These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_10597#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 6 consensus length = 2011 fasta sequence [CTCTTAACTATATTACGTAAAAATTACGGCATTCGCTTTAAGCGTCAGTGCGTCACACATAGTGTTGCAAAGGAAAAATGATGTGACCGTATATGTGCTAGGACGAAGATCTTAGAAACAGAGAGTACCCGCAAGAGCTTCACTTGTCGATGTCTTTATCCAAAATTCCTTCCTGAATCATTATTGGAGTAATTTTAATCAGCTGATGCTAAAACTGTCATCCCTATCACATC-ATCTGAGAACATATATAATTACGTGCTCTATTTGGACTACACGATGCTGTCATCGTAACTAAAATAGCTATAAGCATCAGTAATGCCATTTAGGTCTCAACTCCTCTTCTTCCTCGGTCAACTCCTG-GTATCTGTACCATTG-CGATGCTG-CTTTACCAACAGGCAATGGAGGTCGGACAAAGATCTCAACAGGCTTGGGAACATGTACTCTCAAATGCAGTTCACCACTCTCATTGTCTTCTTCCTCAGCACTCTCATCTGGGTTGCTTGATGGCACACCAAGTGGCTCAACCGCAACCCACCCGAGACCAGAAATTGCAATGTCACAAGCAGGTCTATCAGACTCTTCGTATTTTATCTGCAACTCACGAACACCCTGCAGACCAACCCATCCTTCAGCCTTCTCTTTGCCAGCTGGGGGAGTCAATGTAACTCCAACTTCTCTCTCATAAAATTCATCTGCTTCTGTGGTTGGGACCATATTAATCTTTAGCTTCTTGGGTCCATAGAACGTCAGTCGTGTGCGTGGAAGAGCCTTGACAACATCAATACGGACTAGTCCACCCCAGAATAATGAATTCCCACTCAATCCAACATCTGTATCATTAGCCTGAACACAACATTATATTAGGAAAACACCGTGCCCTTAGACGACTTTGTGGTGCAAGAGAAGGCAGATCATCAGCATGGATAACTGCTGCTTGCCGGTGGTGAAGATGGACTCCAGGTGTATCATATAATTTCCCGCCTCCTAAAAATGCTTCAATTTGAATAGGACCAAGGGTCGTTCCAGGAACAGCAGATTGTATCGGCTTGTATTTTTGAGTTGCAGCTGCCACTGGATCCTTATATGCCATCGTCCTTAGCATAGCACTTATAAATGCAGATTTCCCAACATTTGCTGAACCCAGTATATATACATCTCGGCCCTTCTTTTCCTGCTGAATCTGGATATAACCCCAGTGACGCCACCGAGTGACTTTGAGCTTGTCAAATGGACACTAAGTTCGCTGAGCTTCTTCTTGACAACTGCCTCAACAACCCAGTCGCCAATGCAATTCAAATCTGTATCTCTAGGAAGGAGATCAACCTTTGTGATGAGTAGTATAATAGGATTAGCACCAGCAAAATCGCGCACACGCGCCAGGAAGCTCCCATTGAAGTCAACTATGTCAACCAGCTTGATAATCAAAGCTTTCTCATGACGAAGGTAGGAGAGCTTGTCCCTGAGTTGGTCCGCGGAAAAGAGGTGCTTCCCTCCAGGATAGCCGCCATGGCCACCAACAGCAGTGATCATGTGGCCATGAGACAAGAGCTTGCATCTCCCACATAGCACGGTTCTCAGCTGATGGTGTCTCTTCTTCAGGTCGTAGGTGGCGGGGTGGACGTAGCCGGGCGCGGCCTCGTCGGCCGTCTGCAGCGGCGCGCCGCAGCCGTAGCAGGCGGCGGCGGAGGGCTTCCGCGCGAGGGCCTTGCGCTTCTCCCGGCGGCGGCGGCGCCTCTCGGCGTCCTCCGGAGCGAGGACGCGGGCGGCGGCCTCGGCCGCGAGCTGGGTGCCGAGGAAGCGGTCCCCGCGGGATGGCGCGGCGGGGCCCGCCCCTTCCGGAGGTGGCGGGGCGGTGGAGGCGGCGCGCGTGGGGGAGAACGAGGAGGGGTTGGGGGCGAGCTGTGGCTTGGGGAGGGAGAGGGAGAGGAAGAGTAGCCGCTGGCTCAGGCTCAGCAGAGGAGGCGCCGCCATTGCCGCCGATGCTCTACTAGTACTAGGAGCAGAAGGAGAA] [+] EMBL CB635975 [CTCTTAACTATATTACGTAAAAATTACGGCATTCGCTTTAAGCGTCAGTGCGTCACACATAGTGTTGCAAAGGAAAAATGATGTGACCGTATATGTGCTAGGACGAAGATCTTAGAAACAGAGAGTACCCGCAAGAGCTTCACTTGTCGATGTCTTTATCCAAAATTCCTTCCTGAATCATTATTGGAGTAATTTTAATCAGCTGATGCTAAAACTGTCATCCCTATCACATC ATCTGAGAACATATATAATTACGTGCTCTATTTGGACTACACGATGCTGTCATCGTAACTAAAATAGCTATAAGCATCAGTAATGCCATTTAGGTCTCAACTCCTCTTCTTCCTCGGTCAACTCCTG