These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_10595#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 699 fasta sequence [TGCTGGCATTTGGAAACTTATGGGGCAGAAGAGCCCTTTGCACAATGGCGTCGACAAGTGCTGAGTGCATGGGCAAACCTGACGATACCTCCAGTGGCGCTATCACAACTTGATTGGCAACTCTGGTATAAATTGATTTGGGCCCTTTCTTGGGTACTACATTTTCCCACTGCCTTGCCATGTGAACTCTCGGTGACGACATGAGCGGTTCTGTTCATCTTCCAACGTAATCAGTCGAATTGCCCTTTTTCCCTACTATCAGAGTTCATGAATCCATGGAACGGCTGAATTGACCAGGA-TTGAACAG--AA-CGTGC-TAGTGGTGATGG-CATTTGACA-AGGAAGTAGTATTGCATATCTTTTTCTGAGCA-AGATTTTTATTAGCTAGTTACCCATCTGCTTCTCATGATCTTTAGCACCCAAA-GGGCACTCATGATTACAATTTCAGTTGACA-AAGAACATGGCGTGCCAACGTATTTGATTAGCATATTATTACAATTTCATACCAGGTATAAAGTAACTACACTTTCCTGCATATGCCATGTTCTTTGTCAAATACCTGGTGCTTGCCTGTTATACGTTTTAGCACTATGTATACTAGTAATATGCCCGTGCTAAACGCTACGGTGCATTCCCTTGTCTTTAATAACTTTTAAAATTTCATGTTGGGAAAAAAATTTATATGATATGTTCAAAAAAAAAA] [+] EMBL BQ908943 [TGCTGGCATTTGGAAACTTATGGGGCAGAAGAGCCCTTTGCACAATGGCGTCGACAAGTGCTGAGTGCATGGGCAAACCTGACGATACCTCCAGTGGCGCTATCACAACTTGATTGGCAACTCTGGTATAAATTGATTTGGGCCCTTTCTTGGGTACTACATTTTCCCACTGCCTTGCCATGTGAACTCTCGGTGACGACATGAGCGGTTCTGTTCATCTTCCAACGTAATCAGTCGAATTGCCCTTTTTCCCTACTATCAGAGTTCATGAATCCATGGAACGGCTGAATTGACCAGGA TTGAACAG AA CGTGC TAGTGGTGATGG CATTTGACA AGGAAGTAGTATTGCATATCTTTTTCTGAGCN AGATTTTTATTAGCTAGTTACCaaaaaa ] [+] EMBL OSS15506A [ AGAGCCCTTTGCACAATGGCGTCGACAAGTGCTGAGTGCATGGGCAAACCTGACGATACCTCCAGTGGCGCTATCACAACTTGATTGGCAACTCTGGTATAAATTGATTTGGGCCCTTTCTTGGGTACTACATTTTCCCACTGCCTTGCCATGTAAACTCTCGGTGACGACATGAGCGGTTCTGTTCATCTTCCAACGTAATCAGTCGAATTGCCCTTTTTCCCTACTATCAGAGTTCATGAATCCATGGAACGGCTGAATTGA CAGGA TTGAACAG AA CGTGC TAGTGGTGATGG CATTTGACA AGGAAGTAGTATTGCATATCTTTTTCTGAGCA AGATTTTTATTAGCTAGTTACCCATCTGCTTCTCATGATCTTTAGCACCCAAA GGGCACTCATGGTTACAATTTCAGTTGACA AAGGACATGGCGTGCCAA GTATTTGATTAGCATATTATTACAATTTCATACC ] [+] EMBL BI809140 [ atttgGACAGGGATTTGCACCGGAAACCGTGCTTAGTGGTGATGGCCATTTGACACAGGAAGTAGTATTGCATATCTTTTTCTGAGCACAGATTTTTATTAGCTAGTTACCCATCTGCTTCTCATGATCTTTA CACCCAAAGGGGCACTCATGATTACAATTTCAGTTGACACAAGAACATGGCGT CCAACGTATTTGATTAGCATATTATTACCATTTCATACCAGGTATAAAGTAACTACACTTTCCTGCATATGCCATGTTCTTTGTCAAATACCTGGTGCTTGCCTGTTATACGTTTTAGCACTATGTATACTAGTAATATGCCCGTGCTAAACGCTACGGTGCATTCCCTTGTCTTTAATAACTTTTAAAATTTCATGTTGGGAAAAAAATTTATATGATATGTTCAAAAAAAAAA] [+] EMBL AU101817 [ AGGA TTGAACAG AA CGTGC TAGTGGTGATGG CATTTGACA AGGAAGTAGTATTGCATATCTTTTTCTGAGCA AGATTTTTATTAGCTAGTTACCCATCTGCTTCTCATGATCTTTAGCACCCAAA GGGCACTCATGATTACAATTTCAGTTGACA AAGAACATGGCGTGCCAACGTATTTGATTAGCATATTATTACAATTTCATACCAGGTATAAAGTAACTACACTTTCCTGCAaaa ] consensusID : consensus_10595#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 619 fasta sequence [TTAACCCAAACATAATTCGACAGTAGTACATAACATGATTCCAAAACCAAAAGTAGGGCATCACAATCTTCAGCGAACAAGCCTTTGCCGACCACGGTAACAATTCCTCCATAACAAGGGTTGCGAAGGTAACCAGGATCAGACAAACAATCCCTCAGTTCTCCAGCAAGGCGGCAAGCACTACCGCTCTGGACGTCTGATCCTTGCTCGGACCAAAATCGGCAATGCTGGCATTTGGAAACTTATGGGGCAGAAGAGCCCTTTGCACAATGGCGTCGACAAGTGCTGAGTGCATGGGCAAACCTGACGATACCTCCAGTGGCGCTATCACAACTTGATTGGCAACTCTGGTATAAATTGATTTGGGCCCTTTCTTGGGTACTACATTTTCCCACTGCCTTGCCATGTAAACTCTCGGTGACGACATGAGCGGTTCTGTTCATCTTCCAACGTAATCAGTCGAATTGCCCTTTTTCCCTACTATCAGAGTTCATGAATCCATGGAACGGCTGAATTGACAGGATTGAACAGAACGTGCTAGTGGTGATGGCATTTGACANGGANNANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN] [+] EMBL CA756578 [TTAACCCAAACATAATTCGACAGTAGTACATAACATGATTCCAAAACCAAAAGTAGGGCATCACAATCTTCAGCGAACAAGCCTTTGCCGACCACGGTAACAATTCCTCCATAACAAGGGTTGCGAAGGTAACCAGGATCAGACAAACAATCCCTCAGTTCTCCAGCAAGGCGGCAAGCACTACCGCTCTGGACGTCTGATCCTTGCTCGGACCAAAATCGGCAATGCTGGCATTTGGAAACTTATGGGGCAGAAGAGCCCTTTGCACAATGGCGTCGACAAGTGCTGAGTGCATGGGCAAACCTGACGATACCTCCAGTGGCGCTATCACAACTTGATTGGCAACTCTGGTATAAATTGATTTGGGCCCTTTCTTGGGTACTACATTTTCCCACTGCCTTGCCATGTAAACTCTCGGTGACGACATGAGCGGTTCTGTTCATCTTCCAACGTAATCAGTCGAATTGCCCTTTTTCCCTACTATCAGAGTTCATGAATCCATGGAACGGCTGAATTGACAGGATTGAACAGAACGTGCTAGTGGTGATGGCATTTGACANGGANNANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN] consensusID : consensus_10595#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 479 fasta sequence [TGGCGTCGACAAGTGCTGAGTGCATGGGCAAACCTGACGATACCTCCAGTGGCGCTATCACAACTTGATTGGCAACTCTGGTATAAATTGATTTGGGCCCTTTCTTGGGTACTACATTTTCCCACTGCCTTGCCATGTGAACTCTCGGTGACGACATGAGCGGTTCTGTTCATCTTCCAACGTAATCAGTCGAATTGCCCTTTTTCCCTACTATCAGAGTTCATGAATCCATGGAACGGCTGAATTGACAGGATTGAACAGAACGTGCTAGTGGTGATGGCATTTGACAAGGAAGTAGTATTGCATATCTTTTTCTGNNNANNNTTTTTATTAGCTAGTTACCCATCTGCTTCTCATGATCTTTNNNNNNNNNNNNGCACTCATGATTANNNNTTCAGTTGNNNNNNNNCATGGCGTGNNNNCGNNNNNGNTTNNNATATTATTNNNNNTTCATACCAGGTNTNAAGTAACTACACTTT] [+] EMBL CF196024 [TGGCGTCGACAAGTGCTGAGTGCATGGGCAAACCTGACGATACCTCCAGTGGCGCTATCACAACTTGATTGGCAACTCTGGTATAAATTGATTTGGGCCCTTTCTTGGGTACTACATTTTCCCACTGCCTTGCCATGTGAACTCTCGGTGACGACATGAGCGGTTCTGTTCATCTTCCAACGTAATCAGTCGAATTGCCCTTTTTCCCTACTATCAGAGTTCATGAATCCATGGAACGGCTGAATTGACAGGATTGAACAGAACGTGCTAGTGGTGATGGCATTTGACAAGGAAGTAGTATTGCATATCTTTTTCTGNNNANNNTTTTTATTAGCTAGTTACCCATCTGCTTCTCATGATCTTTNNNNNNNNNNNNGCACTCATGATTANNNNTTCAGTTGNNNNNNNNCATGGCGTGNNNNCGNNNNNGNTTNNNATATTATTNNNNNTTCATACCAGGTNTNAAGTAACTACACTTT] consensusID : consensus_10595#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 273 fasta sequence [TGGCGTCGANNNNTGCTGAGTGCATGGGCAAACCTGACGATACCTCCAGTGGCGCTATCACAACTTGATTGGCAACTCTGGTATAAATTGATTTGGGCCCTTTCTTGGGTACTACATTTTCCCACTGCCTTGCCATGTGAACTCTCNNTGACGACATGAGCGGTTCTGTTCATCTTCCAACGTAATCAGNNNAATTGCCCTTTTTCCCTNNNNNCNNNGTTCATGAATCCATGGAACGGCTGAATTGACNNNATTGAACAGAACGNNCTNCNG] [+] EMBL CF196025 [TGGCGTCGANNNNTGCTGAGTGCATGGGCAAACCTGACGATACCTCCAGTGGCGCTATCACAACTTGATTGGCAACTCTGGTATAAATTGATTTGGGCCCTTTCTTGGGTACTACATTTTCCCACTGCCTTGCCATGTGAACTCTCNNTGACGACATGAGCGGTTCTGTTCATCTTCCAACGTAATCAGNNNAATTGCCCTTTTTCCCTNNNNNCNNNGTTCATGAATCCATGGAACGGCTGAATTGACNNNATTGAACAGAACGNNCTNCNG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_10595#1 