These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_10600#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 6 consensus length = 1757 fasta sequence [AACCCTAGACAATTGGCGACCTCGAAAAGCCCTAGAGCCGTCTCCAATGGCGGACCACCAGCCCGCCGCCTCCTCCCCCAAGAGGAAGAAGAAGCACTCCAAGAAGCCGGAGGACAGCAATGCCACCGTCGACGACTCCCTCGCCGCCGCCGCCTCCCCCTCCCCCAAGAAGAAGGAGAAGCACTCCAAGAAGAAGCGGGAAGCCATCGATGCCACCATGGCCGCTGCCTCCCCCAAGAAGAAGGAGAAGAAGCACTCCAAGAAGCAGGAAGACACCAATGTCCCCGAGAAGAAGCGGGAAGTCGTGCATGTCACCGTGGACGCCTCCCTCACCGGCGCCGCCGCCGCGGGCGCAGCCCCCGTCGTCGCCTACTTCCCGACCGGCTACGACCCCCTGGCCGCCGGCGGCGGCAGGAAGGGTAGAGAGGCCCCCCGCACGAGGCTGTTCCGCCACACGAAGCACCCATCCCGCATCGAGCTCGTGGTCGGCGCCGCCACTGGTGGCGGCGGAGGGCCGGACTTCGTCGGGCGGAGCTACGCCGGCGAGGCCGTGCTGCCGCAGCTCACTGGCTACGCGCTCGGTGTCCTCGACAAGGCCTCCGGCACCCTCAAGGTCGTCCCCATCGCCGCCAACAAGAAACTGGCGCATTCGCAGCACTCTGGGGCAGTAGGGGAGGCAGTATCATCAGCAGGAGATGCTGACTTGAAGGTACAGGATATTACCAAGGCGTTTGGAACCCAGAAAGACAAGGCCAAGGATATTAAGTGGCAGTCATTAAATGAACAAAGGAATGATCCTTCTGCTTTTATGGACCTTGACCTTGGGAATGCTGATACCAGTGTGGGTGCTAATGAAAGTCAAGAACCAACTGTACGGAACATTCCACCTTATGATCCTGCAGCAGATACATCAGAAAGGGCATATCTTTTTGATGAGATTATTCCAAAGAGTATAAGGCCGCACCTTGTGGATATTATAGGACATTTTGAGTCAGGAGAAATTTCTTCAAAAGGCTATGGGAGTTTTGTGTCAAATCGTGTTAATAAATTACAGGAGCTTCAGGGTGAAGATAAGGAGAGGCTTGCTTGGATACTGTCCTACATCACACATCTCCTATCCCTGCTGGCACGGAACAGCTCCATGTCCAAGCGGCACAGAAAGGAAAACCAGGCTACCAGTGGACCAGTGATCCCACAGTATGTATATCGTAAGATGGTGCTAATGTTTACGGAACCAGGATCTAGCGCCTTGTCAACAGAGAAACACGAGCTTCTGATCAACTACATTCTCGTACTCACGCTCTACGCTGATGACTTCAGATCCGACCCTAAGGATATATGTGAAGACCTGAAAATGACCCGCCAGATGATTAAACCATATTATGACCAGCTGGGATGCAAATCTTCGTCGGCCGGTGCATTTAAATCCTCTGTAATGACACTTCCAGCTCCCCTCAAGTTCCCAAAAGAAGCTACAAGGAGAAAGCGACGAAGGTTCTGATCATCTCAGAAGGATCTTTAGCCTTATCTGAATGTGGGTGTGATAGGAAAAGATTGTTCGAAGTTGGGCCTGAGTTTATGCATGCTCAGCCCAGCCTTCCGAATTACTGAAACATGTGGAATATGGCTTTTGCCTTGTTTTTGTTTCCCCTTGTCACCTGGAGTTGCTGTCACAAAGGCAGAATATTGTTTATGTATTGATGACATTTTTTAACCCTTTTTTTTTCTCATCTTGCCTACCAGAATTTACATTGAAG] [+] EMBL AK069228 [AACCCTAGACAATTGGCGACCTCGAAAAGCCCTAGAGCCGTCTCCAATGGCGGACCACCAGCCCGCCGCCTCCTCCCCCAAGAGGAAGAAGAAGCACTCCAAGAAGCCGGAGGACAGCAATGCCACCGTCGACGACTCCCTCGCCGCCGCCGCCTCCCCCTCCCCCAAGAAGAAGGAGAAGCACTCCAAGAAGAAGCGGGAAGCCATCGATGCCACCATGGCCGCTGCCTCCCCCAAGAAGAAGGAGAAGAAGCACTCCAAGAAGCAGGAAGACACCAATGTCCCCGAGAAGAAGCGGGAAGTCGTGCATGTCACCGTGGACGCCTCCCTCACCGGCGCCGCCGCCGCGGGCGCAGCCCCCGTCGTCGCCTACTTCCCGACCGGCTACGACCCCCTGGCCGCCGGCGGCGGCAGGAAGGGTAGAGAGGCCCCCCGCACGAGGCTGTTCCGCCACACGAAGCACCCATCCCGCATCGAGCTCGTGGTCGGCGCCGCCACTGGTGGCGGCGGAGGGCCGGACTTCGTCGGGCGGAGCTACGCCGGCGAGGCCGTGCTGCCGCAGCTCACTGGCTACGCGCTCGGTGTCCTCGACAAGGCCTCCGGCACCCTCAAGGTCGTCCCCATCGCCGCCAACAAGAAACTGGCGCATTCGCAGCACTCTGGGGCAGTAGGGGAGGCAGTATCATCAGCAGGAGATGCTGACTTGAAGGTACAGGATATTACCAAGGCGTTTGGAACCCAGAAAGACAAGGCCAAGGATATTAAGTGGCAGTCATTAAATGAACAAAGGAATGATCCTTCTGCTTTTATGGACCTTGACCTTGGGAATGCTGATACCAGTGTGGGTGCTAATGAAAGTCAAGAACCAACTGTACGGAACATTCCACCTTATGATCCTGCAGCAGATACATCAGAAAGGGCATATCTTTTTGATGAGATTATTCCAAAGAGTATAAGGCCGCACCTTGTGGATATTATAGGACATTTTGAGTCAGGAGAAATTTCTTCAAAAGGCTATGGGAGTTTTGTGTCAAATCGTGTTAATAAATTACAGGAGCTTCAGGGTGAAGATAAGGAGAGGCTTGCTTGGATACTGTCCTACATCACACATCTCCTATCCCTGCTGGCACGGAACAGCTCCATGTCCAAGCGGCACAGAAAGGAAAACCAGGCTACCAGTGGACCAGTGATCCCACAGTATGTATATCGTAAGATGGTGCTAATGTTTACGGAACCAGGATCTAGCGCCTTGTCAACAGAGAAACACGAGCTTCTGATCAACTACATTCTCGTACTCACGCTCTACGCTGATGACTTCAGATCCGACCCTAAGGATATATGTGAAGACCTGAAAATGACCCGCCAGATGATTAAACCATATTATGACCAGCTGGGATGCAAATCTTCGTCGGCCGGTGCATTTAAATCCTCTGTAATGACACTTCCAGCTCCCCTCAAGTTCCCAAAAGAAGCTACAAGGAGAAAGCGACGAAGGTTCTGATCATCTCAGAAGGATCTTTAGCCTTATCTGAATGTGGGTGTGATAGGAAAAGATTGTTCGAAGTTGGGCCTGAGTTTATGCATGCTCAGCCCAGCCTTCCGAATTACTGAAACATGTGGAATATGGCTTTTGCCTTGTTTTTGTTTCCCCTTGTCACCTGGAGTTGCTGTCACAAAGGCAGAATATTGTTTATGTATTGATGACATTTTTTAACCCTTTTTTTTTCTCATCTTGCCTACCAGAATTTACATTGAAG] [+] EMBL OSS14687A [ AGACAATTGGCGACCTCGAAAAGCCCTAGAGCCGTCTCCAATGGCGGACCACCAGCCCGCCGCCTCCTCCCCCAAGAGGAAGAAGAAGCACTCCAAGAAGCCGGAGGACAGCAATGCCACCGTCGACGACTCCCTCGCCGCCGCCGCCTCCCCCTCCCCCAAGAAGAAGGAGAAGCACTCCAAGAAGAAGCGGGAAGCCATCGATGCCACCATGGCCGCTGCCTCCCCCAAGAAGAAGGAGAAGAAGCACTCCAAGAAGCAGGAAGACACCAATNTCCCCGAGAAGAAGCGGGAAGTCGTCCATGTCACCGTGGACGCCTCCCTNACCGGCGCCG CGNCGC ] [+] EMBL OSS14267A [ AGACAATTGGCNACNTCGAAAAGCCCTAGAGCCGTCTCCAATNGCNGACCACCAGCCCTCCGCCTCCTCCCCCAAGAGGAAGAAGAAGCACTCCAAGAAGCCGGA GACAGCAATNCCACCGTCNACGACTCCCTCGCCNCCGCCTCNTCCCCNTNCCCCAAGAAGAAGGAGAAGCACTCCAAGAAGAAGCGGGAAGCCATCGATNCCACCATTGCCGCTNCCTCCCCCAAGAAGAAGGAGAAGAAGCACTTCAAGAAGCAGGAAGACAn ] [+] EMBL CA999660 [ AGGTACAGGATATTACCAAGGCGTTTGGAACCCAGAAAGACAAGGCCAAGGATATTAAGTGGCAGTCATTAAATGAACAAAGGAATGATCCTTCTGCTTTTATGGACCTTGACCTTGGGAATGCTGATACCAGTGTGGGTGCTAATGAAAGTCAAGAACCAACTGTACGGAACATTCCACCTTATGATCCTGCAGCAGATACATCAGAAAGGGCATA ] [+] EMBL CB000508 [ GTGCTAATGAAAGTCAAGAACCAACTGTACGGAACATTCCACCTTATGATCCTGCAGCAGATACATCAGAAAGGGCATATCTTTTTGATGAGATTATTCCAAAGAGTATAAGGCCGCACCTTGTGGATATTATAGGACATTTTGAGTCAGGAGAAATTTCTTCAAAAGGCTATGGGAGTTTTGTGTCAAATCGTGTTAATAAATTACAGGAGCTTCAGGGTGAAGATAAGGAGAGGCTTGCTTGGATACTGTCCTACATCACACATCTCCTGTCCCTGCTGGCACGGAACAGCTCCATGTCCAAGCGGCACAGAAAGGAAAACCAGGCTACCAGTGGACCAGTGATCCCACAGTATGTATATCGTAAGATGGTGCTAATGTTTACGGAACCAGGATCTAGCGCCTTGTCAACAGAGAAACACGAGCTTCTGATCAACTACATTCTCGTACTCACGCTCTACGCTGATGACTTCAGATCCGACCCTAAGGATATATGTGAAGACCTGAAAATGACCCGCCAGATGATTAAACCATATTATGACCAGCTGGGATGCAAATCTTCGTCGGCCGGTGCATTTAAATCCTCTGTAATGACACTTCCAGCTCCCCTCAAGTTCCCAAAAGAAGCTACAA ] [+] EMBL AU088617 [ CCGAAAAGAAGCTACAAGGAGAAAGCGACGAAGGTTCTGATCATCTCAGAAGGATCTTTAGCCTTATCTGAATGTGGGTGTGATAGGAAAAGATTGTTCGAAGTTGGGCCTGAGTTTATGCATGCTCAGCCCAGCCTTCCGAATTACTGAAACATGTGGAATATGGCTTTTGCCTTGTTTTTGTTTCCCCTTGTCACCTGGAGTTGCTGTCACAAAGGCAGAATATTGTTTATGTATTGATGACATTTTTTAACCCTTTTTTTTTCTCA ] consensusID : consensus_10600#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 689 fasta sequence [TNAAATTACAGGAGCTTCAGGGTGAAGTTAAGGAGAGGCTTGCTTGGATACTGTCCTACATCACACATCTCCTATCCCTGCTGGCACGGAACAGCTCCATGTCCAAGCGGCACAGAAAGGAAAACCAGGCTACCAGTGGACCAGTGATCCCACAGTATGTATATCGTAAGATGGTGCTAATGTTTACGGAACCAGGATCTNGCGCCTTGTCAACAGAGAAACACGAGCTTCTGATCAACTACATTCTCGTACTCACGCTCTACGCTGATGACTTCAGATCCGACCCTAAGGATATATGTGAAGACCTGAAAATGACCCGCCAGATGATTAAACCATATTATGACCAGCTGGGATGCAAATCTTCGTCGGCCGGTGCATTTAAATCCTCTGTAATGANACTTCCAGCTCCCCTNNAGTTCCCAAAAGAAGCTACAAGGAGAAAGCGACGAAGGTTCTGATCATCTCAGAAGGATCTTTAGCCTTATCTGAATGTGGGTGTGATAGGAAAAGATTGTTCGAAGTTGGGCCTGAGTTTATGCATGCTCAGCCCAGCCTTCCGAATTACTGAAACATGTGGAATATGGCTTTTGCCTTGTTTTTGTTTCCCCTTGTCACCTGGAGTTGCTGTCACAAAGGCAGAATATTGTTTATGTATTGATGANATTTTTTAACCCAAAAAAAAAAAAAAA] [+] EMBL AU096672 [TNAAATTACAGGAGCTTCAGGGTGAAGTTAAGGAGAGGCTTGCTTGGATACTGTCCTACATCACACATCTCCTATCCCTGCTGGCACGGAACAGCTCCATGTCCAAGCGGCACAGAAAGGAAAACCAGGCTACCAGTGGACCAGTGATCCCACAGTATGTATATCGTAAGATGGTGCTAATGTTTACGGAACCAGGATCTNGCGCCTTGTCAACAGAGAAACACGAGCTTCTGATCAACTACATTCTCGTACTCACGCTCTACGCTGATGACTTCAGATCCGACCCTAAGGATATATGTGAAGACCTGAAAATGACCCGCCAGATGATTAAACCATATTATGACCAGCTGGGATGCAAATCTTCGTCGGCCGGTGCATTTAAATCCTCTGTAATGANACTTCCAGCTCCCCTNNAGTTCCCAAAAGAAGCTACAAGGAGAAAGCGACGAAGGTTCTGATCATCTCAGAAGGATCTTTAGCCTTATCTGAATGTGGGTGTGATAGGAAAAGATTGTTCGAAGTTGGGCCTGAGTTTATGCATGCTCAGCCCAGCCTTCCGAATTACTGAAACATGTGGAATATGGCTTTTGCCTTGTTTTTGTTTCCCCTTGTCACCTGGAGTTGCTGTCACAAAGGCAGAATATTGTTTATGTATTGATGANATTTTTTAACCCAAAAAAAAAAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_10600#0 AACCCTAGACAATTGGCGACCTCGAAAAGCCCTAGAGCCGTCTCCAATGGCGGACCACCA 60 consensus_10600#1 ------------------------------------------------------------ consensus_10600#0 GCCCGCCGCCTCCTCCCCCAAGAGGAAGAAGAAGCACTCCAAGAAGCCGGAGGACAGCAA 120 consensus_10600#1 ------------------------------------------------------------ consensus_10600#0 TGCCACCGTCGACGACTCCCTCGCCGCCGCCGCCTCCCCCTCCCCCAAGAAGAAGGAGAA 180 consensus_10600#1 ------------------------------------------------------------ consensus_10600#0 