cluster # 10547

These datas are free for academic use only, please contact me for any other use.

Oryza sativa
cluster # 10547 cluster # 10547 Sequences # 7 consensus # 4

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_10547#0 length = 786 sequences # 2
consensus_10547#1 length = 524 sequences # 1

consensus_10547#2 length = 520 sequences # 3
consensus_10547#3 length = 284 sequences # 1

consensusID : consensus_10547#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 786
fasta sequence

                              [CAGATTTAGAGGAAGAGGAAAATATGTCTGATATGTCATCCATGTTGAATCTTCAAGGTCCAGATAAGCTTGGCAATAATCAACCTTTGGATATTGTACCTTTGAACTCCATTCCCTTCAGGCAAGAGGTGGCTTTTCACCAAAAAGTGGATTCGAGTAAAGAAGAGGTTCCGGTTCCTCAATGGATGAAACAACTCGATAACTACAAAGATGGGGACTGGACAGTGTTCCTTCAAATAAGGGATGATGGACATAAAGATTGGTTCTACTATCATCAGAAATACAAAAAACAGTTACGGTCCAGGTCAGACGTTAAACTATTTTTGAAAACAACCCTAGTCAACGGGACAGATATGTTCAAAGGACAAAAGCTACAGAAGAAGAGGACAATGGATTCCTATGGCGAACGTAGTGGGGGAAGTAAATCCAACAAGGGAGAAAAGAAGAATACCAGTTCTAAGAAAAGCAAGAAGGCCTTGAGTAATGGAGATTACCCTGTGATGCCGAAGAAGCTGACTCTGCCTCATGGTTTTGTGTAATTTCGATTCAAACTGCATATGCCAAAAGCTGGGAGAGGGAACAACGAATAAGCCTATTACTTGGCTAGCTAAACTATTTTCCATGGTACCCTTAAGAATAAGTGCACTCTGCATCAAACCGGTGATGATGCTTCTCAGTTATCAGTTGNTTTTTCGNTGATGGTTGCTTGNAACTCGAGTACTGNACCGGTNATCTGCATGNGCTAGCTNTATGGTTGGATTCAAATTTGATAAAAAAAAAAAAAAA]

[+] EMBL CA764936             [CAGATTTAGAGGAAGAGGAAAATATGTCTGATATGTCATCCATGTTGAATCTTCAAGGTCCAGATAAGCTTGGCAATAATCAACCTTTGGATATTGTACCTTTGAACTCCATTCCCTTCAGGCAAGAGGTGGCTTTTCACCAAAAAGTGGATTCGAGTAAAGAAGAGGTTCCGGTTCCTCAATGGATGAAACAACTCGATAACTACAAAGATGGGGACTGGACAGTGTTCCTTCAAATAAGGGATGATGGACATAAAGATTGGTTCTACTATCATCAGAAATACAAAAAACAGTTACGGTCCAGGTCAGACGTTAAACTATTTTTGAAAACAACCCTAGTCAACGGGACAGATATGTTCAAAGGACAAAAGCTACAGAAGAAGAGGACAATGGATTCCTATGGCGAACGTAGTGGGGGAAGTAAATCCAACAAGGGAGAAAAGAAGAATACCAGTTCTAAGAAAAGCAAGAAGGCCTTGAGTAATGGAGATTACCCTGTGATGCCGAAGAAGCTGACTCTGCCTCATGGTTTTGTGTAATTTCGATTCAAACTGCATATGCCAAAAGCTGGGAGAGGGAACAACGAATAAGCCTATTACTTGGCTAGCTAAACTATTTTCCATGGTACCCTTAAGAATAAGTGCACTCTGCATCAAACCGGTGATGATGCTTCTCAGTTATCAGTTGNTTTTTCGNTGATGGTTGCTTGNAACTCGAGTACTGNACCGGTNATCTGCATGNGCTAGCTNTATGGTTGGATTCAAAT                    ]
[-] EMBL CA760936             [                                                                                                              ATTCCCTTCAGGCAAGAGGTGGCTTTTCACCAAAAAGTGGATTCGAGTAAAGAAGAGGTTCCGGTTCCTCAATGGATGAAACAACTCGATAACTACAAAGATGGGGACTGGACAGTGTTCCTTCAAATAAGGGATGATGGACATAAAGATTGGTTCTACTATCATCAGAAATACAAAAAACAGTTACGGTCCAGGTCAGACGTTAAACTATTTTTGAAAACAACCCTAGTCAACGGGACAGATATGTTCAAAGGCCAAAAGCTACAGAAGAAGAGGACAATGGATTCCTATGGCGAACGTAGTGGGGGAAGTAAATCCACCAAGGGAGAAAAGAAGAATACCAGTTCTAAGAAAAGCAAGAAGGCCTTGAGTAATGGAGATTACCCTGTGATGCCGAAGAAGCTGACTCTGCCTCATGGTTTTGTGTAATTTCGATTCAAACTGCATATGCCAAAAGCTGGGAGAGGGAACAACGAATAAGCCTATTACTTGGCTAGCTAAACTATTTTCCATAGTACCCTTAAGAATAAGTGCCCTCTGCATCAAACCGTTGATGATGCTTCTCAGTTATCAGTTGTTTTTTCGTTGATGTTTGCTTGTAACTCGAGTACTGTACCGTTAATCTGCATGTGCTAGCTATATGGTTGGATTCAAATTTGATAAAAAAAAAAAAAAA]




