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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_10553#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 6 consensus length = 1192 fasta sequence
[GCCTTGTCCTCCTCTTCGCACCTCCTCCCCTTCTCCCGGCCTCCCGCGACCTTCCCACGAGCACGCCACGCCGGCGGCGGGAGGGGCCGAGCCGGCGCCACGGGGAGGTTCATAGCGTGCTCCTCGCCCCCTCCTCCCGACGTCGTGGTCACCCGCGAGCGCGGGAAGAACGCCAAGCTCATCGCCGCGCTGGAAAAACATAATGTACAAAGTCTTGAGCTTCCTCTTATTAAACATGTTGAAGGGCCAGATACAGATAGGCTTTCTGCTGTCCTGCGCGATGAAAAGTTTGACTGGATCACTATAACATCTCCTGAGGCAGCTGCTGTGTTCCTTGAGGGATGGAAGGCTGCTGGAAATCCTAAGGTACGAATAGCGGTTGTTGGAGCAGGTACTGAAAGAGTTTTTGACGAAGTAATTCAATACAATGATGGATCCCTTGAGGTTGCATTTTCTCCTTCTAAAGCTATGGGTAAATTTTTGGCCTCAGAGCTTCCAAGGACCACTGAAACTACTTGTAAAGTGTTATATCCTGCATCTGCAAAGGCTGGCCATGAAATCCAGAATGGGCTATCAAATCGAGGATTTGAGGTGACAAGACTGAACACATATACAACTGTATCTGTACAGGATGTCGATCCGCTAATATTAAAGCCTGCTCTTTCAGCTCCAGTTGTTGCAGTAGCTTCTCCTTCTGCTCTCCGAGCTTGGCTAAATCTTGCTTCACAAGTTGACAACTGGGGCAACGCCATTGCCTGCATAGGCGAGACGACTGCCTCAGCAGCTAAGAAATTTGGCCTGAAGAGCATATATTATCCTACCA-CCCCGGGACTTGACGGGTGGGTTGAAAGCATCCTTGAAGCGCTCAGAGCCCATGGGCAATCGAAAGAGGCCCCAGGGTGTTGAACTTGAAGACGGGCAATTTACTTGTACCAGATGCTGGAGGTTGGTGGACATTTGTGGCGGCTGCATATTGAACTCTGTGCTTCCTTGACTAACCGATCACACACTTTTTGTTGTTTTTCTAATATAATTGAGAGGAGAAACCAAGTCGGCAACTACTGTAGTAGAACTACTTGTAAATTGTGAGCTGTTTATTGTAGCTACTGAACACGGTGCGGTATATTACCAGTGTTGTACCAATTGTTGCTTAGTTTATACCAGTTTGGCACAAAAAAAAAAAAAAAAAAAA]
[+] EMBL CF335501 [GCCTTGTCCTCCTCTTCGCACCTCCTCCCCTTCTCCCGGCCTCCCGCGACCTTCCCACGAGCACGCCACGCCGGCGGCGGGAGGGGCCGAGCCGGCGCCACGGGGAGGTTCATAGCGTGCTCCTCGCCCCCTCCTCCCGACGTCGTGGTCACCCGCGAGCGCGGGAAGAACGCCAAGCTCATCGCCGCGCTGGAAAAACATAATGTACAAAGTCTTGAGCTTCCTCTTATTAAACATGTTGAAGGGCCAGATACAGATAGGCTTTCTGCTGTCCTGCGCGATGAAAAGTTTGACTGGATCACTATAACATCTCCTGAGGCAGCTGCTGTGTTCCTTGAGGGATGGAAGGCTGCTGGAAATCCTAAGGTACGAATAGCGGTTGTTGGAGCAGGTACTGAAAGAGTTTTTGACGAAGTAATTCAATACAATGATGGATCCCTTGAGGTTGCATTTTCTCCTTCTAAAGCTATGGGTAAATTTTTGGCCTCAGAGCTTCCAAGGACCACTGAAACTACTTGTAAAGTGTTATATCCTGCATCTGCAAAGGCTG ]
