These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_10544#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 1360 fasta sequence [TTTTTTTTTTTTTTTTTAAACACATAAGTAAATTCTTTATTTCTTCACATATACATTATACAGGGTTGTTGCATACATCA---AATGCATCTCATACATTATTCGTCTAAAATAGAAATAGGGAAAATTAAATAAAAATGTTGGGGTGATCTGGGACCACCCCTAATTGCTTTAGGAGATTTCAAATATAAGATTTAGGCAAAAGAAAAAATTTAAAGTTGCTTGATGTCACATATTTTGCAACCAAACCATTTTGGGGCACAAAATTTGTAACATTAGCCATCTCTTAGTACTTTCCAAAACTATTTATTTCTTAGGTAAACTCTGAGTTTTTGGGCAATTGAAAATCAGTCCCTAAATTCAAAGTAATCTCCATATTTTTAAAGTCTATGGTACTATAATGCAAAAGTTACAAATATCATACTTTTCACTAAATTTTTATTTAATTGCAAATCTGTGAAAAATTATGCTGAGCCTCCACCGAATAAACCATGCTTAGGTGTCAAACAGGGAGACCACTAGTAAAACCTTAGTAGGTGAGTCACCTAGTAGTCAACCATGTCCCTGTCACAAAAACCATATCAGTGTGAACTCCATCCTGACCGAGCCTCATTTTCCTCGTAGAGACCAAAACCAGTTAGCAAGAAGAACCACCATAACCAGAGAGTTAGAGAAGAAAAGAAAAATACAAGAGGGCAAAATCACCCAACATCAGGTGGAGCAGGGGCTCCAGCTCCATTTGGAGCAGGTACCCCAGCTCAAGGAGGAGACGCTGATTCAGTAGAATCAACCAACCAATAGAAGCTGCAGTAGAAGCAAAAGAGGAGTTCAACTATATATTTTCACAACCACTGAATAATCAACAAAGAGGTAAACTAGATTAAGAGCATCATCCATGGCATATAATCATGATTAGAAGTCAGATTATTTACAAATCAAGAATCTAGAGACCATATTATTTGCATTACAAGGTTACAGTGGCACACATCTAACAAATACTTCTATTGTGAGACATTATGAGAAATAGAACAGAGAAATAGAAGGGGGAAAAGGGATATGGAGTTACTGGTGAGGGTTGTGGCCGGCAGAGTTGCCATTTGAGGCATTGGCCGTCTCCACAGCGACCATCACAGGAGTTGGGTACCAATAGCCATGGAGGACAGCAATGCTCAAATTACTTGAGAGAGGAGTGGTGGTAGTAGAGGATGGAGGTGAAGCAGGACATGAGTTTGTGGGAACTAGGGGGATCAAATCACTGCAGGGGTAGCTGCTAGGGAGATCACCGGAGTGGGGCATGGCAGCCGGCCTGAGGGAGAGCGTCGGTGTTGGCGGCGCTGTTTGGGGATGGCGGCACAGGAGAAAA] [+] EMBL CF327864 [TTTTTTTTTTTTTTTTTAAACACATAAGTAAATTCTTTATTTCTTCACATATACATTATACAGGGTTGTTGCATACATCA AATGCATCTCATACATTATTCGTCTAAAATAGAAATAGGGAAAATTAAATAAAAATGTTGGGGTGATCTGGGACCACCCCTAATTGCTTTAGGAGATTTCAAATATAAGATTTAGGCAAAAGAAAAAATTTAAAGTTGCTTGATGTCACATATTTTGCAACCAAACCATTTTGGGGCACAAAATTTGTAACATTAGCCATCTCTTAGTACTTTCCAAAACTATTTATTTCTTAGGTAAACTCTGAGTTTTTGGGCAATTGAAAATCAGTCCCTAAATTCAAAGTAATCTCCATATTTTTAAAGTCTATGGTACTATAATGCAAAAGTTACAAATATCATACTTTTCACTAAATTTTTATTTAATTGCAAATCTGTGAAAAATTATGCTGAGCCTCCACCGAATAAACCATGCTTAGGTGTCAAACAGGGAGACCACTAGTAAAACCTTAGTAGGTGAGTCACCTAGTAGTCAACCATGTCCATGTGACAAAAACCATATCAGTGTGAACCCCATCCTGACCGAGCCTCg ] [+] EMBL CB657745 [ AGTAAATTCTTTATTTCTTCACATATACATTATACAGTGTTGTTGCATACATCAAATAATGCATCTCATACATTATTCATCTAAAATAGAAATAGTGAAAATTAAATAAAAATATTGGTGTGATCTGTGACCACACCTAATTGCTTTAGGAGATTTCAAATATAAGATTTAGGCAAAAGAGAAAATTTAGAGTTGCTTGATGTCACATATTTTGCAACCAAACCATTTCGGGGCACAAAATTAGTAACATTAGCCATCTCTTAGTAGCTTCCAAAACTATTTATTTCTTAGGTAAACTCTGAGTTTTTGGGCAATTGAAAATCAGTCCCTAAACTCAAAGTAATCTCCATATTTTTAAAGTCTATGGTACTATAATGCAAAAGTTACAAATATTATATTTTTCACTAGGTTTTTATTTAATTGCAAATCTGTGAAAAATTATGCTGAGCCTCCACCGAATAAACCATGCTTAGGTGTCAAACAGGGAGACCACCAGTAAAACCTTAGTAGGTGAGTCACCTAGTAGTCAACCATGTCCCTGTCACAAAAACCATATCAGTGTGAACTCCATCCTGACCGAGCCTCATTTTCCTCGTAGAGACCAAAACCAGTTAGCAAGAAGAACCACCATAACCAGAGAGTTAGAGAAGAAAAGAAAAATACAAGAGGGCAAAATCACCCAACATCAGGTGGAGCAGGGGCTCCAGCTCCATTTGGAGCAGGTACCCCAGCTCAAGGAGGAGACGCTGATTCAGTAGAATCAACCAACCAATAGAAGCTGCAGTAGAAGCAAAAGAGGAGTTCA ] [-] EMBL CB657744 [ CATGTCCCTGTCACAAAAACCATATCAGTGTGAACTCCATCCTGACCGAGCCTCATTTTCCTCGTAGAGACCAAAACCAGTTAGCAAGAAGAACCACCATAACCAGAGAGTTAGAGAAGAAAAGAAAAATACAAGAGGGCAAAATCACCCAACATCAGGTGGAGCAGGGGCTCCAGCTCCATTTGGAGCAGGTACCCCAGCTCAAGGAGGAGACGCTGATTCAGTAGAATCAACCAACCAATAGAAGCTGCAGTAGAAGCAAAAGAGGAGTTCAACTATATATTTTCACAACCACTGAATAATCAACAAAGAGGTAAACTAGATTAAGAGCATCATCCATGGCATATAATCATGATTAGAAGTCAGATTATTTACAAATCAAGAATCTAGAGACCATATTATTTGCATTACAAGGTTACAGTGGCACACATCTAACAAATACTTCTATTGTGAGACATTATGAGAAATAGAACAGAGAAATAGAAGGGGGAAAAGGGATATGGAGTTACTGGTGAGGGTTGTGGCCGGCAGAGTTGCCATTTGAGGCATTGGCCGTCTCCACAGCGACCATCACAGGAGTTGGGTACCAATAGCCATGGAGGACAGCAATGCTCAAATTACTTGAGAGAGGAGTGGTGGTAGTAGAGGATGGAGGTGAAGCAGGACATGAGTTTGTGGGAACTAGGGGGATCAAATCACTGCAGGGGTAGCTGCTAGGGAGATCACCGGAGTGGGGCATGGCAGCCGGCCTGAGGGAGAGCGTCGGTGTTGGCG ] [-] EMBL CF340578 [ GAGTTTGTGGGGACTAGGGGGATCGAATCAGTGCAGGGGTAGCTGATAGGGAGATCACCGGAGTGGGGCATGGCAGCCGGCCTGAGGGAGAGCGTCGGTGTTGGCGGCGCTGTTTGGGGATGGCGGCACAGGAGAAAA] consensusID : consensus_10544#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 759 fasta sequence [TTTTTTTTTTTTATCATACTTTTCACTAGATTTTTATTTAATTGCAAATCTGTGAAAAATTATGCTGAGCCTCCACCGAATAAACCATGCTTAGGTGTCAAACAGGGAGACCACCAGTAAAACCTTAGTAGGTGAGTCACCTAGTAGTCAACCATGTCCCTGTGACAAAAACCATATCAGTGTGAACTCCATCCTGACCGAGCCTCGTTTTCCTCGTAGAGACCAAAACCAGTTAGCAAGAAGAACCACCCATAACCAGAGAGTTAGAGAAGAAAAGAAAAATACAAGAGGGCAAAATCACCCAACATCA-GGTGGAGCAGGGG-CTCCAGCTCCATTAGGAGCAGGTACCCCAGCTCAAGGAGGAGACGCTGATTCAGTAGAATCAACCAACCAATAGAAGTGGTGAGGGTTGTGGCCGGCAGAGTTGCCATTTGAGGCATTGGCCGTCTCCACAGCGACCATCACAGGAGTTGGGTACCAATAGCCATGGAGGACAGCAATGCTCAAATTACTTGAGAGAGGAGTGGTGGTAGTAGAGGATGGAGGTGAAGCAGGACATGAGTTTGTGGGAACTAGGGGGATCAAATCACTGCAGGGGTAGCTGCTAGGGAGATCACCGGAGTGGGGCATGGCAGCCGGCCTGAGGGAGAGCGTCGGTGTTGGCGGCGCTGTTTGGGGATGGCGGCACAGGAGAGAAGGCGTGAAGGAGAGAAGGAGATAGCGAGAGAAGAAGATGAGAAGAAAGAAAGTGGGCTGGTT] [+] EMBL CF282311 [TTTTTTTTTTTTATCATACTTTTCACTAGATTTTTATTTAATTGCAAATCTGTGAAAAATTATGCTGAGCCTCCACCGAATAAACCATGCTTAGGTGTCAAACAGGGAGACCACCAGTAAAACCTTAGTAGGTGAGTCACCTAGTAGTCAACCATGTCCCTGTGACAAAAACCATATCAGTGTGAACTCCATCCTGACCGAGCCTCGTTTTCCTCGTAGAGACCAAAACCAG TAGCAAGAAGAACCA CCATAACCAGAGAGTTTGAGAAGAAAAGAAAAATACAAGAGGGCAAAATCACCCAACAACAGGGTGGAGCAGGGGCCTCTAGCTCCATTAGGAACAGGTACCCCAGCTGAAGGAGGAGACGCTGATTCAGTAGAATCAACCAACCAA ] [-] EMBL CF340580 [ CATGTCCCTGTCACAAAAACCATATCAGTGTGAACTCCATCCTGACCGAGCCTCATTTTCCTCGTAGAGACCAAAACCAGTTAGCAAGAAGAACCACCCATAACCAGAGAGTTAGAGAAGAAAAGAAAAATACAAGAGGGCAAAATCACCCAACATCA GGTGGAGCAGGGG CTCCAGCTCCATTTGGAGCAGGTACCCCAGCTCAAGGAGGAGACGCTGATTCAGTAGAATCAACCAACCAATAGAAGTGGTGAGGGTTGTGGCCGGCAGAGTTGCCATTTGAGGCATTGGCCGTCTCCACAGCGACCATCACAGGAGTTGGGTACCAATAGCCATGGAGGACAGCAATGCTCAAATTACTTGAGAGAGGAGTGGTGGTAGTAGAGGATGGAGGTGAAGCAGGACATGAGTTTGTGGGAACTAGGGGGATCAAATCACTGCAGGGGTAGCTGCTAGGGAGATCACCGGAGTGGGGCATGGCAGCCGGCCTGAGGGAGAGCGTCGGTGTTGGCGGCGCTGTTTGGGGATGGCGGCACAGGAGA ] [-] EMBL CF327865 [ ACCCCATCCTGACCGAGCCTCGTTTTCCTCGTAGAGACCAAAACCAGTTAGCAAGAAGAACCACCCATAACCAGAGAG TGGAGAAGAAAAGAAAAATACAAGAGGGCAAACTCACCCAACATTA GGTGGAGCAGGGG CTCCAGCTCCATTAGGAGCAGGTACCCCAGCTCAAGGAGGAGACGCTGATTCAGTAGAATCAACCAACCAATAGAAGTGGTGAGGGTTGTGGCCGGCAGAGTTGCCATTTGAGGCATTGGCCGTCTCCACGGCGACCATCACAGGAGTTGAGTACCAATAGCCATGGAGGACAACAATGCTCAGATTCCTTGAGAGAGGAGAGGTGGTAGTAGAGGATGGAGGTAAAGCAGGATATGAGTTTGTGGGAACTAGGGGGATCAAATCACTGCAGGGGCAGCTGCTAGGGAGATCGCCGGAGTGGGGCGTGGCAGCCGGCCTGAGGGAGAGCGTCGGTGTTGGCGGCGCTGTTTGGGGATGGCGGCACAGGAGAGAAGGCGTGAAGGAGAGAAGGAGATAGCGAGAGAAGAAGATGAGAAGAAAGAAAGTGGGCTGGTT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_10544#0 TTTTTTTTTTTTTTTTTAAACACATAAGTAAATTCTTTATTTCTTCACATATACATTATA 60 consensus_10544#1 ------------------------------------------------------------ consensus_10544#0 CAGGGTTGTTGCATACATCAAATGCATCTCATACATTATTCGTCTAAAATAGAAATAGGG 