>consensus_10547#0
CAGATTTAGAGGAAGAGGAAAATATGTCTGATATGTCATCCATGTTGAATCTTCAAGGTC
CAGATAAGCTTGGCAATAATCAACCTTTGGATATTGTACCTTTGAACTCCATTCCCTTCA
GGCAAGAGGTGGCTTTTCACCAAAAAGTGGATTCGAGTAAAGAAGAGGTTCCGGTTCCTC
AATGGATGAAACAACTCGATAACTACAAAGATGGGGACTGGACAGTGTTCCTTCAAATAA
GGGATGATGGACATAAAGATTGGTTCTACTATCATCAGAAATACAAAAAACAGTTACGGT
CCAGGTCAGACGTTAAACTATTTTTGAAAACAACCCTAGTCAACGGGACAGATATGTTCA
AAGGACAAAAGCTACAGAAGAAGAGGACAATGGATTCCTATGGCGAACGTAGTGGGGGAA
GTAAATCCAACAAGGGAGAAAAGAAGAATACCAGTTCTAAGAAAAGCAAGAAGGCCTTGA
GTAATGGAGATTACCCTGTGATGCCGAAGAAGCTGACTCTGCCTCATGGTTTTGTGTAAT
TTCGATTCAAACTGCATATGCCAAAAGCTGGGAGAGGGAACAACGAATAAGCCTATTACT
TGGCTAGCTAAACTATTTTCCATGGTACCCTTAAGAATAAGTGCACTCTGCATCAAACCG
GTGATGATGCTTCTCAGTTATCAGTTGNTTTTTCGNTGATGGTTGCTTGNAACTCGAGTA
CTGNACCGGTNATCTGCATGNGCTAGCTNTATGGTTGGATTCAAATTTGATAAAAAAAAA
AAAAAA

consensusID : consensus_10547#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 524
fasta sequence

                              [TCCAGGTCAGACGTTAAACTATTGTTTGAAACAACCCTAGTCAACGGGACAGATATGTTCAAAGGACCAAAGCTACAGAAGAAGAGGACAATGGATTCCTATGGCGAACGTAGTGGGGGAAGTAAATCCAACAAGGGAGAAAAGAAGAATACCAGTTCTAAGAAAAGCAAGAAGGCCTTGAGTAATGGAGATTACCCTGTGATGCCGAAGAAGCTGACTCTGCCTCATGGTTTTGTGTAATTTCGATTCAAACTGCATATGCCAAAGCTGGGAGAGGGAACACGAATAAGCCTATTACTTGGCTAGCTAAACTATTTTCCATGGTACCCTTAAGAATAAGTGCACTCTGCATCAACCGTTGATGATGCTTCTCAGTTATCAGTTGTTTTTTCGTTGATGTTTGCTTGTAACTCGAGTACTGTACCGTTAATCTGCATGTGCTAGCTATATGGTTGGATTCAAATTTGATATTGGCTGATAGCATTATGTTGGATGATATTTAGTAAAAAAAAAAATAATAAAAA]