[+] EMBL AK107127 [ TCCTCCTCTTCGCACCTCCTCCCCTTCTCCCGGCCTCCCGCGACCTTCCCACGAGCACGCCACGCCGGCGGCGGGAGGGGCCGAGCCGGCGCCACGGGGAGGTTCATAGCGTGCTCCTCGCCCCCTCCTCCCGACGTCGTGGTCACCCGCGAGCGCGGGAAGAACGCCAAGCTCATCGCCGCGCTGGAAAAACATAATGTACAAAGTCTTGAGCTTCCTCTTATTAAACATGTTGAAGGGCCAGATACAGATAGGCTTTCTGCTGTCCTGCGCGATGAAAAGTTTGACTGGATCACTATAACATCTCCTGAGGCAGCTGCTGTGTTCCTTGAGGGATGGAAGGCTGCTGGAAATCCTAAGGTACGAATAGCGGTTGTTGGAGCAGGTACTGAAAGAGTTTTTGACGAAGTAATTCAATACAATGATGGATCCCTTGAGGTTGCATTTTCTCCTTCTAAAGCTATGGGTAAATTTTTGGCCTCAGAGCTTCCAAGGACCACTGAAACTACTTGTAAAGTGTTATATCCTGCATCTGCAAAGGCTGGCCATGAAATCCAGAATGGGCTATCAAATCGAGGATTTGAGGTGACAAGACTGAACACATATACAACTGTATCTGTACAGGATGTCGATCCGCTAATATTAAAGCCTGCTCTTTCAGCTCCAGTTGTTGCAGTAGCTTCTCCTTCTGCTCTCCGAGCTTGGCTAAATCTTGCTTCACAAGTTGACAACTGGGGCAACGCCATTGCCTGCATAGGCGAGACGACTGCCTCAGCAGCTAAGAAATTTGGCCTGAAGAGCATATATTATCCTACCA CCCCGGGACTTGACGGGTGGGTTGAAAGCATCCTTGAAGCGCTCAGAGCCCATGGGCAATCGAAAGAGGCCCCAGGGTGTTGAACTTGAAGACGGGCAATTTACTTGTACCAGATGCTGGAGGTTGGTGGACATTTGTGGCGGCTGCATATTGAACTCTGTGCTTCCTTGACTAACCGATCACACACTTTTTGTTGTTTTTCTAATATAATTGAGAGGAGAAACCAAGTCGGCAACTACTGTAGTAGAACTACTTGTAAATTGTGAGCTGTTTATTGTAGCTACTGAACACGGTGCGGTATATTACCAGTGTTGTACCAATTGT ]
[-] EMBL CB654882 [ TTTTGACGAAGTAATTCAATACAATGATGGATCCCTTGAGGTTGCATTTTCTCCTTCTAAAGCTATGGGTAAATTTTTGGCCTCAGAGCTTCCAAGGACCACTGAAACTACTTGTAAAGTGTTATATCCTGCATCTGCAAAGGCTGGCCATGAAATCCAGAATGGGCTATCAAATCGAGGATTTGAGGTGACAAGACTGAACACATATACAACTGTATCTGTACAGGATGTCGATCCGCTAATATTAAAGCCTGCTCTTTCAGCTCCAGTTGTTGCAGTAGCTTCTCCTTCTGCTCTCCGAGCTTGGCTAAATCTTGCTTCACAAGTTGACAACTGGGGCAACGCCATTGCCTGCATAGGCGAGACGACTGCCTCAGCAGCTAAGAAATTTGGCCTGAAGAGCATATATTATCCTACCA CCCCGGGACTTGACGGGTGGGTTGAAAGCATCCTTGAAGCGCTCAGAGCCCATGGGCAATCGAAAGAGGCCCCAGGGTGTTGAACTTGAAGACGGGCAATTTACTTGTACCAGATGCTGGAGGTTGGTGGACATTTGTGGCGGCTGCATATTGAACTCTGTGCTTCCTTGACTAACCGATCACACACTTTTTGTTGTTTTTCTAATATAATTGAGAGGAGAAACCAAGTCGGCAACTACTGTAGTAGAACTACTTGTAAATTGTGAGCTGTTTATTGTAGCTACTGAACACGGTGCGGTATATTACCAGTGTTGTACCAAAGGTTGCTTAGTTTATACCAGTTTGGCcc ]
[+] EMBL CA765978 [ TTTTGGCCTCAGAGCTTCCAAGGACCACTGAAACTACTTGTAAAGTGTTATATCCTGCATCTGCAAAGGCTGGCCATGAAATCCAGAATGGGCTATCAAATCGAGGATTTGAGGTGACAAGACTGAACACATATACAACTGTACCTGTACAGGATGTCGATCCGCTAATATTAAAGCCTGCTCTTTCAGCTCCAGTTGTTGCAGTAGCTTCTCCTTCTGCTCTCCGAGCTTGGCTAAATCTTGCTTCACAAGTTGACAACTGGGGCAACGCCATTGCCTGCATAGGCGAGACGACTGCCTCAGCAGCTAAGAAATTTGGCCTGAAGAGCATATATTATCCTACCA CCCCGGGACTTGACGGGTGGGTTGAAAGCATCCTTGAAGCGCTCAGAGCCCATGGGCAATCGAAAGAAGCCCCAGGGTGTTGAACTTGAAGACGGGCAATTTACTTGTACCAGATGCTGGAGGTTGGTGGACATTTGTGGCGGCTGCATATTGAACTCTGTGCTTCCTTGACTAACCGATCACACACTTTTTGTTGTTTTTCTAATATAATTGAGAGGAGAAACCAAGTCGGCAACTACTGTAGTAGAACTACTTGTAAATTGTGAGCTGNTTATTGTAGCTACTGAACACGGTGCGGTATATTACCAGTGTTGTACCAATTGTTGCTT ]