GCACTCCAAGAAGAAGCGGGAAGCCATCGATGCCACCATGGCCGCTGCCTCCCCCAAGAA 240 consensus_10600#1 ------------------------------------------------------------ consensus_10600#0 GAAGGAGAAGAAGCACTCCAAGAAGCAGGAAGACACCAATGTCCCCGAGAAGAAGCGGGA 300 consensus_10600#1 ------------------------------------------------------------ consensus_10600#0 AGTCGTGCATGTCACCGTGGACGCCTCCCTCACCGGCGCCGCCGCCGCGGGCGCAGCCCC 360 consensus_10600#1 ------------------------------------------------------------ consensus_10600#0 CGTCGTCGCCTACTTCCCGACCGGCTACGACCCCCTGGCCGCCGGCGGCGGCAGGAAGGG 420 consensus_10600#1 ------------------------------------------------------------ consensus_10600#0 TAGAGAGGCCCCCCGCACGAGGCTGTTCCGCCACACGAAGCACCCATCCCGCATCGAGCT 480 consensus_10600#1 ------------------------------------------------------------ consensus_10600#0 CGTGGTCGGCGCCGCCACTGGTGGCGGCGGAGGGCCGGACTTCGTCGGGCGGAGCTACGC 540 consensus_10600#1 ------------------------------------------------------------ consensus_10600#0 CGGCGAGGCCGTGCTGCCGCAGCTCACTGGCTACGCGCTCGGTGTCCTCGACAAGGCCTC 600 consensus_10600#1 ------------------------------------------------------------ consensus_10600#0 CGGCACCCTCAAGGTCGTCCCCATCGCCGCCAACAAGAAACTGGCGCATTCGCAGCACTC 660 consensus_10600#1 ------------------------------------------------------------ consensus_10600#0 TGGGGCAGTAGGGGAGGCAGTATCATCAGCAGGAGATGCTGACTTGAAGGTACAGGATAT 720 consensus_10600#1 ------------------------------------------------------------ consensus_10600#0 TACCAAGGCGTTTGGAACCCAGAAAGACAAGGCCAAGGATATTAAGTGGCAGTCATTAAA 780 consensus_10600#1 ------------------------------------------------------------ consensus_10600#0 TGAACAAAGGAATGATCCTTCTGCTTTTATGGACCTTGACCTTGGGAATGCTGATACCAG 840 consensus_10600#1 ------------------------------------------------------------ consensus_10600#0 TGTGGGTGCTAATGAAAGTCAAGAACCAACTGTACGGAACATTCCACCTTATGATCCTGC 900 consensus_10600#1 ------------------------------------------------------------ consensus_10600#0 AGCAGATACATCAGAAAGGGCATATCTTTTTGATGAGATTATTCCAAAGAGTATAAGGCC 960 consensus_10600#1 ------------------------------------------------------------ consensus_10600#0 GCACCTTGTGGATATTATAGGACATTTTGAGTCAGGAGAAATTTCTTCAAAAGGCTATGG 1020 consensus_10600#1 ------------------------------------------------------------ consensus_10600#0 GAGTTTTGTGTCAAATCGTGTTAATAAATTACAGGAGCTTCAGGGTGAAGATAAGGAGAG 1080 consensus_10600#1 -----------------------TNAAATTACAGGAGCTTCAGGGTGAAGTTAAGGAGAG 37 ************************* ********* consensus_10600#0 GCTTGCTTGGATACTGTCCTACATCACACATCTCCTATCCCTGCTGGCACGGAACAGCTC 