GTATCTGTACCATTG CGATGCTG CTTTACCAACAGGCAATGGAGGTCGGACAAAGATCTCAACAGGCTTGGGAACATGTACTCTCAAATGCAGTTCACCACTCTCATTGTCTTCTTCCTCAGCACTCTCATCTGGGTTGCTTGATGGCACACCAAGTGGCTCAACCGCAACCCACCCGAGACCAGAAATTGCAATGTCACAAGCAGGTCTATCAGACTCTTCGTATTTTATCTGCAACTCACGAACACCCTGCAGACCAACCCATCCTTCAGCCTTCTCTTTGCCAGCTGGGGGAGTCAATGTAACTCCAACTTCTCTCTCATAAAATTCATCTGCTTCTGTGGTTGGGAC ] [+] EMBL CB669582 [ tctttttTTTATCCAAAATTCCTTCCTGAATCATTATTGGAGTAATTTTAATCAGCTGATGCTAAAACTGTCATCCCTATCACATC ATCTGAGAACATATATAATTACGTGCTCTATTTGGACTACACGATGCTGTCATCGTAACTAAAATAGCTATAAGCATCAGTAATGCCATTTAGGTCTCAACTCCTCTTCTTCCTCGGTCAACTCCTG GTATCTGTACCATTG CGATGCTG CTTTACCAACAGGCAATGGAGGTCGGACAAAGATCTCAACAGGCTTGGGAACATGTACTCTCAAATGCAGTTCACCACTCTCATTGTCTTCTTCCTCAGCACTCTCATCTGGGTTGCTTGATGGCACACCAAGTGGCTCAACCGCAACCCACCCGAGACCAGAAATTGCAATGTCACAAGCAGGTCTATCAGACTCTTCGTATTTTATCTGCAACTCACGAACACCCTGCAGACCAACCCATCCTTCAGCCTTCTCTTTGCCAGCTGGGGGAGTCAATGTAACTCCAACTTCTCTCTCATAAAATTCATCTGCTTCTGTGGTTGGGACCATATTAATCTTTAGCTTCTTGGGTCCATAGAACGTCAGTCGTGTGCGTGGAAGAGCCTTGACAACATCAATACGGACTAGTCCACCCCAGAATAATGAATTCCCACTCAATCCAACATCTGTATCATTAGCCTGAACACAACATTATATTAGGAAAACACCGTGCCCTTAGACGACTTTGTGGTGCAAGAGAAGGCAGATCATCAGCATGGATAAC ] [+] EMBL CB669543 [ CTGATGCTAAAACTGTCATCCCTATCACATCGATCTGAGAACATATATAATTACGTGCTCGATTTGGACTACACGATGCTGTCATCGGAACTAAAATAGCTATAGGCATCAGTAATGCCATTTAGGACTCAACTCCTCTTCTTCCTCGGTCAACTCCTGAGAATCTGTACCATTGTCGATGCTGTCTTTACCAACAGGCAATGGAGGTCGGACAAAGATCTCAACAGGCTTGGGAACATGTACTCTCAAATGCAGTTCACCACTCGCATTGTCTTCTTCCTCACCACTCTCATCTGGGTTGCTTGATGGCACACCAGGTGGCTCAACCGCAACCCACCCGAGACCAAAAATTGCAATGTCACAAGCAGGTCTATCAGACTCTTCATATTTTATCTGCAACTCACGAACACCCTGCAGACCAACCCATCCTTCAGCCTTCTCTTTGCCAGCTGGGGGAGTCAATGTAACTCCAACTTCTCTCTCATAAAATTCATCTGCTTCTGTGGATGGGACCATATTAATCTTTAGCTTCTTGGGGCCATAGAACGACAGGCGTGTGCGTGGAAGATCCTTGACAACATCAATACGGACTACTCCACCCCAGAATAATGAATTCCCACTCAATCCAACATCTGTATCATTAGCCTGAACACTACATTATATTAGGAAAACACCGTGCCCTTAGA ] [-] EMBL CB669581 [ TGAATTCCCACTCAATCCAACATCTGTATCATTAGCCTGAACGCAACATTATATTAGGAAAACACCGTGCCCGTAGACGACTTTGTGGTGCAAGAGAAGGCAGATCATCAGCATGGATAACTGCTGCTTGCCGGTGGTGAAGATGGACTCCAGGTGTATCATATAATTTCCCGCCTCCTAAAAATGCTTCAATTTGAATAGGACCAAGGGTCGTTCCAGGAACAGCAGATTGTATCGGCTTGTATTTTTGAGTTGCAGCTGCCACTGGATCCTTATATGCCATCGTCCTTAGCATAGCACTTATAAATGCAGATTTCCCAACATTTGCTGAACCCAGTATATATACATCTCGGCCCTTCTTTTCCTGCTGAATCTGGATATAACCCCAGTGACGCCACCGAGTGACTTTGAGCTTGTCAAATGGACACTAAGTTCGCTGAGCTTCTTCTTGACAACTGCCTCAACAACCCAGTCGCCAATGCAATTCAAATCTGTATCTCTAGGAAGGAGATCAACCTTTGTGATGAGTAGTATAATAGGATTAGCACCAGCAAAATCGCGCACACGCGCCAGGAAGCTCCCATTGAAGTCAACTATGTCAACCAGCTTGATAATCAAAGCTTTCTCATGACGAAGGTAGGAGAGCTTGTCCCTGAGTTGGTCCGCGGAAAAGAGGTGCTTCCC ] [-] EMBL CB669542 [ caGACTTTGTGGTGCAAGAGAAGGCAGATCATCAGCATGGATAACTGCTGCTTGCCGGTGGTGAAGATGGACTCCAGGTGTATCATATAATTTCCCGCCTCCTAAAAATGCTTCAATGAGAATAGGGCCACGGGTCGTTCCAGGAACAGCAGATTGTATCGGCTTGTATTTTTGAGTTGCAGCTGCCACTGGATCCTTATATGCCATCGTCCGTAGCATAGCACTTATAAATGCAGATTTCCCTTCATTGTCTGAACCCAGTATATATACATCTCGGCC ] [-] EMBL CB635974 [ TTGTGATGACTAGTATAATAGGATTAGCACCAGCAAAATCGCGCACACGCGCCAGGAAGCTCCCAGTGAAGTCAACTATGTCAACCAGCTTGATAATCAAAGCTTTCTCATGACGAAGGTAGGAGAGCTTGTCCCTGAGTTGGTCCGCGGAAACGAACTGCTTCCCTCCAGGATAGCCGCCATGGCCACCAACAGCAGTGATCATGTGGCCATGAGACAAGAGCTTGCATCTCCCACATAGCACGGTTCTCAGCTGATGGTGTCTCTTCTTCAGGTCGTAGGTGGCGGGGTGGACGTAGCCGGGCGCGGCCTCGTCGGCCGTCTGCAGCGGCGCGCCGCAGCCGTAGCAGGCGGCGGCGGAGGGCTTCCGCGCGAGGGCCTTGCGCTTCTCCCGGCGGCGGCGGCGCCTCTCGGCGTCCTCCGGAGCGAGGACGCGGGCGGCGGCCTCGGCCGCGAGCTGGGTGCCGAGGAAGCGGTCCCCGCGGGATGGCGCGGCGGGGCCCGCCCCTTCCGGAGGTGGCGGGGCGGTGGAGGCGGCGCGCGTGGGGGAGAACGAGGAGGGGTTGGGGGCGAGCTGTGGCTTGGGGAGGGAGAGGGAGAGGAAGAGTAGCCGCTGGCTCAGGCTCAGCAGAGGAGGCGCCGCCATTGCCGCCGATGCTCTACTAGTACTAGGAGCAGAAGGAGAA] consensusID : consensus_10597#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 236 fasta sequence [CCATACTAATCATTGTAGCGTTCTTGGGCTCCACTAGAACAGTCATCTCTGTGCTGCCCCGCGAAGAGCCCTTTCGACGGACATCCATATCGGATTAGTCCACCCCAGAATAATGAACTTCCCACTCGATCCCACATCTGTATCATTAGCAGGAAACACCGGGCCCTTAGACGACTGTGTGGTGCAAGAGAAGGCAGATCATCACCATGGATAACTGCTGCTTGCCGCTAGTTTAG] [+] EMBL BI810511 [CCATACTAATCATTGTAGCGTTCTTGGGCTCCACTAGAACAGTCATCTCTGTGCTGCCCCGCGAAGAGCCCTTTCGACGGACATCCATATCGGATTAGTCCACCCCAGAATAATGAACTTCCCACTCGATCCCACATCTGTATCATTAGCAGGAAACACCGGGCCCTTAGACGACTGTGTGGTGCAAGAGAAGGCAGATCATCACCATGGATAACTGCTGCTTGCCGCTAGTTTAG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_10597#0 CTCTTAACTATATTACGTAAAAATTACGGCATTCGCTTTAAGCGTCAGTGCGTCACACAT 60 consensus_10597#1 ------------------------------------------------------------ consensus_10597#0 AGTGTTGCAAAGGAAAAATGATGTGACCGTATATGTGCTAGGACGAAGATCTTAGAAACA 120 consensus_10597#1 ------------------------------------------------------------ consensus_10597#0 GAGAGTACCCGCAAGAGCTTCACTTGTCGATGTCTTTATCCAAAATTCCTTCCTGAATCA 180 consensus_10597#1 ------------------------------------------------------------ consensus_10597#0 TTATTGGAGTAATTTTAATCAGCTGATGCTAAAACTGTCATCCCTATCACATCATCTGAG 240 consensus_10597#1 ------------------------------------------------------------ consensus_10597#0 AACATATATAATTACGTGCTCTATTTGGACTACACGATGCTGTCATCGTAACTAAAATAG 300 