120 consensus_10544#1 ------------------------------------------------------------ consensus_10544#0 AAAATTAAATAAAAATGTTGGGGTGATCTGGGACCACCCCTAATTGCTTTAGGAGATTTC 180 consensus_10544#1 ------------------------------------------------------------ consensus_10544#0 AAATATAAGATTTAGGCAAAAGAAAAAATTTAAAGTTGCTTGATGTCACATATTTTGCAA 240 consensus_10544#1 ------------------------------------------------------------ consensus_10544#0 CCAAACCATTTTGGGGCACAAAATTTGTAACATTAGCCATCTCTTAGTACTTTCCAAAAC 300 consensus_10544#1 ------------------------------------------------------------ consensus_10544#0 TATTTATTTCTTAGGTAAACTCTGAGTTTTTGGGCAATTGAAAATCAGTCCCTAAATTCA 360 consensus_10544#1 ------------------------------------------------------------ consensus_10544#0 AAGTAATCTCCATATTTTTAAAGTCTATGGTACTATAATGCAAAAGTTACAAATATCATA 420 consensus_10544#1 ------------------------------------------TTTTTTTTTTTTATCATA 18 ** ******* consensus_10544#0 CTTTTCACTAAATTTTTATTTAATTGCAAATCTGTGAAAAATTATGCTGAGCCTCCACCG 480 consensus_10544#1 CTTTTCACTAGATTTTTATTTAATTGCAAATCTGTGAAAAATTATGCTGAGCCTCCACCG 78 ********** ************************************************* consensus_10544#0 AATAAACCATGCTTAGGTGTCAAACAGGGAGACCACTAGTAAAACCTTAGTAGGTGAGTC 540 consensus_10544#1 AATAAACCATGCTTAGGTGTCAAACAGGGAGACCACCAGTAAAACCTTAGTAGGTGAGTC 138 ************************************ *********************** consensus_10544#0 ACCTAGTAGTCAACCATGTCCCTGTCACAAAAACCATATCAGTGTGAACTCCATCCTGAC 600 consensus_10544#1 ACCTAGTAGTCAACCATGTCCCTGTGACAAAAACCATATCAGTGTGAACTCCATCCTGAC 198 ************************* ********************************** consensus_10544#0 CGAGCCTCATTTTCCTCGTAGAGACCAAAACCAGTTAGCAAGAAGAACCACC-ATAACCA 659 consensus_10544#1 CGAGCCTCGTTTTCCTCGTAGAGACCAAAACCAGTTAGCAAGAAGAACCACCCATAACCA 258 ******** ******************************************* ******* consensus_10544#0 GAGAGTTAGAGAAGAAAAGAAAAATACAAGAGGGCAAAATCACCCAACATCAGGTGGAGC 719 consensus_10544#1 GAGAGTTAGAGAAGAAAAGAAAAATACAAGAGGGCAAAATCACCCAACATCAGGTGGAGC 318 ************************************************************ consensus_10544#0 AGGGGCTCCAGCTCCATTTGGAGCAGGTACCCCAGCTCAAGGAGGAGACGCTGATTCAGT 779 consensus_10544#1 AGGGGCTCCAGCTCCATTAGGAGCAGGTACCCCAGCTCAAGGAGGAGACGCTGATTCAGT 378 ****************** ***************************************** consensus_10544#0 AGAATCAACCAACCAATAGAAGCTGCAGTAGAAGCAAAAGAGGAGTTCAACTATATATTT 839 consensus_10544#1 AGAATCAACCAACCAATAGAAG-------------------------------------- 400 ********************** consensus_10544#0 TCACAACCACTGAATAATCAACAAAGAGGTAAACTAGATTAAGAGCATCATCCATGGCAT 899 consensus_10544#1 ------------------------------------------------------------ consensus_10544#0 ATAATCATGATTAGAAGTCAGATTATTTACAAATCAAGAATCTAGAGACCATATTATTTG 959 consensus_10544#1 ------------------------------------------------------------ consensus_10544#0 CATTACAAGGTTACAGTGGCACACATCTAACAAATACTTCTATTGTGAGACATTATGAGA 1019 consensus_10544#1 ------------------------------------------------------------ consensus_10544#0 AATAGAACAGAGAAATAGAAGGGGGAAAAGGGATATGGAGTTACTGGTGAGGGTTGTGGC 1079 consensus_10544#1 --------------------------------------------TGGTGAGGGTTGTGGC 416 **************** consensus_10544#0 CGGCAGAGTTGCCATTTGAGGCATTGGCCGTCTCCACAGCGACCATCACAGGAGTTGGGT 1139 consensus_10544#1 CGGCAGAGTTGCCATTTGAGGCATTGGCCGTCTCCACAGCGACCATCACAGGAGTTGGGT 476 ************************************************************ consensus_10544#0 ACCAATAGCCATGGAGGACAGCAATGCTCAAATTACTTGAGAGAGGAGTGGTGGTAGTAG 1199 consensus_10544#1 ACCAATAGCCATGGAGGACAGCAATGCTCAAATTACTTGAGAGAGGAGTGGTGGTAGTAG 536 ************************************************************ consensus_10544#0 AGGATGGAGGTGAAGCAGGACATGAGTTTGTGGGAACTAGGGGGATCAAATCACTGCAGG 1259 consensus_10544#1 AGGATGGAGGTGAAGCAGGACATGAGTTTGTGGGAACTAGGGGGATCAAATCACTGCAGG 596 ************************************************************ consensus_10544#0 GGTAGCTGCTAGGGAGATCACCGGAGTGGGGCATGGCAGCCGGCCTGAGGGAGAGCGTCG 1319 consensus_10544#1 GGTAGCTGCTAGGGAGATCACCGGAGTGGGGCATGGCAGCCGGCCTGAGGGAGAGCGTCG 656 ************************************************************ consensus_10544#0 GTGTTGGCGGCGCTGTTTGGGGATGGCGGCACAGGAGAAAA------------------- 1360 consensus_10544#1 GTGTTGGCGGCGCTGTTTGGGGATGGCGGCACAGGAGAGAAGGCGTGAAGGAGAGAAGGA 716 ************************************** ** consensus_10544#0 ------------------------------------------- consensus_10544#1 GATAGCGAGAGAAGAAGATGAGAAGAAAGAAAGTGGGCTGGTT 759 |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||