1140 consensus_10600#1 GCTTGCTTGGATACTGTCCTACATCACACATCTCCTATCCCTGCTGGCACGGAACAGCTC 97 ************************************************************ consensus_10600#0 CATGTCCAAGCGGCACAGAAAGGAAAACCAGGCTACCAGTGGACCAGTGATCCCACAGTA 1200 consensus_10600#1 CATGTCCAAGCGGCACAGAAAGGAAAACCAGGCTACCAGTGGACCAGTGATCCCACAGTA 157 ************************************************************ consensus_10600#0 TGTATATCGTAAGATGGTGCTAATGTTTACGGAACCAGGATCTAGCGCCTTGTCAACAGA 1260 consensus_10600#1 TGTATATCGTAAGATGGTGCTAATGTTTACGGAACCAGGATCTNGCGCCTTGTCAACAGA 217 ******************************************* **************** consensus_10600#0 GAAACACGAGCTTCTGATCAACTACATTCTCGTACTCACGCTCTACGCTGATGACTTCAG 1320 consensus_10600#1 GAAACACGAGCTTCTGATCAACTACATTCTCGTACTCACGCTCTACGCTGATGACTTCAG 277 ************************************************************ consensus_10600#0 ATCCGACCCTAAGGATATATGTGAAGACCTGAAAATGACCCGCCAGATGATTAAACCATA 1380 consensus_10600#1 ATCCGACCCTAAGGATATATGTGAAGACCTGAAAATGACCCGCCAGATGATTAAACCATA 337 ************************************************************ consensus_10600#0 TTATGACCAGCTGGGATGCAAATCTTCGTCGGCCGGTGCATTTAAATCCTCTGTAATGAC 1440 consensus_10600#1 TTATGACCAGCTGGGATGCAAATCTTCGTCGGCCGGTGCATTTAAATCCTCTGTAATGAN 397 *********************************************************** consensus_10600#0 ACTTCCAGCTCCCCTCAAGTTCCCAAAAGAAGCTACAAGGAGAAAGCGACGAAGGTTCTG 1500 consensus_10600#1 ACTTCCAGCTCCCCTNNAGTTCCCAAAAGAAGCTACAAGGAGAAAGCGACGAAGGTTCTG 457 *************** ******************************************* consensus_10600#0 ATCATCTCAGAAGGATCTTTAGCCTTATCTGAATGTGGGTGTGATAGGAAAAGATTGTTC 1560 consensus_10600#1 ATCATCTCAGAAGGATCTTTAGCCTTATCTGAATGTGGGTGTGATAGGAAAAGATTGTTC 517 ************************************************************ consensus_10600#0 GAAGTTGGGCCTGAGTTTATGCATGCTCAGCCCAGCCTTCCGAATTACTGAAACATGTGG 1620 consensus_10600#1 GAAGTTGGGCCTGAGTTTATGCATGCTCAGCCCAGCCTTCCGAATTACTGAAACATGTGG 577 ************************************************************ consensus_10600#0 AATATGGCTTTTGCCTTGTTTTTGTTTCCCCTTGTCACCTGGAGTTGCTGTCACAAAGGC 1680 consensus_10600#1 AATATGGCTTTTGCCTTGTTTTTGTTTCCCCTTGTCACCTGGAGTTGCTGTCACAAAGGC 637 ************************************************************ consensus_10600#0 AGAATATTGTTTATGTATTGATGACATTTTTTAACCCTTTTTTTTTCTCATCTTGCCTAC 1740 consensus_10600#1 AGAATATTGTTTATGTATTGATGANATTTTTTAACCCAAAAAAAAAAAAAAA-------- 689 ************************ ************ * consensus_10600#0 CAGAATTTACATTGAAG 1757 consensus_10600#1 ----------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||