[+] EMBL BI801070             [TCCAGGTCAGACGTTAAACTATTGTTTGAAACAACCCTAGTCAACGGGACAGATATGTTCAAAGGACCAAAGCTACAGAAGAAGAGGACAATGGATTCCTATGGCGAACGTAGTGGGGGAAGTAAATCCAACAAGGGAGAAAAGAAGAATACCAGTTCTAAGAAAAGCAAGAAGGCCTTGAGTAATGGAGATTACCCTGTGATGCCGAAGAAGCTGACTCTGCCTCATGGTTTTGTGTAATTTCGATTCAAACTGCATATGCCAAAGCTGGGAGAGGGAACACGAATAAGCCTATTACTTGGCTAGCTAAACTATTTTCCATGGTACCCTTAAGAATAAGTGCACTCTGCATCAACCGTTGATGATGCTTCTCAGTTATCAGTTGTTTTTTCGTTGATGTTTGCTTGTAACTCGAGTACTGTACCGTTAATCTGCATGTGCTAGCTATATGGTTGGATTCAAATTTGATATTGGCTGATAGCATTATGTTGGATGATATTTAGTAAAAAAAAAAATAATAAAAA]




>consensus_10547#1
TCCAGGTCAGACGTTAAACTATTGTTTGAAACAACCCTAGTCAACGGGACAGATATGTTC
AAAGGACCAAAGCTACAGAAGAAGAGGACAATGGATTCCTATGGCGAACGTAGTGGGGGA
AGTAAATCCAACAAGGGAGAAAAGAAGAATACCAGTTCTAAGAAAAGCAAGAAGGCCTTG
AGTAATGGAGATTACCCTGTGATGCCGAAGAAGCTGACTCTGCCTCATGGTTTTGTGTAA
TTTCGATTCAAACTGCATATGCCAAAGCTGGGAGAGGGAACACGAATAAGCCTATTACTT
GGCTAGCTAAACTATTTTCCATGGTACCCTTAAGAATAAGTGCACTCTGCATCAACCGTT
GATGATGCTTCTCAGTTATCAGTTGTTTTTTCGTTGATGTTTGCTTGTAACTCGAGTACT
GTACCGTTAATCTGCATGTGCTAGCTATATGGTTGGATTCAAATTTGATATTGGCTGATA
GCATTATGTTGGATGATATTTAGTAAAAAAAAAAATAATAAAAA

consensusID : consensus_10547#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 520
fasta sequence

                              [AGTAGCTAGTGTTCTCTGGAAATCCAAAACAGTTCGGTCCAGTCAGACGTAACTATTTTGAAAACAACCCTAGTTACGGGGNAGATATGTCAAGGCCAAAAGCTACAGAAGAAGAGGCCAATGATTTCTTTGGCGANNGTAGTGGGGGAAGTAAATCCAACAAGGGAGAAAAGAAGAATNCCAGTTCTAAGAAAAGCAAGAAGGCCCTGAGTAATGGAGATTACCCTGTGATGCCGAAGAAGCTGACTCTGCCTCATGGTTTTGTGTAATTTCGATTCAAACTGCATATGCCAAAAGCTGGGAGAGGGAACAACGAATAAGCCTATTACTTGGCTAGCTAAACTATTTT-CCA-TGGTACCCTTAAGAATAAGTGCA-CTCTGCATCAAACCG-TTGATGATGCTTCTCAGTTATCA-GTTGTTTTTTCGTTGATGTTTGCTTGTAACTCGAGTACTGTACCGTTAATCTGCATGTGCTAGCTATATGGTTGGATTCCAA---AAAAAAAAAAAAAATAAAAAAAAAA]

