGGAAGGCATACCAGATTTGGAGGATG 1620
consensus_10541#1 ------------------------------------------------------------
consensus_10541#0 AGGATATGGAGGTGGTTAAGGAAGCTTATGGTGATGAGAAGCACGCCGCCAATGGGTACA 1680
consensus_10541#1 ------------------------------------------------------------
consensus_10541#0 GTGGCAAGGGGAAGATGGCAAAAGAGGAAGGTGGTAGGAGCAGCACCGGGGATGAACTGC 1740
consensus_10541#1 ------------------------------------------------------------
consensus_10541#0 CCCATGAATCCAAGTTATCGGAAGCGAGCAGTAGCGGGAGCAACCAGGAGCATGATGTCC 1800
consensus_10541#1 ------------------------------------------------------------
consensus_10541#0 ATGTAGTGGAGAAGAGTGTTGTGGGAGAACAGGTGCAGCGGTCAGAGCCTCGTCAGCATG 1860
consensus_10541#1 ------------------------------------------------------------
consensus_10541#0 TCGCAGGCCTGCCGCCCATAGGATCGGAGAAGACGTACTTTGATGATGCTGAGGTGGTGC 1920
consensus_10541#1 ------------------------------------------------------------
consensus_10541#0 TGGAGATCAGGACTCAATTCGAGCGTGCCTCAAAATCTGCCATTGAGGTGTCCAAGATGC 1980
consensus_10541#1 ------------------------------------------------------------
consensus_10541#0 TTGAGGTTGGGAAGATGCCTTACTACCCGAAGAGTTCAGGTTTCAAAGTGTCTGCGATGA 2040
consensus_10541#1 ------------------------------------------------------------
consensus_10541#0 TGATTTGCGGGATACCAACAATGGAGGAAGAGTTCCTGCGGTTTGAAGAAGACAAGGCGA 2100
consensus_10541#1 ------------------------------------------------------------
consensus_10541#0 TGGGGTGTGGCAATCTTTCCTCAACACTGCAGAAACTGTACATGTGGGAAAAAAAGCTTC 2160
consensus_10541#1 ------------------------------------------------------------
consensus_10541#0 TTGAGGAAGTCAAGGCTGAGGAGAAGATGCGGGCGTTGTATGACAGGCAACGTGAGGAGC 2220
consensus_10541#1 ------------------------------------------------------------
consensus_10541#0 TGAAAATATTAGATGAGAAAGGTGCAGAAGCTGATAAGCTTGAGGCTACTGAAAGATCCA 2280
consensus_10541#1 ------------------------------------------------------------
consensus_10541#0 TCAGGAAGCTATCAACAAAGATAAGCATAGCAATTCAGGTTGTCAACACTATCTCAGACA 2340
consensus_10541#1 ------------------------------------------------------------
consensus_10541#0 AGATAAGTAAGCTGAGGGATGAAGAGTTATGGCCGCAAACATGTGAGCTCATCCAAGGGT 2400
consensus_10541#1 ------------------------------------------------------------
consensus_10541#0 TGATGCGGATGTGGAGCACTATGTTAGAATGCCATCAGATCCAATTGCATGCCATATCCC 2460
consensus_10541#1 ------------------------------------------------------------
consensus_10541#0 ATGCTAAAAACATAGATTCCATGATAAACGGTGCAAAGTTTGGTGAAGCTCACATGGACT 2520
consensus_10541#1 ------------------------------------------------------------
consensus_10541#0 TGATCAAGCGCCTAGAGCTTCAGCATTTGGATTGGATAGCCTCTTTTGCCTCATGGGTGA 2580
consensus_10541#1 ------------------------------------------------------------
consensus_10541#0 ATGCTCAAAAAAGCTACGTTGGTACTTTAAATGACTGGTTGAGGAAAGGAGTCACATATG 2640
consensus_10541#1 ------------------------------------------------------------
consensus_10541#0 AACCTGAGGTAACTGATGATGGTGTGCCTCCTTTTTCTCCTGGACGGCTAGGAGCGCCAC 2700
consensus_10541#1 ------------------------------------------------------------
consensus_10541#0 CTATTTTTGTCATATATAACAATTGGGCAGTTGGTGTGGGGAGGATATCTGAGAAGGAAG 2760
consensus_10541#1 ------------------------------------------------------------
consensus_10541#0 TAGTTGAGGCAATGCAGGCCTTTGCATCTAATGTTCTTGGCCTCTGGGAAAGGCACAGGT 2820
consensus_10541#1 ------------------------------------------------------------
consensus_10541#0 CAGAGCAAAGACAAGGTCTTATGGCTAATAAAGGTATGGACAAGGACCTTAGGGTGATGG 2880
consensus_10541#1 ------------------------------------------------------------