consensus_10597#1 ------------------------------------------------------------ consensus_10597#0 CTATAAGCATCAGTAATGCCATTTAGGTCTCAACTCCTCTTCTTCCTCGGTCAACTCCTG 360 consensus_10597#1 ------------------------------------------------------------ consensus_10597#0 GTATCTGTACCATTGCGATGCTGCTTTACCAACAGGCAATGGAGGTCGGACAAAGATCTC 420 consensus_10597#1 ------------------------------------------------------------ consensus_10597#0 AACAGGCTTGGGAACATGTACTCTCAAATGCAGTTCACCACTCTCATTGTCTTCTTCCTC 480 consensus_10597#1 ------------------------------------------------------------ consensus_10597#0 AGCACTCTCATCTGGGTTGCTTGATGGCACACCAAGTGGCTCAACCGCAACCCACCCGAG 540 consensus_10597#1 ------------------------------------------------------------ consensus_10597#0 ACCAGAAATTGCAATGTCACAAGCAGGTCTATCAGACTCTTCGTATTTTATCTGCAACTC 600 consensus_10597#1 ------------------------------------------------------------ consensus_10597#0 ACGAACACCCTGCAGACCAACCCATCCTTCAGCCTTCTCTTTGCCAGCTGGGGGAGTCAA 660 consensus_10597#1 ------------------------------------------------------------ consensus_10597#0 TGTAACTCCAACTTCTCTCTCATAAAATTCATCTGCTTCTGTGGTTGGGACCATATTAAT 720 consensus_10597#1 --------------------------------------CCATACTAATCATTGTAGCGTT 22 * * * * ** * consensus_10597#0 CTTTAGCTTCTTGGGTCCATAGAACGTCAGTCGTGTGCGTGGAAGAGCCTT---GACA-A 776 consensus_10597#1 CTTGGGCTCCACTAGAACAGTCATC-TCTGTGCTGCCCCGCGAAGAGCCCTTTCGACGGA 81 *** *** * * ** * * ** ** ** * ******** * *** * consensus_10597#0 CATCAATA-CGGACTAGTCCACCCCAGAATAATGAA-TTCCCACTCAATCCAACATCTGT 834 consensus_10597#1 CATCCATATCGGATTAGTCCACCCCAGAATAATGAACTTCCCACTCGATCCCACATCTGT 141 **** *** **** ********************** ********* **** ******** consensus_10597#0 ATCATTAGCCTGAACACAACATTATATTAGGAAAACACCGTGCCCTTAGACGACTTTGTG 894 consensus_10597#1 ATCATTAGC--------------------AGGAAACACCGGGCCCTTAGACGACTGTGTG 181 ********* * ******** ************** **** consensus_10597#0 GTGCAAGAGAAGGCAGATCATCAGCATGGATAACTGCTGCTTGCCGGTGGTGAAGATGGA 954 consensus_10597#1 GTGCAAGAGAAGGCAGATCATCACCATGGATAACTGCTGCTTGCCGCTAGTTTAG----- 236 *********************** ********************** * ** ** consensus_10597#0 CTCCAGGTGTATCATATAATTTCCCGCCTCCTAAAAATGCTTCAATTTGAATAGGACCAA 1014 consensus_10597#1 ------------------------------------------------------------ consensus_10597#0 GGGTCGTTCCAGGAACAGCAGATTGTATCGGCTTGTATTTTTGAGTTGCAGCTGCCACTG 1074 consensus_10597#1 ------------------------------------------------------------ consensus_10597#0 GATCCTTATATGCCATCGTCCTTAGCATAGCACTTATAAATGCAGATTTCCCAACATTTG 1134 