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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_10551#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1008 fasta sequence
[CGCCGCCTCCGCCGCGTGCGAAGCTTGGAGAGTTCGAGCACGGGCATGGCGTCCTCGGGGGGAGCGGCGATCTCGGCGGGGCCCACGCCGCCGTCGGCGGCGGCGGCGTCGTCGTCGGTGGACTGGCACCTGCGGCCGCCGAACCCGAAGAACCCGGTGGTGTTCTTCGACGTGACCATCGGGTCCATCCCCGCCGGCCGCATCAAGATGGAGCTCTTCGCCGACATCGTCCCCAAGACGGCGGAGAACTTCCGGCAGTTCTGCACTGGAGAGCACAGGAAATCAGGTTTACCACAGGGATATAAGGGTTGTCAGTTCCATCGAGTGATCAAAGATTTCATGATTCAGGGAGGTGACTATATGAAGGGGGATGGTACTGGATGCACGTCAATCTATGGTACCAAATTTGATGATGAAAACTTCATTGCAAAGCATACTGGTCCTGGCCTACTTTCTATGGCAAATAGTGGGGTGAACTCTAATGGATCTCAGTTCTTTATAACTTGTGCAAAATGTGAATGGCTGGACAACAAGCATGTGGTTTTTGGGAGGGTGCTAGGGGATGGTATGCTTGCTGTGCGGAAGATCGAGAATGTTGCAACTGGACCAAACAACCGACCGAAGCTCGCATGTGTCAT-AAGCGAGTGTGGTGAGATGTAGTTT-GTA-CCTTGAGGGTGACTATTCTTGGTGCTGCTGATGTAGAAATAGACTTTGCATGGATGAAACTACTCCAGCATTGGAAGCA-CCATAAGACATAGCTGTACCAAAGTATCAATTCACCTTGAATGAGTGTCTGTCTATACACTGATGAAAGTTCAT-CCTCACTTCGTCAGTGACATCAGTTGTCACTTAAACTGTTGATTAATATTCTAAACAGGGAATATGTGTGTCTGTTCGACTTGAACCTTCGTCATGTCAAGTGGAGCTGGCATTATATTCAGCTGAACATGCTTGATGAAATGATGAGTCGATCTGTGGTTGCACCCATTTTATAAAGTATACTAAACT]
[+] EMBL AK071076 [CGCCGCCTCCGCCGCGTGCGAAGCTTGGAGAGTTCGAGCACGGGCATGGCGTCCTCGGGGGGAGCGGCGATCTCGGCGGGGCCCACGCCGCCGTCGGCGGCGGCGGCGTCGTCGTCGGTGGACTGGCACCTGCGGCCGCCGAACCCGAAGAACCCGGTGGTGTTCTTCGACGTGACCATCGGGTCCATCCCCGCCGGCCGCATCAAGATGGAGCTCTTCGCCGACATCGTCCCCAAGACGGCGGAGAACTTCCGGCAGTTCTGCACTGGAGAGCACAGGAAATCAGGTTTACCACAGGGATATAAGGGTTGTCAGTTCCATCGAGTGATCAAAGATTTCATGATTCAGGGAGGTGACTATATGAAGGGGGATGGTACTGGATGCACGTCAATCTATGGTACCAAATTTGATGATGAAAACTTCATTGCAAAGCATACTGGTCCTGGCCTACTTTCTATGGCAAATAGTGGGGTGAACTCTAATGGATCTCAGTTCTTTATAACTTGTGCAAAATGTGAATGGCTGGACAACAAGCATGTGGTTTTTGGGAGGGTGCTAGGGGATGGTATGCTTGCTGTGCGGAAGATCGAGAATGTTGCAACTGGACCAAACAACCGACCGAAGCTCGCATGTGTCAT AAGCGAGTGTGGTGAGATGTAGTTT GTA CCTTGAGGGTGACTATTCTTGGTGCTGCTGATGTAGAAATAGACTTTGCATGGATGAAACTACTCCAGCATTGGAAGCA CCATAAGACATAGCTGTACCAAAGTATCAATTCACCTTGAATGAGTGTCTGTCTATACACTGATGAAAGTTCAT CCTCACTTCGTCAGTGACATCAGTTGTCACTTAAACTGTTGATTAATATTCTAAACAGGGAATATGTGTGTCTGTTCGACTTGAACCTTCGTCATGTCAAGTGGAGCTGGCATTATATTCAGCTGAACATGCTTGATGAAATGATGAGTCGATCTGTGGTTGCACCCATTTTATAAAGTATACTAAACT]
[-] EMBL AU063697 [ CCGAAGCTCGCATGTGTCATAAAGCGAGTGTGGTGAGATGTAGTTTGGTACCCTTGAGGGTGACTATTCCTGGTGCTGCTGATGTAGAAATAGACTTTGCATGGATGAAACTACTCCAGCATTGGAAGCACCCATAAGACATAGCTGTACCAAAGTATCAATTCACCTTGAATGAGTGTCTGTCTATACACTGATGAAAGTTCAT CCTCACTTCGTCAGTGACATCAGTTGTCACTTAAACTGTTGATTAATATTCTAAACAGGGAATATGTGTGTCTGTTCGACTTGAACCTTCGTCATGTCAAGTGGAGCTGGCATTATATTCAGCTGAACATGCTTGATGAAATGATGAGTCGATCTGT GTTGCACC ]