consensus_10541#0 AAAGGGATGAACAGTCGATGCGCAAGGCTCTGGAAGCACAAAATAAGAAGCTGGTGCTCA 2940
consensus_10541#1 ------------------------------------------------------------
consensus_10541#0 TTTCTAATCAGAGCGGTGTATCCTTATCAGCACAAGCACAGGCCTTACAAGATGGAGGTT 3000
consensus_10541#1 ------------------------------------------------------------
consensus_10541#0 CCCATGGTGATACTGGTAGTTTGCAACTAAGTCTGAAGAATATTTTTGAAGCAATGGAGA 3060
consensus_10541#1 ------------------------------------------------------------
consensus_10541#0 ACTTCACCGCCAACTCTGCAAACACCTACAAGGATCTCCACCTGCGTGCTGAAGAAGAGA 3120
consensus_10541#1 ------------------------------------------------------------
consensus_10541#0 AAGCTCGCGTTGCCCAAGAGAGTTGCAGAGTTTCCTAGTTCCTTTCGTGGTTTCCATGTT 3180
consensus_10541#1 ------------------------------------------------------------
consensus_10541#0 ACATGAGGGCATGAGCCCTTTTTAACGCAAAGGAGCTGACTGCAGTGGTTCAGATGAGCA 3240
consensus_10541#1 ------------------------------------------------------------
consensus_10541#0 CTATAGTTTGCATGGCAGCGTCACAATTCAAGTGGCAAGTGATGCACCTTGCATGAAATA 3300
consensus_10541#1 ------------------------------------------------------------
consensus_10541#0 GCTTCTACCCAGGGCTGCGGGCTGCCAGACAAACCTGTGGCGTAAATGGAGACTTGCTAG 3360
consensus_10541#1 ------------------------------------------------------------
consensus_10541#0 ATTGTGTTTTTTTGAATTGGAGCAACACTCCTCATGCCATACAGCCCAGGAACTCAATTT 3420
consensus_10541#1 ------------------------------------------------------------
consensus_10541#0 TGCTAATAGCTGAATCACAAGACATTGCCGATAGGGGAAGAAAAATCTGAAGTGGCGAGT 3480
consensus_10541#1 ------------------------------------------------------------
consensus_10541#0 GACAAGATTCACTCAATGTTGGGAAATCCCAGTAAATAGTTGGAAGATGTAAGCTGCATA 3540
consensus_10541#1 ------------------------------------------------------------
consensus_10541#0 AACGAAATGCATGGTCTAAGCATGGAGCAGTAAAATGTTCCGATCATGAGTCCAAGATTC 3600
consensus_10541#1 ------------------------------------------------------------
consensus_10541#0 ATGAAGTTGTATCCATCCATATGAAATAGTCAAATGTGATCATGCTGCCAGGTTCAGGGA 3660
consensus_10541#1 ------------------------------------------------------------
consensus_10541#0 AAGAGTCACTGGAAGAGTGCAACAATGCTAGCATGCCAGTGTACATAGTTGAAGGCAATG 3720
consensus_10541#1 ---------------------------TTAGCATGCCAGTGTACATAGTTGAAGGCAATG 33
********************************
consensus_10541#0 CGATATGGGATGAACCAAAGCTGATGCTGTGGGAGATGCTTCCCTCCCAGCTGGGAGGCT 3780
consensus_10541#1 CGATATGGGATGAACCAAAGCTGATGCTGTGGGAAATGTTTCCCTCCCAGTTGGGAGGTT 93
********************************** *** *********** ******* *
consensus_10541#0 GCAGCCTAGCTAGTTCACCTGTTAGGGGAGTGATGGATGATGATGAGCTTGTAGGATAGA 3840
consensus_10541#1 GCAGCCTAGTTAGTTCCCCTGTTAGGGGAGTGATGGATAATAATGAGCTTGTAGGATAAA 153
********* ****** ********************* ** **************** *
consensus_10541#0 GAAAAAAAGTGGATGCCCTGACCCCGTTCTGCAGTTCACTAACTGTTGGATTTTTTTGTT 3900
consensus_10541#1 AAAAAAAAGTGGATGCCCTGACCCCGTTTTGCAGTTCACTAACTGTTGGATTTTTTTGTT 213
*************************** *******************************
consensus_10541#0 CCGTTATTTATTATACATATAATTCATTTGTATCCCTGTACAGCCGGTGGCTAACTCATA 3960
consensus_10541#1 CCGTTATTTATTAAACAAATAATTCATTTGTATCCCTGTACAGCCGGTGGTTAATTCATA 273
************* *** ******************************** *** *****
consensus_10541#0 AACCCCCCCTTTTTTGTGTCATGTTTATTCTATTTCTCCCCCATCGACTTTGCCTGTTTC 4020
consensus_10541#1 AACCCCCCCTTTTTTGTGTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA---------- 323
********************* * * * *
consensus_10541#0 TGCTTCTCTCTCT 4033
consensus_10541#1 -------------
|
| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||