cluster # 1058

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Oryza sativa
cluster # 1058 cluster # 1058 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_1058#0 length = 615 sequences # 1

consensus_1058#1 length = 597 sequences # 1

consensusID : consensus_1058#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 615
fasta sequence

                              [ATTTCAGCTTAGCAACTAACATGGGTCAACAACAAAGTACCGAATCAGCATTCAGCCTTCCTTATGAAACAGCAATCACACCAGCTATTGGCTATGGTACTCAAGTTCATGTCTATGGTACAGCCACTGGCGATCGATTCGAAATCAATTTGGCCAACAACCGTGGTGATATCTTTTTACACGTTAATCCACGTGTCCGTGACCGTCAATTGGTCTTGAACTCTGCACCTGCTGGTAACTGGGGTGGTGAAGAACGTAAACCATTAAACTTACAACTGGTGGATCCNATTCAAGCTCCTCATCATGGTCACTGAACAAGCCTTCAAAATTGCCATTAACAACGAACATGTTGCTGATTACAACCATCGATTACCACTCAATCTTGCTGAATTAGTTACAGTTAAAGGTGAGTGGTAATCGATGGGTGTAATCAGCATCATGGGCACTGCACNNNCNGCCTGGGCGCCATCTGCNNCGCGGAGGGTCGCAAGCGGGTCCAGAGCTCGTAAGAGCGGCGGTACGGGGGGGGAACCCAACGGCTGCACGGACAGCTAATCCCAGGGCACCGGCCTCGGGCGTGTAGAACATCCGGCCCTTCGTGCTCGNCATAAACCG]

[+] EMBL CA754718             [ATTTCAGCTTAGCAACTAACATGGGTCAACAACAAAGTACCGAATCAGCATTCAGCCTTCCTTATGAAACAGCAATCACACCAGCTATTGGCTATGGTACTCAAGTTCATGTCTATGGTACAGCCACTGGCGATCGATTCGAAATCAATTTGGCCAACAACCGTGGTGATATCTTTTTACACGTTAATCCACGTGTCCGTGACCGTCAATTGGTCTTGAACTCTGCACCTGCTGGTAACTGGGGTGGTGAAGAACGTAAACCATTAAACTTACAACTGGTGGATCCNATTCAAGCTCCTCATCATGGTCACTGAACAAGCCTTCAAAATTGCCATTAACAACGAACATGTTGCTGATTACAACCATCGATTACCACTCAATCTTGCTGAATTAGTTACAGTTAAAGGTGAGTGGTAATCGATGGGTGTAATCAGCATCATGGGCACTGCACNNNCNGCCTGGGCGCCATCTGCNNCGCGGAGGGTCGCAAGCGGGTCCAGAGCTCGTAAGAGCGGCGGTACGGGGGGGGAACCCAACGGCTGCACGGACAGCTAATCCCAGGGCACCGGCCTCGGGCGTGTAGAACATCCGGCCCTTCGTGCTCGNCATAAACCG]




>consensus_1058#0
ATTTCAGCTTAGCAACTAACATGGGTCAACAACAAAGTACCGAATCAGCATTCAGCCTTC
CTTATGAAACAGCAATCACACCAGCTATTGGCTATGGTACTCAAGTTCATGTCTATGGTA
CAGCCACTGGCGATCGATTCGAAATCAATTTGGCCAACAACCGTGGTGATATCTTTTTAC
ACGTTAATCCACGTGTCCGTGACCGTCAATTGGTCTTGAACTCTGCACCTGCTGGTAACT
GGGGTGGTGAAGAACGTAAACCATTAAACTTACAACTGGTGGATCCNATTCAAGCTCCTC
ATCATGGTCACTGAACAAGCCTTCAAAATTGCCATTAACAACGAACATGTTGCTGATTAC
AACCATCGATTACCACTCAATCTTGCTGAATTAGTTACAGTTAAAGGTGAGTGGTAATCG
ATGGGTGTAATCAGCATCATGGGCACTGCACNNNCNGCCTGGGCGCCATCTGCNNCGCGG
AGGGTCGCAAGCGGGTCCAGAGCTCGTAAGAGCGGCGGTACGGGGGGGGAACCCAACGGC
TGCACGGACAGCTAATCCCAGGGCACCGGCCTCGGGCGTGTAGAACATCCGGCCCTTCGT
GCTCGNCATAAACCG

consensusID : consensus_1058#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 597
fasta sequence