[-] EMBL CF335502 [ TCACAAGTTGACAACTGGGGCAACGCCATTGCCTGCATAGGCGAGACGACTGCCTCAGCAGCTAAGAAATTTGGCCTGAAGAGCATATATTATCCTACCACCCCCGGGACTTGACGGGTGGGTTGAAAGCATCCTTGAAGCGCCCAGAGCCCATGGGCAATCGAAAGAGGCCCCAGGGTGTTGAACTTGAAGACGGGCAATTTACTTGTACCAGATGCTGGAGGTTGGTGGACATTTGTGGCGGCTGCATATTGAACTCTGTGCTTCCTTGACTAACCGATCACACACTTTTTGTTGTTTTTCTAATATAATTGAGAGGAGAAACCAAGTCGGCAACTACTGTAGTAGAACTACTTGTAAATTGTGAGCTGTTTATTGTAGCTACTGAACACGGTGCGGTATATTACCAGTGTTGTACCAATTGTTGCTTAGTTTATACCAGTTTGGCACAAAAAAAA ]
[+] EMBL CF328227 [ TTGTAAATTGTGAGCTGTTTATTGTAGCTACTGAACACGGTGCGGTAAATTACCAGTGTTGTACCAATTGTTGCTTAGTTTATACCAGTTTGGCACANAAAAAAAAAAAAAAAAAA]
consensusID : consensus_10553#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 145 fasta sequence
[ATGGATTGAAGGAGTAGAAAAGAACTACTTGTAAATTGTGAGCTGTTTATTGTAGCTACTGAACCCGGTGCGGTAAATTACCAGTGTTGTACCAATTGTTGTTTAGTTTATCCCAGTTGGGCCCAAAAAAAAAAAAAAAAAAAAA]
[-] EMBL CF328226 [ATGGATTGAAGGAGTAGAAAAGAACTACTTGTAAATTGTGAGCTGTTTATTGTAGCTACTGAACCCGGTGCGGTAAATTACCAGTGTTGTACCAATTGTTGTTTAGTTTATCCCAGTTGGGCCCAAAAAAAAAAAAAAAAAAAAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_10553#0 GCCTTGTCCTCCTCTTCGCACCTCCTCCCCTTCTCCCGGCCTCCCGCGACCTTCCCACGA 60
consensus_10553#1 ------------------------------------------------------------
consensus_10553#0 GCACGCCACGCCGGCGGCGGGAGGGGCCGAGCCGGCGCCACGGGGAGGTTCATAGCGTGC 120
consensus_10553#1 ------------------------------------------------------------
consensus_10553#0 TCCTCGCCCCCTCCTCCCGACGTCGTGGTCACCCGCGAGCGCGGGAAGAACGCCAAGCTC 180
consensus_10553#1 ------------------------------------------------------------
consensus_10553#0 ATCGCCGCGCTGGAAAAACATAATGTACAAAGTCTTGAGCTTCCTCTTATTAAACATGTT 240
consensus_10553#1 ------------------------------------------------------------
consensus_10553#0 GAAGGGCCAGATACAGATAGGCTTTCTGCTGTCCTGCGCGATGAAAAGTTTGACTGGATC 300
consensus_10553#1 ------------------------------------------------------------
consensus_10553#0 ACTATAACATCTCCTGAGGCAGCTGCTGTGTTCCTTGAGGGATGGAAGGCTGCTGGAAAT 360
consensus_10553#1 ------------------------------------------------------------
consensus_10553#0 CCTAAGGTACGAATAGCGGTTGTTGGAGCAGGTACTGAAAGAGTTTTTGACGAAGTAATT 420
consensus_10553#1 ------------------------------------------------------------