[-] EMBL CA760549             [AGTAGCTAGTGTTCTCTGGAAATCCAAAACAGTTCGGTCCAGTCAGACGTAACTATTTTGAAAACAACCCTAGTTACGGGGNAGATATGTCAAGGCCAAAAGCTACAGAAGAAGAGGCCAATGATTTCTTTGGCGANNGTAGTGGGGGAAGTAAATCCAACAAGGGAGAAAAGAAGAATNCCAGTTCTAAGAAAAGCAAGAAGGCCCTGAGTAATGGAGATTACCCTGTGATGCCGAAGAAGCTGACTCTGCCTCATGGTTTTGTGTAATTTCGATTCAAACTGCATATGCCAAAAGCTGGGAGAGGGAACAACGAATAAGCCTATTACTTGGCTAGCTAAACTATTTT CCA TGGTACCCTTAAGAATAAGTGCA CTTTGCATCAAACCG TTGATGATGCTTTTCAGTTATCA GTTGTTTTTTCGTTGATGTTTGCTTGTAACTCGAGTACTGTACCGTTAATCTGCATGTGCTAGCTATATGGTTGGATTCCAA   AAAAAAAAAAAAAA           ]
[+] EMBL BI802190             [                                                                                                                                                                                                                                                 GCTGACTCTGCCTCATGGTTTTGTGTAATTTCGATTCCAACTGCATATGCCCAAAGCTGGGAGAGGGAACCACGAATAAGCCTATTACTTGGCTAGCTAAACTATTTTCCCACTGGTACCCTTAAGAATAAGTGCACCTCTGCATCCAACCGCTTGATGATGCTTCTCAGTTATCACGTTGTTTTTTCGTTGATGTTTGCTTGTAACTCGAGTACTGTACCGTTAATCTGCATGTGCTAGCTATATGGTTGGATTCCAA   AAAAAAAA                 ]
[+] EMBL BI801609             [                                                                                                                                                                                                                                                                                                                                                                                  AAGTGCA CTCTGCATC AACCG TTGATGATGCTTCTCAGTTATCA GTTGTTTTTTCGTTGATGTTTGCTTGTAACTCGAGTACTGTACCGTTAATCTGCATGTGCTAGCTATATGGTTGGATTCCAATTTGATAAAAAAAAAAATAAAAAAAAAA]




>consensus_10547#2
AGTAGCTAGTGTTCTCTGGAAATCCAAAACAGTTCGGTCCAGTCAGACGTAACTATTTTG
AAAACAACCCTAGTTACGGGGNAGATATGTCAAGGCCAAAAGCTACAGAAGAAGAGGCCA
ATGATTTCTTTGGCGANNGTAGTGGGGGAAGTAAATCCAACAAGGGAGAAAAGAAGAATN
CCAGTTCTAAGAAAAGCAAGAAGGCCCTGAGTAATGGAGATTACCCTGTGATGCCGAAGA
AGCTGACTCTGCCTCATGGTTTTGTGTAATTTCGATTCAAACTGCATATGCCAAAAGCTG
GGAGAGGGAACAACGAATAAGCCTATTACTTGGCTAGCTAAACTATTTTCCATGGTACCC
TTAAGAATAAGTGCACTCTGCATCAAACCGTTGATGATGCTTCTCAGTTATCAGTTGTTT
TTTCGTTGATGTTTGCTTGTAACTCGAGTACTGTACCGTTAATCTGCATGTGCTAGCTAT
ATGGTTGGATTCCAAAAAAAAAAAAAAAATAAAAAAAAAA

consensusID : consensus_10547#3
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 284
fasta sequence

                              [NATTTTNAACCACNAGGGAGAAGGGNCCAATACCAGTAACTAAGAAANTNNAGAAGGCCTTGAGTAATGGAGATTACCCTGTGATGCCGAANAAGCTGACTCTGCCTCATGGTTTTGTGTAATTTCGATTCAAACTGCATATGCCAAAAGCTGGGAGAGGGAACAACGAATAAGCCTATTACTTGGCTAGCTAAACTATTTTCCATGGTACCCTTAAGAATAAGTGCACTCTGCATCAAACCGTTGATGATGCTTCTCAGTTATCAGTTGTTTTTTCGTTGATG]