                              [TTCAGCTTAGCAACTAACATGGGTCAACAACAAAGTACCGAATCAGCATTCAGCCTTCCTTATGAAACAGCAATCACACCAGCTATTGGCTATGGTACTCAAGTTCATGTCTATGGTACAGCCACTGGCGATCGATTCGAAATCAATTTGGCCAACAACCGTGGTGATATCGTTTTACACGTTAATCCACGTGTCCGTGACCGTCAATTGGTCTTGAACTCTGCACCTGCTGGTAACTGGGGTGGTGAAGAACGTAAACCATTAAACTTTACAACTGGTGATCAATTCAAACTCCTCATCATGGTCACTGAACAAGCCTTCAAAATTGCCATTAACAACGAACATGTTGCTGATTACAACCATCGATTACCACTCAATCTTGCTGAATTAGTTACAGTTAAAGGTGACTTTGAATTAACCAACCTCGTCGTCTATCCAGGTTTCGTTCCATACGGTCAACCATGGACTTTCGAAAAAGAAACACCACTACCAATCAACGTCTTTCCTGGTCGTGTCATTTACATTGATGGTCGTGCTGATGACAATGCATCACGATTTGAATTCAATTTATTAACTGATACATACNATGGAGCTGAT]

[+] EMBL CA758861             [TTCAGCTTAGCAACTAACATGGGTCAACAACAAAGTACCGAATCAGCATTCAGCCTTCCTTATGAAACAGCAATCACACCAGCTATTGGCTATGGTACTCAAGTTCATGTCTATGGTACAGCCACTGGCGATCGATTCGAAATCAATTTGGCCAACAACCGTGGTGATATCGTTTTACACGTTAATCCACGTGTCCGTGACCGTCAATTGGTCTTGAACTCTGCACCTGCTGGTAACTGGGGTGGTGAAGAACGTAAACCATTAAACTTTACAACTGGTGATCAATTCAAACTCCTCATCATGGTCACTGAACAAGCCTTCAAAATTGCCATTAACAACGAACATGTTGCTGATTACAACCATCGATTACCACTCAATCTTGCTGAATTAGTTACAGTTAAAGGTGACTTTGAATTAACCAACCTCGTCGTCTATCCAGGTTTCGTTCCATACGGTCAACCATGGACTTTCGAAAAAGAAACACCACTACCAATCAACGTCTTTCCTGGTCGTGTCATTTACATTGATGGTCGTGCTGATGACAATGCATCACGATTTGAATTCAATTTATTAACTGATACATACNATGGAGCTGAT]




>consensus_1058#1
TTCAGCTTAGCAACTAACATGGGTCAACAACAAAGTACCGAATCAGCATTCAGCCTTCCT
TATGAAACAGCAATCACACCAGCTATTGGCTATGGTACTCAAGTTCATGTCTATGGTACA
GCCACTGGCGATCGATTCGAAATCAATTTGGCCAACAACCGTGGTGATATCGTTTTACAC
GTTAATCCACGTGTCCGTGACCGTCAATTGGTCTTGAACTCTGCACCTGCTGGTAACTGG
GGTGGTGAAGAACGTAAACCATTAAACTTTACAACTGGTGATCAATTCAAACTCCTCATC
ATGGTCACTGAACAAGCCTTCAAAATTGCCATTAACAACGAACATGTTGCTGATTACAAC
CATCGATTACCACTCAATCTTGCTGAATTAGTTACAGTTAAAGGTGACTTTGAATTAACC
AACCTCGTCGTCTATCCAGGTTTCGTTCCATACGGTCAACCATGGACTTTCGAAAAAGAA
ACACCACTACCAATCAACGTCTTTCCTGGTCGTGTCATTTACATTGATGGTCGTGCTGAT
GACAATGCATCACGATTTGAATTCAATTTATTAACTGATACATACNATGGAGCTGAT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_1058#0      ATTTCAGCTTAGCAACTAACATGGGTCAACAACAAAGTACCGAATCAGCATTCAGCCTTC 60
consensus_1058#1      --TTCAGCTTAGCAACTAACATGGGTCAACAACAAAGTACCGAATCAGCATTCAGCCTTC 58
                        **********************************************************