[-] EMBL AU063640 [ GTA CCTTGAGGGTGACTATTCTTGGTGCTGCTGATGTAGAAATAGACTTTGCATGGATGAAACTACTCCAGCATTGGAAGCA CCATAAGACATAGCTGTACCAAAGTATCAATTCACCTTGAATGAGTGTCTGTCTATACACTGATGAAAGTTCATCCCTCACTTCGTCAGTGACATCAGTTGTCACTTAAACTGTTGATTAATATTCTAAACAGGGAATATGTGTGTCTGTTCGACTTGAACCTTCGTCATGTCAAGTGGAGCTGGCATTATATTCAGCTGAACATGCTTGATGAAATGATGAGTCGATCTGTGG TGCACC ]
consensusID : consensus_10551#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 628 fasta sequence
[CCTCCGCCGCGTGCGAAGCTTGGAGAGTTCGAGCACGGGCATGGCGTCCTCGGGGGGAGCGGCGATCTCGGCGGGGCCCACGCCGCCGTCGGCGGCGGCGGCGTCGTCGGTGGACTGGCACCTGCGGCCGCCGAACCCGAAGAACCCGGTGGTGTTCTTCGACGTGACCATCGGGTCCATCCCCGCCGGCCGCATCAAGATGGAGCTCTTCGCCGACATCGTCCCCAAGACGGCGGAGAACTTCCGGCAGTTCTGCACCGGAGAGCACAGGAAATCGGGTTTACCACAGGGATATAAGGGTTGTCAGTTCCATCGAGTGATCAAAGATTTCATGATTCAGGGAGGTGACTATATGAAGGGGGATGGTACTGGATGCACGTCAATCTATGGTACCTAATTTGATGATGAAAACTTCCTTGGCGAGCATACTGGTCCTGCCCTACTTTCTTTGGCCAATAGTGGGGTGACCTCTAGTGGATCCTCCGTTCTTTATAACTTGTTGCAAATTGTGAATGGCTGGACCACAACGCTTGTTGGTTTTGGGAGGGTCCTTGGGGGATGGTATGCTTGCTGTCCCGCAGAATTAAAATTGTTCANACTGGACCCAGCCAATCGACCACGCCCCGCT]
[+] EMBL CA753602 [CCTCCGCCGCGTGCGAAGCTTGGAGAGTTCGAGCACGGGCATGGCGTCCTCGGGGGGAGCGGCGATCTCGGCGGGGCCCACGCCGCCGTCGGCGGCGGCGGCGTCGTCGGTGGACTGGCACCTGCGGCCGCCGAACCCGAAGAACCCGGTGGTGTTCTTCGACGTGACCATCGGGTCCATCCCCGCCGGCCGCATCAAGATGGAGCTCTTCGCCGACATCGTCCCCAAGACGGCGGAGAACTTCCGGCAGTTCTGCACCGGAGAGCACAGGAAATCGGGTTTACCACAGGGATATAAGGGTTGTCAGTTCCATCGAGTGATCAAAGATTTCATGATTCAGGGAGGTGACTATATGAAGGGGGATGGTACTGGATGCACGTCAATCTATGGTACCTAATTTGATGATGAAAACTTCCTTGGCGAGCATACTGGTCCTGCCCTACTTTCTTTGGCCAATAGTGGGGTGACCTCTAGTGGATCCTCCGTTCTTTATAACTTGTTGCAAATTGTGAATGGCTGGACCACAACGCTTGTTGGTTTTGGGAGGGTCCTTGGGGGATGGTATGCTTGCTGTCCCGCAGAATTAAAATTGTTCANACTGGACCCAGCCAATCGACCACGCCCCGCT]
consensusID : consensus_10551#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 618 fasta sequence
[GATGGTTACCATTCTGATGTGGGAGCGGCCATCGAGTGATCAAAGATTTCATGATTCAGGGAGGTGACTATATGAAGGGGGATGGTACTGGATGCACGTCAATCTATGGTACCAAATTTGATGATGAAAACTTCATTGCAAAGCATACTGGTCCTGGCCTACTTTCTATGGCAAATAGTGGGGTGAACTCTAATGGATCTCAGTTCTTTATAACTTGTGCAAAATGTGAATGGCTGGACAACAAGCATGTGGTTTTTGGGAGGGTGCTAGGGGATGGTATGCTTGCTGTGCGGAAGATCGAGAATGTTGCAACTGGACCAAACAACCGACCGAAGCTCGCATGTGTCATAAGCGAGTGTGGTGAGATGTAGTTTGTACCTTGAGGGTGACTATTCTTGGTGCTGCTGATGTAGAAATAGACTTTGCATGGATGAAACTACTCCAGCATTGGAAGCACCATAAGACATAGCTGTACCAAAGTATCAATTCACCTTGAATGAGTGTCTGTCTATACACTGATGAAAGTTCATCCTCACTTCGTCAGTGACATCAGTTGTCACTTAAACTGTTGATTAATATTCTAAACAGGGAATATGTGTGTCTGTTCGACTTGAAAAA]