[+] EMBL AA752963             [NATTTTNAACCACNAGGGAGAAGGGNCCAATACCAGTAACTAAGAAANTNNAGAAGGCCTTGAGTAATGGAGATTACCCTGTGATGCCGAANAAGCTGACTCTGCCTCATGGTTTTGTGTAATTTCGATTCAAACTGCATATGCCAAAAGCTGGGAGAGGGAACAACGAATAAGCCTATTACTTGGCTAGCTAAACTATTTTCCATGGTACCCTTAAGAATAAGTGCACTCTGCATCAAACCGTTGATGATGCTTCTCAGTTATCAGTTGTTTTTTCGTTGATG]




>consensus_10547#3
NATTTTNAACCACNAGGGAGAAGGGNCCAATACCAGTAACTAAGAAANTNNAGAAGGCCT
TGAGTAATGGAGATTACCCTGTGATGCCGAANAAGCTGACTCTGCCTCATGGTTTTGTGT
AATTTCGATTCAAACTGCATATGCCAAAAGCTGGGAGAGGGAACAACGAATAAGCCTATT
ACTTGGCTAGCTAAACTATTTTCCATGGTACCCTTAAGAATAAGTGCACTCTGCATCAAA
CCGTTGATGATGCTTCTCAGTTATCAGTTGTTTTTTCGTTGATG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_10547#1      ------------------------------------------------------------
consensus_10547#3      ------------------------------------------------------------
consensus_10547#0      CAGATTTAGAGGAAGAGGAAAATATGTCTGATATGTCATCCATGTTGAATCTTCAAGGTC 60
consensus_10547#2      ------------------------------------------------------------
                                                                                   

consensus_10547#1      ------------------------------------------------------------
consensus_10547#3      ------------------------------------------------------------
consensus_10547#0      CAGATAAGCTTGGCAATAATCAACCTTTGGATATTGTACCTTTGAACTCCATTCCCTTCA 120
consensus_10547#2      ------------------------------------------------------------
                                                                                   

consensus_10547#1      ------------------------------------------------------------
consensus_10547#3      ------------------------------------------------------------
consensus_10547#0      GGCAAGAGGTGGCTTTTCACCAAAAAGTGGATTCGAGTAAAGAAGAGGTTCCGGTTCCTC 180
consensus_10547#2      ------------------------------------------------------------
                                                                                   

consensus_10547#1      ------------------------------------------------------------
consensus_10547#3      ------------------------------------------------------------
consensus_10547#0      AATGGATGAAACAACTCGATAACTACAAAGATGGGGACTGGACAGTGTTCCTTCAAATAA 240
consensus_10547#2      ------------------------------------------------------------
                                                                                   

consensus_10547#1      -----------------------------------------------------------T 1
consensus_10547#3      ------------------------------------------------------------
consensus_10547#0      GGGATGATGGACATAAAGATTGGTTCTACTATCATCAGAAATACAAAAAACAGTTACGGT 300
consensus_10547#2      ------------------AGTAG--CTAGTGTTCTCTGGAA-ATCCAAAACAGTT-CGGT 38
                                                                                   

consensus_10547#1      CCAGGTCAGACGTTAAACTATTGTTTGAAACAACCCTAGTCAACGGGACAGATATGTTCA 61
consensus_10547#3      ------------------------------------------------------------
consensus_10547#0      CCAGGTCAGACGTTAAACTATTTTTGAAAACAACCCTAGTCAACGGGACAGATATGTTCA 360
consensus_10547#2      CCAG-TCAGACGT--AACTATTTT-GAAAACAACCCTAGTTA-CGGGGNAGATATGTC-- 91
                                                                                   

consensus_10547#1      AAGGACCAAAGCTACAGAAGAAGAGGACAATGGATTCCTATGGCGAACGTAGTGGGGGAA 121
consensus_10547#3      ---------------------------------------------------------NAT 3
consensus_10547#0      AAGGACAAAAGCTACAGAAGAAGAGGACAATGGATTCCTATGGCGAACGTAGTGGGGGAA 420
consensus_10547#2      AAGGCCAAAAGCTACAGAAGAAGAGGCCAATG-ATTTCTTTGGCGANNGTAGTGGGGGAA 150
                                                                                 * 

