These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_1057#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 259 fasta sequence [AAGTCGCGTCGCACCGAAGCAGAGTAGAGAAGGAGAGGAGCGGAGGGCAGTCAGCCGTCCGATCGAGTGATCCGATGGCTCTCGCTCTCTCCACCTCTGCTGCTGCTGCCGCTGACGCCGCGGCGCGTGCGCTCGCGGCGAGGGTGACGACGACGAGGGGTTACGNCGCGTCGAGNTACTGTTCGNCGATGAGGCGTTCGGCGTNGNNGGTGGAAGNGAAGTTCGNTGCGTGGATGACGTAGTNGAAGGACGGGNTCNT] [+] EMBL OSC16651 [AAGTCGCGTCGCACCGAAGCAGAGTAGAGAAGGAGAGGAGCGGAGGGCAGTCAGCCGTCCGATCGAGTGATCCGATGGCTCTCGCTCTCTCCACCTCTGCTGCTGCTGCCGCTGACGCCGCGGCGCGTGCGCTCGCGGCGAGGGTGACGACGACGAGGGGTTACGNCGCGTCGAGNTACTGTTCGNCGATGAGGCGTTCGGCGTNGNNGGTGGAAGNGAAGTTCGNTGCGTGGATGACGTAGTNGAAGGACGGGNTCNT] consensusID : consensus_1057#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 252 fasta sequence [GTCGCGTCGCACCGAAGCAGAGTAGAGAAGGAGAGGAGCGGAGGNCAGTCAGCCGTCCGATCGAGTGATCCGATGGCTCTCGCTCTCTCCACCTCTGCTGCTGCTGCCGCTGACGACGCGCGCGTGCGCTCGCGGCGAGGGTGACGACGACGAGGGGTTACGACGCGTCGGGNTNCGGTCGGCGATGAGGCGTGCGGCGGCGACGGTGGAAGGGAAGTGCGCTGCGTGGATGACGAAGNCGAAGGACGTGTC] [+] EMBL OSC16581 [GTCGCGTCGCACCGAAGCAGAGTAGAGAAGGAGAGGAGCGGAGGNCAGTCAGCCGTCCGATCGAGTGATCCGATGGCTCTCGCTCTCTCCACCTCTGCTGCTGCTGCCGCTGACGACGCGCGCGTGCGCTCGCGGCGAGGGTGACGACGACGAGGGGTTACGACGCGTCGGGNTNCGGTCGGCGATGAGGCGTGCGGCGGCGACGGTGGAAGGGAAGTGCGCTGCGTGGATGACGAAGNCGAAGGACGTGTC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_1057#0 AAGTCGCGTCGCACCGAAGCAGAGTAGAGAAGGAGAGGAGCGGAGGGCAGTCAGCCGTCC 60 consensus_1057#1 --GTCGCGTCGCACCGAAGCAGAGTAGAGAAGGAGAGGAGCGGAGGNCAGTCAGCCGTCC 58 ******************************************** ************* consensus_1057#0 GATCGAGTGATCCGATGGCTCTCGCTCTCTCCACCTCTGCTGCTGCTGCCGCTGACGCCG 120 consensus_1057#1 GATCGAGTGATCCGATGGCTCTCGCTCTCTCCACCTCTGCTGCTGCTGCCGCTGACGACG 118 ********************************************************* ** consensus_1057#0 CGGCGCGTGCGCTCGCGGCGAGGGTGACGACGACGAGGGGTTACGNCGCGTCGAGNTACT 180 consensus_1057#1 CG-CGCGTGCGCTCGCGGCGAGGGTGACGACGACGAGGGGTTACGACGCGTCGGGNTNCG 177 ** ****************************************** ******* *** * consensus_1057#0 GTTCGNCGATGAGGCGTTCGGCGTNGNNGGTGGAAGNGAAGTTCGNTGCGTGGATGACGT 240 consensus_1057#1 GT-CGGCGATGAGGCGTGCGGCGGCGACGGTGGAAGGGAAGTGCGCTGCGTGGATGACGA 236 ** ** *********** ***** * ******** ***** ** ************* consensus_1057#0 AGTNGAAGGACGGGNTCNT 259 consensus_1057#1 AGNCGAAGGACGTGTC--- 252 ** ******** * |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||