TTAACCCAAACATAATTCGACAGTAGTACATAACATGATTCCAAAACCAAAAGTAGGGCA 60 consensus_10595#3 ------------------------------------------------------------ consensus_10595#0 ------------------------------------------------------------ consensus_10595#2 ------------------------------------------------------------ consensus_10595#1 TCACAATCTTCAGCGAACAAGCCTTTGCCGACCACGGTAACAATTCCTCCATAACAAGGG 120 consensus_10595#3 ------------------------------------------------------------ consensus_10595#0 ------------------------------------------------------------ consensus_10595#2 ------------------------------------------------------------ consensus_10595#1 TTGCGAAGGTAACCAGGATCAGACAAACAATCCCTCAGTTCTCCAGCAAGGCGGCAAGCA 180 consensus_10595#3 ------------------------------------------------------------ consensus_10595#0 ------------------------------------------------------------ consensus_10595#2 ------------------------------------------------------------ consensus_10595#1 CTACCGCTCTGGACGTCTGATCCTTGCTCGGACCAAAATCGGCAATGCTGGCATTTGGAA 240 consensus_10595#3 ------------------------------------------------------------ consensus_10595#0 ---------------------------------------------TGCTGGCATTTGGAA 15 consensus_10595#2 ------------------------------------------------------------ consensus_10595#1 ACTTATGGGGCAGAAGAGCCCTTTGCACAATGGCGTCGACAAGTGCTGAGTGCATGGGCA 300 consensus_10595#3 ------------------------------TGGCGTCGANNNNTGCTGAGTGCATGGGCA 30 consensus_10595#0 ACTTATGGGGCAGAAGAGCCCTTTGCACAATGGCGTCGACAAGTGCTGAGTGCATGGGCA 75 consensus_10595#2 ------------------------------TGGCGTCGACAAGTGCTGAGTGCATGGGCA 30 ********* ***************** consensus_10595#1 AACCTGACGATACCTCCAGTGGCGCTATCACAACTTGATTGGCAACTCTGGTATAAATTG 360 consensus_10595#3 AACCTGACGATACCTCCAGTGGCGCTATCACAACTTGATTGGCAACTCTGGTATAAATTG 90 consensus_10595#0 AACCTGACGATACCTCCAGTGGCGCTATCACAACTTGATTGGCAACTCTGGTATAAATTG 135 consensus_10595#2 AACCTGACGATACCTCCAGTGGCGCTATCACAACTTGATTGGCAACTCTGGTATAAATTG 90 ************************************************************ consensus_10595#1 ATTTGGGCCCTTTCTTGGGTACTACATTTTCCCACTGCCTTGCCATGTAAACTCTCGGTG 420 consensus_10595#3 ATTTGGGCCCTTTCTTGGGTACTACATTTTCCCACTGCCTTGCCATGTGAACTCTCNNTG 150 consensus_10595#0 ATTTGGGCCCTTTCTTGGGTACTACATTTTCCCACTGCCTTGCCATGTGAACTCTCGGTG 195 consensus_10595#2 ATTTGGGCCCTTTCTTGGGTACTACATTTTCCCACTGCCTTGCCATGTGAACTCTCGGTG 150 ************************************************ ******* ** consensus_10595#1 ACGACATGAGCGGTTCTGTTCATCTTCCAACGTAATCAGTCGAATTGCCCTTTTTCCCTA 480 consensus_10595#3 ACGACATGAGCGGTTCTGTTCATCTTCCAACGTAATCAGNNNAATTGCCCTTTTTCCCTN 210 consensus_10595#0 