These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_1060#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 562 fasta sequence [CGGATAAGTGCAATATTCATTTCTCATGGGTGATTTACGTACAAAAAAAAAAAGATAGCATGGAGGACCATGGCATATGCAGAATAGAGCAGAGAAAAGGTTGTATCTTTATTCAGTTGTACATGCATCATCTCACAATCTTGAGTTAAATTTGCTCTGTGCTTGAATAGATGACTGGCAATGGCACAGTAAGATTGTGCCCGATCAATCTGCTTGGATAGTTCTACATCTGCATTTGCTAAAATCTGATTCTACATCTGCATTTGTTAAATCTGATTCTACTTCCGCTTCAGACTAACAGGTCATGAATATTCGCCTAATATAGTTTCTTTGTCTGATCAAGTTCAAGAAAATCACTTGACATTTCATTTAATTAACAGCTCATCGAGAACAGCCTGAAGACACGTCAAAAATCCCCAACTGCGCTGCGATCAACACATCCTACCTCTGCACCATTGCCGATGCTACGTCCTTCCCTGAGCACTCTGCGCAGAGCATGCCGTCGTCGCTCGCGCCCTCTCCCCTGAGCACTCTGCGCAGAGCATGCCATCGTCGCCCATGC] [+] EMBL CF326083 [CGGATAAGTGCAATATTCATTTCTCATGGGTGATTTACGTACAAAAAAAAAAAGATAGCATGGAGGACCATGGCATATGCAGAATAGAGCAGAGAAAAGGTTGTATCTTTATTCAGTTGTACATGCATCATCTCACAATCTTGAGTTAAATTTGCTCTGTGCTTGAATAGATGACTGGCAATGGCACAGTAAGATTGTGCCCGATCAATCTGCTTGGATAGTTCTACATCTGCATTTGCTAAAATCTGATTCTACATCTGCATTTGTTAAATCTGATTCTACTTCCGCTTCAGACTAACAGGTCATGAATATTCGCCTAATATAGTTTCTTTGTCTGATCAAGTTCAAGAAAATCACTTGACATTTCATTTAATTAACAGCTCATCGAGAACAGCCTGAAGACACGTCAAAAATCCCCAACTGCGCTGCGATCAACACATCCTACCTCTGCACCATTGCCGATGCTACGTCCTTCCCTGAGCACTCTGCGCAGAGCATGCCGTCGTCGCTCGCGCCCTCTCCCCTGAGCACTCTGCGCAGAGCATGCCATCGTCGCCCATGC] consensusID : consensus_1060#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 544 fasta sequence [AAGGTTGTATCTTTATTCAGTTGTACATGCATCATCTCACAATCTTGAGTTAAATTTGCTCTGTGCTTGAATAGATGACTGGCAATGGCACAGTAAGATTGTGCCCGATCAATCTGCTTGGATAGTTCTACATCTGCATTTGCTAAAATCTGATTCTACATCTGCATTTGTTAAATCTGATTCTACTTCCGCTTCAGACTAACAGGTCATGAATATTCGCCTAATATAGTTTCTTTGTCTGATCAAGTTCAAGAAAATCACTTGACATTTCATTTAATTAACAGCTCATCGAGAACAGCCTGAAGACACGTCAAAAATCCCCAACTCTGCACCATTGCCGATGCTACGTCCTTCCCTGAGCACTCTGCGCAGAGCATGCCGTCGTCGCTCGCGCCCTCTCCCCTGAGCACTCTGCGCAGAGCATGCCATCGTCGCCCATGCCCTTCTCTGCAGAGTGGGGAGGGCGGAGCATGGGGCAGAGCGGGTGGGGGGAATCGGCACCCCTCCTATTCTTTTATTCCATGATCTGATAATTGTTGAGACA] [-] EMBL AK111391 [AAGGTTGTATCTTTATTCAGTTGTACATGCATCATCTCACAATCTTGAGTTAAATTTGCTCTGTGCTTGAATAGATGACTGGCAATGGCACAGTAAGATTGTGCCCGATCAATCTGCTTGGATAGTTCTACATCTGCATTTGCTAAAATCTGATTCTACATCTGCATTTGTTAAATCTGATTCTACTTCCGCTTCAGACTAACAGGTCATGAATATTCGCCTAATATAGTTTCTTTGTCTGATCAAGTTCAAGAAAATCACTTGACATTTCATTTAATTAACAGCTCATCGAGAACAGCCTGAAGACACGTCAAAAATCCCCAACTCTGCACCATTGCCGATGCTACGTCCTTCCCTGAGCACTCTGCGCAGAGCATGCCGTCGTCGCTCGCGCCCTCTCCCCTGAGCACTCTGCGCAGAGCATGCCATCGTCGCCCATGCCCTTCTCTGCAGAGTGGGGAGGGCGGAGCATGGGGCAGAGCGGGTGGGGGGAATCGGCACCCCTCCTATTCTTTTATTCCATGATCTGATAATTGTTGAGACA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_1060#0 