[+] EMBL BI306525 [GATGGTTACCATTCTGATGTGGGAGCGGCCATCGAGTGATCAAAGATTTCATGATTCAGGGAGGTGACTATATGAAGGGGGATGGTACTGGATGCACGTCAATCTATGGTACCAAATTTGATGATGAAAACTTCATTGCAAAGCATACTGGTCCTGGCCTACTTTCTATGGCAAATAGTGGGGTGAACTCTAATGGATCTCAGTTCTTTATAACTTGTGCAAAATGTGAATGGCTGGACAACAAGCATGTGGTTTTTGGGAGGGTGCTAGGGGATGGTATGCTTGCTGTGCGGAAGATCGAGAATGTTGCAACTGGACCAAACAACCGACCGAAGCTCGCATGTGTCATAAGCGAGTGTGGTGAGATGTAGTTTGTACCTTGAGGGTGACTATTCTTGGTGCTGCTGATGTAGAAATAGACTTTGCATGGATGAAACTACTCCAGCATTGGAAGCACCATAAGACATAGCTGTACCAAAGTATCAATTCACCTTGAATGAGTGTCTGTCTATACACTGATGAAAGTTCATCCTCACTTCGTCAGTGACATCAGTTGTCACTTAAACTGTTGATTAATATTCTAAACAGGGAATATGTGTGTCTGTTCGACTTGAAAAA]
[+] EMBL CB964769 [ TCAAAGATTTCATGATTCAGGGAGGTGACTATATGAAGGGGGATGGTACTGGATGCACGTCAATCTATGGTACCAAATTTGATGATGAAAACTTCATTGCAAAGCATACTGGTCCTGGCCTACTTTCTATGGCAAATAGTGGGGTGAACTCTAATGGATCTCAGTTCTTTATAACTTGTGCAAAATGTGAATGGCTGGACAACAAGCATGTGGTTTTTGGGAGGGTGCTAGGGGATGGTATGCTTGCTGTGCGGAAGATCGAGAATGTTGCAACTGGACCAAACAACCGAACGAAGCTCGCATGTGTCATAAGCGAGTGTGGTGAGATGTAGTTTGTACCTTGAGGG ]
consensusID : consensus_10551#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 369 fasta sequence
[CATGTGGGAGCGGCCATCGAGTGATCCAAGCATTTCATGATTCAAGAGGTGACTATATGAAGGGGGATGGTACTGGATGCACGTCAATCTATGGTACCAAATTTGATGATGACAACTTCATTGCAAAGCATACTGGTCCTGGCCTACTTTCTATGGCAAATAGTGGGGTGAACTCTAATGGATCTCAGTTCTTTATAACTTGTGCAAAATGTGAATGGCTGGACACACAAGCATGTGGTTTTTGGGCAGGGTGCTAGGGGATGGTATGCTTGCTGTGCGGACGATCGCAGCACTGTTGCAACTGGACACAAACAACCGACCGAAGCTCGCATGTGTCATAAGCGAGTGTGGTGAGATGTCAGAAGTCCT]
[+] EMBL CB966198 [CATGTGGGAGCGGCCATCGAGTGATCCAAGCATTTCATGATTCAAGAGGTGACTATATGAAGGGGGATGGTACTGGATGCACGTCAATCTATGGTACCAAATTTGATGATGACAACTTCATTGCAAAGCATACTGGTCCTGGCCTACTTTCTATGGCAAATAGTGGGGTGAACTCTAATGGATCTCAGTTCTTTATAACTTGTGCAAAATGTGAATGGCTGGACACACAAGCATGTGGTTTTTGGGCAGGGTGCTAGGGGATGGTATGCTTGCTGTGCGGACGATCGCAGCACTGTTGCAACTGGACACAAACAACCGACCGAAGCTCGCATGTGTCATAAGCGAGTGTGGTGAGATGTCAGAAGTCCT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_10551#2 ------------------------------------------------------------
consensus_10551#3 ------------------------------------------------------------
consensus_10551#0 CGCCGCCTCCGCCGCGTGCGAAGCTTGGAGAGTTCGAGCACGGGCATGGCGTCCTCGGGG 60
consensus_10551#1 --------CCTCCGCCGCGTGCGAAGCTTGGAGAGTTCGAGCACGGGCATGGCGTCCTCG 52
consensus_10551#2 ------------------------------------------------------------
consensus_10551#3 ------------------------------------------------------------
consensus_10551#0 GGAGCGGCGATCTCGGCGGGGCCCACGCCGCCGTCGGCGGCGGCGGCGTCGTCGTCGGTG 120
consensus_10551#1 GGGGGAGCGGCGATCTCGGCGGGGCCCACGCCGCCGTCGGCGGCGGCGGCGTCGTCGGTG 112
consensus_10551#2 ------------------------------------------------------------