consensus_10553#0 CAATACAATGATGGATCCCTTGAGGTTGCATTTTCTCCTTCTAAAGCTATGGGTAAATTT 480
consensus_10553#1 ------------------------------------------------------------
consensus_10553#0 TTGGCCTCAGAGCTTCCAAGGACCACTGAAACTACTTGTAAAGTGTTATATCCTGCATCT 540
consensus_10553#1 ------------------------------------------------------------
consensus_10553#0 GCAAAGGCTGGCCATGAAATCCAGAATGGGCTATCAAATCGAGGATTTGAGGTGACAAGA 600
consensus_10553#1 ------------------------------------------------------------
consensus_10553#0 CTGAACACATATACAACTGTATCTGTACAGGATGTCGATCCGCTAATATTAAAGCCTGCT 660
consensus_10553#1 ------------------------------------------------------------
consensus_10553#0 CTTTCAGCTCCAGTTGTTGCAGTAGCTTCTCCTTCTGCTCTCCGAGCTTGGCTAAATCTT 720
consensus_10553#1 ------------------------------------------------------------
consensus_10553#0 GCTTCACAAGTTGACAACTGGGGCAACGCCATTGCCTGCATAGGCGAGACGACTGCCTCA 780
consensus_10553#1 ------------------------------------------------------------
consensus_10553#0 GCAGCTAAGAAATTTGGCCTGAAGAGCATATATTATCCTACCACCCCGGGACTTGACGGG 840
consensus_10553#1 ------------------------------------------------------------
consensus_10553#0 TGGGTTGAAAGCATCCTTGAAGCGCTCAGAGCCCATGGGCAATCGAAAGAGGCCCCAGGG 900
consensus_10553#1 ------------------------------------------------------------
consensus_10553#0 TGTTGAACTTGAAGACGGGCAATTTACTTGTACCAGATGCTGGAGGTTGGTGGACATTTG 960
consensus_10553#1 ------------------------------------------------------------
consensus_10553#0 TGGCGGCTGCATATTGAACTCTGTGCTTCCTTGACTAACCGATCACACACTTTTTGTTGT 1020
consensus_10553#1 ------------------------------------------------------------
consensus_10553#0 TTTTCTAATATAATTGAGAGGAGAAACCAAGTCGGCAACTACTGTAGTAGAACTACTTGT 1080
consensus_10553#1 --------------------------ATGGATTG--AAGGAGTAGAAAAGAACTACTTGT 32
* * ** * * * ************
consensus_10553#0 AAATTGTGAGCTGTTTATTGTAGCTACTGAACACGGTGCGGTATATTACCAGTGTTGTAC 1140
consensus_10553#1 AAATTGTGAGCTGTTTATTGTAGCTACTGAACCCGGTGCGGTAAATTACCAGTGTTGTAC 92
******************************** ********** ****************
consensus_10553#0 CAATTGTTGCTTAGTTTATACCAGTTTGGCACAAAAAAAAAAAAAAAAAAAA- 1192
consensus_10553#1 CAATTGTTGTTTAGTTTATCCCAGTTGGGCCCAAAAAAAAAAAAAAAAAAAAA 145
********* ********* ****** *** *********************
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||