consensus_1058#0      CTTATGAAACAGCAATCACACCAGCTATTGGCTATGGTACTCAAGTTCATGTCTATGGTA 120
consensus_1058#1      CTTATGAAACAGCAATCACACCAGCTATTGGCTATGGTACTCAAGTTCATGTCTATGGTA 118
                      ************************************************************

consensus_1058#0      CAGCCACTGGCGATCGATTCGAAATCAATTTGGCCAACAACCGTGGTGATATCTTTTTAC 180
consensus_1058#1      CAGCCACTGGCGATCGATTCGAAATCAATTTGGCCAACAACCGTGGTGATATCGTTTTAC 178
                      ***************************************************** ******

consensus_1058#0      ACGTTAATCCACGTGTCCGTGACCGTCAATTGGTCTTGAACTCTGCACCTGCTGGTAACT 240
consensus_1058#1      ACGTTAATCCACGTGTCCGTGACCGTCAATTGGTCTTGAACTCTGCACCTGCTGGTAACT 238
                      ************************************************************

consensus_1058#0      GGGGTGGTGAAGAACGTAAACCATTAAACTT-ACAACTGGTGGATCCNATTCAAGCTCCT 299
consensus_1058#1      GGGGTGGTGAAGAACGTAAACCATTAAACTTTACAACTGGTGA--TCAATTCAAACTCCT 296
                      ******************************* **********    * ****** *****

consensus_1058#0      CATCATGGTCACTGAACAAGCCTTCAAAATTGCCATTAACAACGAACATGTTGCTGATTA 359
consensus_1058#1      CATCATGGTCACTGAACAAGCCTTCAAAATTGCCATTAACAACGAACATGTTGCTGATTA 356
                      ************************************************************

consensus_1058#0      CAACCATCGATTACCACTCAATCTTGCTGAATTAGTTACAGTTAAAGGTGAGTGGTAATC 419
consensus_1058#1      CAACCATCGATTACCACTCAATCTTGCTGAATTAGTTACAGTTAAAGGTGACTTTGAAT- 415
                      *************************************************** *   *** 

consensus_1058#0      GATGGGTGTAATCAGCATCATGGGCACTGCACNNNCNGCCTGGGCGCCATCTGCNNCGCG 479
consensus_1058#1      --------TAACCAACCTCGTCGTCTATCCAGGTTTCGTTCCA-TACGGTCAACCATG-- 464
                              *** ** * ** * * *  * **      *        *  **  *   *  

consensus_1058#0      GAGGGTCGCAAGCGGGTCCAGAGCTCGTAAGAGCGGCGGTACGGGGGGGGAACCCAACGG 539
consensus_1058#1      GACTTTCGAAAAAGAAACACCACTACCAATCAACGTCTTTCCTGGTCGTGT------CAT 518
                      **   *** **  *   *   *   *  *  * ** *  * * **  * *       *  

consensus_1058#0      CTGCACGGACAGCTAATCCCAGGGCACCGGCCTCGGGCGTGTAGAACATCCGGCCCTTCG 599
consensus_1058#1      TTACATTGATGGTCGTGCTGATGACAATGCATCACGATTTGAATTCAATTTATTAACTGA 578
                       * **  **  *     *  * * **  *      *   ** *    **        *  

consensus_1058#0      TGCTCGNCATAAACCG--- 615
consensus_1058#1      TACATACNATGGAGCTGAT 597
                      * *     **  * *