consensus_10551#3 ------------------------------------------------------------
consensus_10551#0 GACTGGCACCTGCGGCCGCCGAACCCGAAGAACCCGGTGGTGTTCTTCGACGTGACCATC 180
consensus_10551#1 GACTGGCACCTGCGGCCGCCGAACCCGAAGAACCCGGTGGTGTTCTTCGACGTGACCATC 172
consensus_10551#2 ------------------------------------------------------------
consensus_10551#3 ------------------------------------------------------------
consensus_10551#0 GGGTCCATCCCCGCCGGCCGCATCAAGATGGAGCTCTTCGCCGACATCGTCCCCAAGACG 240
consensus_10551#1 GGGTCCATCCCCGCCGGCCGCATCAAGATGGAGCTCTTCGCCGACATCGTCCCCAAGACG 232
consensus_10551#2 -------------------------------------------GATGGTTACCATTCTGA 17
consensus_10551#3 ----------------------------------------------------------CA 2
consensus_10551#0 GCGGAGAACTTCCGGCAGTTCTGCACTGGAGAGCACAGGAAATCAGGTTTACCACAGGGA 300
consensus_10551#1 GCGGAGAACTTCCGGCAGTTCTGCACCGGAGAGCACAGGAAATCGGGTTTACCACAGGGA 292
*
consensus_10551#2 TGTGGGAGCGG------CCATCGAGTGATCAAAG-ATTTCATGATTCAGGGAGGTGACTA 70
consensus_10551#3 TGTGGGAGCGG------CCATCGAGTGATCCAAGCATTTCATGATTCAAG-AGGTGACTA 55
consensus_10551#0 TATAAGGGTTGTCAGTTCCATCGAGTGATCAAAG-ATTTCATGATTCAGGGAGGTGACTA 359
consensus_10551#1 TATAAGGGTTGTCAGTTCCATCGAGTGATCAAAG-ATTTCATGATTCAGGGAGGTGACTA 351
* * * * * ************* *** ************* * *********
consensus_10551#2 TATGAAGGGGGATGGTACTGGATGCACGTCAATCTATGGTACCAAATTTGATGATGAAAA 130
consensus_10551#3 TATGAAGGGGGATGGTACTGGATGCACGTCAATCTATGGTACCAAATTTGATGATGACAA 115
consensus_10551#0 TATGAAGGGGGATGGTACTGGATGCACGTCAATCTATGGTACCAAATTTGATGATGAAAA 419
consensus_10551#1 TATGAAGGGGGATGGTACTGGATGCACGTCAATCTATGGTACCTAATTTGATGATGAAAA 411
******************************************* ************* **
consensus_10551#2 CTTCATTGCAAAGCATACTGGTCCTGGCCTACTTTCTATGGCAAATAGTGGGGTGAACTC 190
consensus_10551#3 CTTCATTGCAAAGCATACTGGTCCTGGCCTACTTTCTATGGCAAATAGTGGGGTGAACTC 175
consensus_10551#0 CTTCATTGCAAAGCATACTGGTCCTGGCCTACTTTCTATGGCAAATAGTGGGGTGAACTC 479
consensus_10551#1 CTTCCTTGGCGAGCATACTGGTCCTGCCCTACTTTCTTTGGCCAATAGTGGGGTGACCTC 471
**** *** *************** ********** **** ************* ***
consensus_10551#2 TAATGGATC-TCAGTTCTTTATAACTTGT-GCAAAATGTGAATGGCTGGACA-ACAAGCA 247
consensus_10551#3 TAATGGATC-TCAGTTCTTTATAACTTGT-GCAAAATGTGAATGGCTGGACACACAAGCA 233
consensus_10551#0 TAATGGATC-TCAGTTCTTTATAACTTGT-GCAAAATGTGAATGGCTGGACA-ACAAGCA 536
consensus_10551#1 TAGTGGATCCTCCGTTCTTTATAACTTGTTGCAAATTGTGAATGGCTGGACCACAACGCT 531
** ****** ** **************** ***** *************** * **
consensus_10551#2 TGTGGTTTTTGGG-AGGGTGCTAGGGGATGGTATGCTTGCTGTGCGGAAGATCG--AGAA 304
consensus_10551#3 TGTGGTTTTTGGGCAGGGTGCTAGGGGATGGTATGCTTGCTGTGCGGACGATCGCAGCAC 293