ACGACATGAGCGGTTCTGTTCATCTTCCAACGTAATCAGTCGAATTGCCCTTTTTCCCTA 255 consensus_10595#2 ACGACATGAGCGGTTCTGTTCATCTTCCAACGTAATCAGTCGAATTGCCCTTTTTCCCTA 210 *************************************** ***************** consensus_10595#1 CTATCAGAGTTCATGAATCCATGGAACGGCTGAATTGAC-AGGATTGAACAGAACGTGCT 539 consensus_10595#3 NNNNCNNNGTTCATGAATCCATGGAACGGCTGAATTGAC-NNNATTGAACAGAACGNNCT 269 consensus_10595#0 CTATCAGAGTTCATGAATCCATGGAACGGCTGAATTGACCAGGATTGAACAGAACGTGCT 315 consensus_10595#2 CTATCAGAGTTCATGAATCCATGGAACGGCTGAATTGAC-AGGATTGAACAGAACGTGCT 269 * ******************************* ************* ** consensus_10595#1 AGTGGTGATGGCATTTGACANGGANNANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN 599 consensus_10595#3 NCNG-------------------------------------------------------- 273 consensus_10595#0 AGTGGTGATGGCATTTGACAAGGAAGTAGTATTGCATATCTTTTTCTGAGCAAGATTTTT 375 consensus_10595#2 AGTGGTGATGGCATTTGACAAGGAAGTAGTATTGCATATCTTTTTCTGNNNANNNTTTTT 329 * consensus_10595#1 NNNNNNNNNNNNNNNNNNNN---------------------------------------- 619 consensus_10595#3 ------------------------------------------------------------ consensus_10595#0 ATTAGCTAGTTACCCATCTGCTTCTCATGATCTTTAGCACCCAAAGGGCACTCATGATTA 435 consensus_10595#2 ATTAGCTAGTTACCCATCTGCTTCTCATGATCTTTNNNNNNNNNNNNGCACTCATGATTA 389 consensus_10595#1 ------------------------------------------------------------ consensus_10595#3 ------------------------------------------------------------ consensus_10595#0 CAATTTCAGTTGACAAAGAACATGGCGTGCCAACGTATTTGATTAGCATATTATTACAAT 495 consensus_10595#2 NNNNTTCAGTTGNNNNNNNNCATGGCGTGNNNNCGNNNNNGNTTNNNATATTATTNNNNN 449 consensus_10595#1 ------------------------------------------------------------ consensus_10595#3 ------------------------------------------------------------ consensus_10595#0 TTCATACCAGGTATAAAGTAACTACACTTTCCTGCATATGCCATGTTCTTTGTCAAATAC 555 consensus_10595#2 TTCATACCAGGTNTNAAGTAACTACACTTT------------------------------ 479 consensus_10595#1 ------------------------------------------------------------ consensus_10595#3 ------------------------------------------------------------ consensus_10595#0 CTGGTGCTTGCCTGTTATACGTTTTAGCACTATGTATACTAGTAATATGCCCGTGCTAAA 615 consensus_10595#2 ------------------------------------------------------------ consensus_10595#1 ------------------------------------------------------------ consensus_10595#3 ------------------------------------------------------------ consensus_10595#0 CGCTACGGTGCATTCCCTTGTCTTTAATAACTTTTAAAATTTCATGTTGGGAAAAAAATT 675 consensus_10595#2 ------------------------------------------------------------ consensus_10595#1 ------------------------ consensus_10595#3 ------------------------ consensus_10595#0 TATATGATATGTTCAAAAAAAAAA 699 consensus_10595#2 ------------------------ |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||