CGGATAAGTGCAATATTCATTTCTCATGGGTGATTTACGTACAAAAAAAAAAAGATAGCA 60 consensus_1060#1 ------------------------------------------------------------ consensus_1060#0 TGGAGGACCATGGCATATGCAGAATAGAGCAGAGAAAAGGTTGTATCTTTATTCAGTTGT 120 consensus_1060#1 ------------------------------------AAGGTTGTATCTTTATTCAGTTGT 24 ************************ consensus_1060#0 ACATGCATCATCTCACAATCTTGAGTTAAATTTGCTCTGTGCTTGAATAGATGACTGGCA 180 consensus_1060#1 ACATGCATCATCTCACAATCTTGAGTTAAATTTGCTCTGTGCTTGAATAGATGACTGGCA 84 ************************************************************ consensus_1060#0 ATGGCACAGTAAGATTGTGCCCGATCAATCTGCTTGGATAGTTCTACATCTGCATTTGCT 240 consensus_1060#1 ATGGCACAGTAAGATTGTGCCCGATCAATCTGCTTGGATAGTTCTACATCTGCATTTGCT 144 ************************************************************ consensus_1060#0 AAAATCTGATTCTACATCTGCATTTGTTAAATCTGATTCTACTTCCGCTTCAGACTAACA 300 consensus_1060#1 AAAATCTGATTCTACATCTGCATTTGTTAAATCTGATTCTACTTCCGCTTCAGACTAACA 204 ************************************************************ consensus_1060#0 GGTCATGAATATTCGCCTAATATAGTTTCTTTGTCTGATCAAGTTCAAGAAAATCACTTG 360 consensus_1060#1 GGTCATGAATATTCGCCTAATATAGTTTCTTTGTCTGATCAAGTTCAAGAAAATCACTTG 264 ************************************************************ consensus_1060#0 ACATTTCATTTAATTAACAGCTCATCGAGAACAGCCTGAAGACACGTCAAAAATCCCCAA 420 consensus_1060#1 ACATTTCATTTAATTAACAGCTCATCGAGAACAGCCTGAAGACACGTCAAAAATCCCCAA 324 ************************************************************ consensus_1060#0 CTGCGCTGCGATCAACACATCCTACCTCTGCACCATTGCCGATGCTACGTCCTTCCCTGA 480 consensus_1060#1 CT-------------------------CTGCACCATTGCCGATGCTACGTCCTTCCCTGA 359 ** ********************************* consensus_1060#0 GCACTCTGCGCAGAGCATGCCGTCGTCGCTCGCGCCCTCTCCCCTGAGCACTCTGCGCAG 540 consensus_1060#1 GCACTCTGCGCAGAGCATGCCGTCGTCGCTCGCGCCCTCTCCCCTGAGCACTCTGCGCAG 419 ************************************************************ consensus_1060#0 AGCATGCCATCGTCGCCCATGC-------------------------------------- 562 consensus_1060#1 AGCATGCCATCGTCGCCCATGCCCTTCTCTGCAGAGTGGGGAGGGCGGAGCATGGGGCAG 479 ********************** consensus_1060#0 ------------------------------------------------------------ consensus_1060#1 AGCGGGTGGGGGGAATCGGCACCCCTCCTATTCTTTTATTCCATGATCTGATAATTGTTG 539 consensus_1060#0 ----- consensus_1060#1 AGACA 544 |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||