consensus_10597#1 ------------------------------------------------------------ consensus_10597#0 CTGAACCCAGTATATATACATCTCGGCCCTTCTTTTCCTGCTGAATCTGGATATAACCCC 1194 consensus_10597#1 ------------------------------------------------------------ consensus_10597#0 AGTGACGCCACCGAGTGACTTTGAGCTTGTCAAATGGACACTAAGTTCGCTGAGCTTCTT 1254 consensus_10597#1 ------------------------------------------------------------ consensus_10597#0 CTTGACAACTGCCTCAACAACCCAGTCGCCAATGCAATTCAAATCTGTATCTCTAGGAAG 1314 consensus_10597#1 ------------------------------------------------------------ consensus_10597#0 GAGATCAACCTTTGTGATGAGTAGTATAATAGGATTAGCACCAGCAAAATCGCGCACACG 1374 consensus_10597#1 ------------------------------------------------------------ consensus_10597#0 CGCCAGGAAGCTCCCATTGAAGTCAACTATGTCAACCAGCTTGATAATCAAAGCTTTCTC 1434 consensus_10597#1 ------------------------------------------------------------ consensus_10597#0 ATGACGAAGGTAGGAGAGCTTGTCCCTGAGTTGGTCCGCGGAAAAGAGGTGCTTCCCTCC 1494 consensus_10597#1 ------------------------------------------------------------ consensus_10597#0 AGGATAGCCGCCATGGCCACCAACAGCAGTGATCATGTGGCCATGAGACAAGAGCTTGCA 1554 consensus_10597#1 ------------------------------------------------------------ consensus_10597#0 TCTCCCACATAGCACGGTTCTCAGCTGATGGTGTCTCTTCTTCAGGTCGTAGGTGGCGGG 1614 consensus_10597#1 ------------------------------------------------------------ consensus_10597#0 GTGGACGTAGCCGGGCGCGGCCTCGTCGGCCGTCTGCAGCGGCGCGCCGCAGCCGTAGCA 1674 consensus_10597#1 ------------------------------------------------------------ consensus_10597#0 GGCGGCGGCGGAGGGCTTCCGCGCGAGGGCCTTGCGCTTCTCCCGGCGGCGGCGGCGCCT 1734 consensus_10597#1 ------------------------------------------------------------ consensus_10597#0 CTCGGCGTCCTCCGGAGCGAGGACGCGGGCGGCGGCCTCGGCCGCGAGCTGGGTGCCGAG 1794 consensus_10597#1 ------------------------------------------------------------ consensus_10597#0 GAAGCGGTCCCCGCGGGATGGCGCGGCGGGGCCCGCCCCTTCCGGAGGTGGCGGGGCGGT 1854 consensus_10597#1 ------------------------------------------------------------ consensus_10597#0 GGAGGCGGCGCGCGTGGGGGAGAACGAGGAGGGGTTGGGGGCGAGCTGTGGCTTGGGGAG 1914 consensus_10597#1 ------------------------------------------------------------ consensus_10597#0 GGAGAGGGAGAGGAAGAGTAGCCGCTGGCTCAGGCTCAGCAGAGGAGGCGCCGCCATTGC 1974 consensus_10597#1 ------------------------------------------------------------ consensus_10597#0 CGCCGATGCTCTACTAGTACTAGGAGCAGAAGGAGAA 2011 consensus_10597#1 ------------------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||