consensus_10547#1      GTAAATCCAACAAGGGAGAAAAGAAGAATACCAGTT-CTAAGAAAAGCAAGAAGGCCTTG 180
consensus_10547#3      TTTNAACCA-CNAGGGAGAAGGGNCCAATACCAGTAACTAAGAAANTNNAGAAGGCCTTG 62
consensus_10547#0      GTAAATCCAACAAGGGAGAAAAGAAGAATACCAGTT-CTAAGAAAAGCAAGAAGGCCTTG 479
consensus_10547#2      GTAAATCCAACAAGGGAGAAAAGAAGAATNCCAGTT-CTAAGAAAAGCAAGAAGGCCCTG 209
                        *  * *** * ********  *   *** *****  ********    ******** **

consensus_10547#1      AGTAATGGAGATTACCCTGTGATGCCGAAGAAGCTGACTCTGCCTCATGGTTTTGTGTAA 240
consensus_10547#3      AGTAATGGAGATTACCCTGTGATGCCGAANAAGCTGACTCTGCCTCATGGTTTTGTGTAA 122
consensus_10547#0      AGTAATGGAGATTACCCTGTGATGCCGAAGAAGCTGACTCTGCCTCATGGTTTTGTGTAA 539
consensus_10547#2      AGTAATGGAGATTACCCTGTGATGCCGAAGAAGCTGACTCTGCCTCATGGTTTTGTGTAA 269
                       ***************************** ******************************

consensus_10547#1      TTTCGATTCAAACTGCATATGCCAAA-GCTGGGAGAGGGAACA-CGAATAAGCCTATTAC 298
consensus_10547#3      TTTCGATTCAAACTGCATATGCCAAAAGCTGGGAGAGGGAACAACGAATAAGCCTATTAC 182
consensus_10547#0      TTTCGATTCAAACTGCATATGCCAAAAGCTGGGAGAGGGAACAACGAATAAGCCTATTAC 599
consensus_10547#2      TTTCGATTCAAACTGCATATGCCAAAAGCTGGGAGAGGGAACAACGAATAAGCCTATTAC 329
                       ************************** **************** ****************

consensus_10547#1      TTGGCTAGCTAAACTATTTTCCATGGTACCCTTAAGAATAAGTGCACTCTGCATCAA-CC 357
consensus_10547#3      TTGGCTAGCTAAACTATTTTCCATGGTACCCTTAAGAATAAGTGCACTCTGCATCAAACC 242
consensus_10547#0      TTGGCTAGCTAAACTATTTTCCATGGTACCCTTAAGAATAAGTGCACTCTGCATCAAACC 659
consensus_10547#2      TTGGCTAGCTAAACTATTTTCCATGGTACCCTTAAGAATAAGTGCACTCTGCATCAAACC 389
                       ********************************************************* **

consensus_10547#1      GTTGATGATGCTTCTCAGTTATCAGTTGTTTTTTCGTTGATGTTTGCTTGTAACTCGAGT 417
consensus_10547#3      GTTGATGATGCTTCTCAGTTATCAGTTGTTTTTTCGTTGATG------------------ 284
consensus_10547#0      GGTGATGATGCTTCTCAGTTATCAGTTGNTTTTTCGNTGATGGTTGCTTGNAACTCGAGT 719
consensus_10547#2      GTTGATGATGCTTCTCAGTTATCAGTTGTTTTTTCGTTGATGTTTGCTTGTAACTCGAGT 449
                       * ************************** ******* *****                  

consensus_10547#1      ACTGTACCGTTAATCTGCATGTGCTAGCTATATGGTTGGATTCAAATTTGATATTGGCTG 477
consensus_10547#3      ------------------------------------------------------------
consensus_10547#0      ACTGNACCGGTNATCTGCATGNGCTAGCTNTATGGTTGGATTCAAATTTGATAAAAAAAA 779
consensus_10547#2      ACTGTACCGTTAATCTGCATGTGCTAGCTATATGGTTGGATTCCAAAAAAAAAAAAAAAA 509
                                                                                   

consensus_10547#1      ATAGCATTATGTTGGATGATATTTAGTAAAAAAAAAAATAATAAAAA 524
consensus_10547#3      -----------------------------------------------
consensus_10547#0      AAAAAAA---------------------------------------- 786
consensus_10547#2      TAAAAAAAAAA------------------------------------ 520