consensus_10551#0 TGTGGTTTTTGGG-AGGGTGCTAGGGGATGGTATGCTTGCTGTGCGGAAGATCG--AGAA 593
consensus_10551#1 TGTTGGTTTTGGGAGGGTCCTTGGGGGATGGTATGCTTGCTGTCCCGCAGAATT-AAAAT 590
*** * ******* ** * ******************** * * ** *
consensus_10551#2 TGTTGCAACTGGAC-CAAACAACCGACCGAAGCTCGCATGTGTCATAAGCGAGTGTGGTG 363
consensus_10551#3 TGTTGCAACTGGACACAAACAACCGACCGAAGCTCGCATGTGTCATAAGCGAGTGTGGTG 353
consensus_10551#0 TGTTGCAACTGGAC-CAAACAACCGACCGAAGCTCGCATGTGTCATAAGCGAGTGTGGTG 652
consensus_10551#1 TGTTCANACTGGACCCAGCCAATCGACCACGCCCCGCT---------------------- 628
**** ******* ** *** ***** * ***
consensus_10551#2 AGATGTAGTTTGTACCTTGAGGGTGACTATTCTTGGTGCTGCTGATGTAGAAATAGACTT 423
consensus_10551#3 AGATGTCAGAAGTCCT-------------------------------------------- 369
consensus_10551#0 AGATGTAGTTTGTACCTTGAGGGTGACTATTCTTGGTGCTGCTGATGTAGAAATAGACTT 712
consensus_10551#1 ------------------------------------------------------------
consensus_10551#2 TGCATGGATGAAACTACTCCAGCATTGGAAGCACCATAAGACATAGCTGTACCAAAGTAT 483
consensus_10551#3 ------------------------------------------------------------
consensus_10551#0 TGCATGGATGAAACTACTCCAGCATTGGAAGCACCATAAGACATAGCTGTACCAAAGTAT 772
consensus_10551#1 ------------------------------------------------------------
consensus_10551#2 CAATTCACCTTGAATGAGTGTCTGTCTATACACTGATGAAAGTTCATCCTCACTTCGTCA 543
consensus_10551#3 ------------------------------------------------------------
consensus_10551#0 CAATTCACCTTGAATGAGTGTCTGTCTATACACTGATGAAAGTTCATCCTCACTTCGTCA 832
consensus_10551#1 ------------------------------------------------------------
consensus_10551#2 GTGACATCAGTTGTCACTTAAACTGTTGATTAATATTCTAAACAGGGAATATGTGTGTCT 603
consensus_10551#3 ------------------------------------------------------------
consensus_10551#0 GTGACATCAGTTGTCACTTAAACTGTTGATTAATATTCTAAACAGGGAATATGTGTGTCT 892
consensus_10551#1 ------------------------------------------------------------
consensus_10551#2 GTTCGACTTGAAAAA--------------------------------------------- 618
consensus_10551#3 ------------------------------------------------------------
consensus_10551#0 GTTCGACTTGAACCTTCGTCATGTCAAGTGGAGCTGGCATTATATTCAGCTGAACATGCT 952
consensus_10551#1 ------------------------------------------------------------
consensus_10551#2 --------------------------------------------------------
consensus_10551#3 --------------------------------------------------------
consensus_10551#0 TGATGAAATGATGAGTCGATCTGTGGTTGCACCCATTTTATAAAGTATACTAAACT 1008
consensus_10551#1 --------------------------------------------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||