These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_10601#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 1046 fasta sequence [AACAATGAGGTGTCATCTCACTTTATACGGTTGCCAAAAGGTAGCACTATGTCTGATTTGATTGAGGACATGAAATCCAAGGTTGAGTTATCTTATAGTGATGCTGAATTCCGGTTATTTGAGGTCTACAAAAACAAGATACGCAAGGTGTATCAACCTTCGGAGAAAATTTCAGTTAATGAATTCAATGGACTGTTATGNTGTTGAAGAGGTTCCTGAAGAAGAGAAAAATGCTGGTGTGCGAGACCGTTTGGTTCATGTCTGTCACTTCATCATAGAAAAACAGCACATTGATTACTACGGAGAACCTTTCTTCTTCCTTATCCGTGATGGTGAGACATTATCAGATATCAAAGTGCGTATTCAGAAGAAACTTCTGGTTTCTGATGAGCAGTTTGCGAAGTGGAAATTTGCTTATATTGCTCAC-AATCGCCTGGCTGGTGAATACTTTCAAAGATTCAGATATCGTATTGAGCCGATTCCAGAAAGATTTTTATGGACCATGGGAACAATGCCTAGGACTTGAGCACTCAGACGTCACCCCAAAAAGGTCATGCTTGTCCAATCAGAACCGCAATTCTTTCGATAAGGCTGTGAAGATTTTCAACTAGAGGTGGTTAAATTATCACATTTATGTGATGTATCCAGAGCTCTCACCTGCCGTAGTACAAGCTAATGAGATCATCAAGAGCACCTTAATTTATTCCTCACCCGGCAAAGTTCATTGTCTTCTTCTAGACATATAGTCATTATTTTGGTCTGCGCAAGAAGGCGTTGCACAGTCTGGTGTGGTCGGTTGAAAGAAATTTTCCATCTGGTTGGGTGTACAGGGTTCTTTAATGTTGGAATTCTTAGTTGTTTTTAGGTAGATTCTGAAAGCTGTATATTGGGCATGGGCTGATCATCCCAGTGGTTTTTGTTTCACCATGGGGTTTTGTGGGATAACTGTTGATGCCCACATAATATGATCGAAATCTATTTCAGGTTTAAATCGAAAGGGGAATCTGTTTTCGTTTGTAACGTTAAACTACACATTTTGAGAAAAA] [+] EMBL CF331077 [AACAATGAGGTGTCATCTCACTTTATACGGTTGCCAAAAGGTAGCACTATGTCTGATTTGATTGAGGACATGAAATCCAAGGTTGAGTTATCTTATAGTGATGCTGAATTCCGGTTATTTGAGGTCTACAAAAACAAGATACGCAAGGTGTATCAACCTTCGGAGAAAATTTCAGTTAATGAATTCAATGGACTGTTATGNTGTTGAAGAGGTTCCTGAAGAAGAGAAAAATGCTGGTGTGCGAGACCGTTTGGTTCATGTCTGTCACTTCATCATAGAAAAACAGCACATTGATTACTACGGAGAACCTTTCTTCTTCCTTATCCGTGATGGTGAGACATTATCAGATATCAAAGTGCGTATTCAGAAGAAACTTCTGGTTTCTGATGAGCAGTTTGCGAAGTGGAAATTTGCTTATATTGCTCAC AATCGCCTGGCTGGTGAATACTTTC AAGATTCAGATATCGTATTGAGCCGATTCCAGAAAGATTTTTATGGACCATGGGAACAATGCCTAGGACTTGAGCACTCAGACGTCACCCCAAAAAGGTCATGCTTGTCCAATCAGAACCG ] [+] EMBL C27385 [ GGTTGAGTTATCTTATAGTGATGCTGAATTCCGGTTATTTGAGGTCTACAAAAACAAGATACGCAAGGTGTATCAACCTTCGGAGAAAATTTCAGTTAATGAATTCAATGGACTGTTATG TGTTGAAGAGGTTCCTGAAGAAGAGAAAAATGCTGGTGTGCGAGACCGNTTNGTTCATGTCTGTCACTTCATCATAGANAAACAGCACATTGATTACTACGGAGAACCTTTCTTCTn ] [+] EMBL AU100815 [ GCTTATATTGCTCACAAATCGCCTGGCTGGTGAATACTTTCAAAGATTCAGATATCGTATTGANCCGATTCCAGAAAGATGTTTATGGACCATGGGNACAATGCCTAGGACTTGAGCACTCAGNCGTCACCCCAAAAAGGTCATGCTTGTCCAATCAGAACCGCAATTCTTTCGATAAGGCTGTGAAGATTTTCAACTAGAGGTGGTTAAATTATCACATTTATGTGATGTATCCAGAGCTCTCACCTGCCGTAGTACAAGCTAATGAGATCATCAAGAGCACCTTAATTTATTCCTCACCCGGCAAAGTTCATTGTCTTCTTCTAGACATATAGTCATTATTTTGGTCTGCGCAAGAAGGCGTTGCACAGTCTGGTGTGGTCGGTTGAAAGAAATTTTCCATCTGGTTGGGTGTACAGGGTTCTTTAATGTTGGAATTCTTAGTTGTTTTTAGGTAGATTCTGAAAGCTGTATATTGGGCATGGGCTGATCATCCCAGTGGTTTTTGTTTCACCATGGGGTTTTGTGGGATAACTGTTGATGCCCACATAATATGATCGAAATCTATTTCAGGTTTAAATCGAAAGGGGAATCTGTTTTCGTTTGTAACGTTAAACTACACATTTTGAGAAAAA] [-] EMBL CF331078 [ cAAGATTCAGATATCGTATTGAGCCGATTCCAGAAAGATTTTTATGGACCATGGGAACAATGCNTAGGACTTGAGCACTCAGACGTCACCCCAAAAAGGTCATGCTTGTCCAATCAGAACCGCAATTCTTTCGATAAGGCTGTGAAGATTTTCAACTAGAGGTGGTTAAATTATCACATTTATGTGATGTATCCAGAGCTCTCACCTGCCGTAGTACAAGCTAATGAGATCATCAAGAGCACCTTAATTTATTCCTCACCCGGCAAAGTTCATTGTCTTCTTCTAGACATATAGTCATTATTTTGGTCTGCGCAAGAAGGCGTTGCACAGTCTGGTGTGGTCGGTTGAAAGAAATTTTCCATCTGGTTGGGTGTACAGGGTTCTAAAATGTTGGAATTCTTAGTTGTTTTTAGGTAGATTCTGAAAGCTGTATATTGGGCATGGGCTGATCATCCCAGTGGTTTTTGTTTCACCATGGGGTTTTGTGGGATAACTGTTGATGCCCACATAATATGATCGAAATCTATTTCAGGTTTAAAaaa ] [+] EMBL CF332060 [ AAAAGGTCATGCTTGTCCAATCAGAACCGCAATTCTTTCGATAAGGCTGTGAAGATTTTCAACTAGAGGTGGTTAAATTATCACATTTATGTGATGTATCCAGAGCTCTCACCTGCCGTAGTACAAGCTAATGAGATCATCAAGAGCACCTTAATTTATTCCTCACCCGGCAAAGTTCATTGTCTTCTTCTAGACATATAGTCATTATTTTGGTCTGCGCAAGAAGGCGTTGCACAGTCTGGTGTGGTCGGTTGAAAGAAATTTTCCATCTGGTTGGGTGTACAGGGTTCTTTAATGTTGGAATTCTTAGTTGTTTTTAGGTAGATTCTGAAAGCTGTATATTGGGCATGGGCTGATCATCCCAGTGGTTTTTGTTTCACCATGGGGTTTTGTGGGATAACTGTTGATGCCCACATAATATGATCGAAATCTATTTCAGGTTTAAATCG ] consensusID : consensus_10601#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 439 fasta sequence [TCCANGAGCTCTCACCTGCCGTAGTACAAGCTAATGAGATCATCAAGAGCNCCTTAATTTATTCCTCACCCCGGCCAAGTTCATTGTCTTCTTCTAGACATGTATAGTCATTATTTTGGTCTGCGCCNAGAAGGCGTTGCACCACGTCTGGTGTGGTCGGTTGAAAGAAATTTTCCACTCTGGTTGGGTGTACCACGGGTTCTTTAATGTTGGAATTCTTAGTTGTTTTTAGGTAGATTCTGAAAGCTGTATATTGGGCACTGGGCTGATCATCCCCGTGGTTTTTGTTTCACCCCTGGGGTTTTGTGGGATAACTGTTGATGCCCACATAATATGATCGAAATCTATTTCAGGTTTAAATCGAAAGGGGAATCTGTTTTCGTTTGTAACGTTTTAGTATAAATATATTCTTTCGCAAACTACACACTTTTGAGAAAAA] [+] EMBL BM421576 [TCCANGAGCTCTCACCTGCCGTAGTACAAGCTAATGAGATCATCAAGAGCNCCTTAATTTATTCCTCACCCCGGCCAAGTTCATTGTCTTCTTCTAGACATGTATAGTCATTATTTTGGTCTGCGCCNAGAAGGCGTTGCACCACGTCTGGTGTGGTCGGTTGAAAGAAATTTTCCACTCTGGTTGGGTGTACCACGGGTTCTTTAATGTTGGAATTCTTAGTTGTTTTTAGGTAGATTCTGAAAGCTGTATATTGGGCACTGGGCTGATCATCCCCGTGGTTTTTGTTTCACCCCTGGGGTTTTGTGGGATAACTGTTGATGCCCACATAATATGATCGAAATCTATTTCAGGTTTAAATCGAAAGGGGAATCTGTTTTCGTTTGTAACGTTTTAGTATAAA ] [+] EMBL BI808038 [ AATGTTGGAATTCTTAGTTGTTTTTAGGTAGATTCTGAAAGCTGTATATTGGGCA TGGGCTGATCATCCCAGTGGTTTTTGTTTCA CCATGGGGTTTTGTGGGATAACTGTTGATGCCCACATAATATGATCGAAATCTATTTCAGGTTTAAATCGAAAGGGGAATCTGTTTTCGTTTGTAACGTTTTAGTATAATTATATTCTTTCGCAAACTACACACTTTTGAGAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_10601#0 AACAATGAGGTGTCATCTCACTTTATACGGTTGCCAAAAGGTAGCACTATGTCTGATTTG 60 consensus_10601#1 ------------------------------------------------------------ consensus_10601#0 ATTGAGGACATGAAATCCAAGGTTGAGTTATCTTATAGTGATGCTGAATTCCGGTTATTT 120 consensus_10601#1 ------------------------------------------------------------ consensus_10601#0 GAGGTCTACAAAAACAAGATACGCAAGGTGTATCAACCTTCGGAGAAAATTTCAGTTAAT 180 consensus_10601#1 ------------------------------------------------------------ consensus_10601#0 GAATTCAATGGACTGTTATGNTGTTGAAGAGGTTCCTGAAGAAGAGAAAAATGCTGGTGT 240 consensus_10601#1 ------------------------------------------------------------ consensus_10601#0 GCGAGACCGTTTGGTTCATGTCTGTCACTTCATCATAGAAAAACAGCACATTGATTACTA 300 consensus_10601#1 ------------------------------------------------------------ consensus_10601#0 CGGAGAACCTTTCTTCTTCCTTATCCGTGATGGTGAGACATTATCAGATATCAAAGTGCG 360 consensus_10601#1 ------------------------------------------------------------ consensus_10601#0 TATTCAGAAGAAACTTCTGGTTTCTGATGAGCAGTTTGCGAAGTGGAAATTTGCTTATAT 420 consensus_10601#1 ------------------------------------------------------------ consensus_10601#0 TGCTCACAATCGCCTGGCTGGTGAATACTTTCAAAGATTCAGATATCGTATTGAGCCGAT 480 consensus_10601#1 ------------------------------------------------------------ consensus_10601#0 TCCAGAAAGATTTTTATGGACCATGGGAACAATGCCTAGGACTTGAGCACTCAGACGTCA 540 consensus_10601#1 ------------------------------------------------------------ consensus_10601#0 CCCCAAAAAGGTCATGCTTGTCCAATCAGAACCGCAATTCTTTCGATAAGGCTGTGAAGA 600 consensus_10601#1 ------------------------------------------------------------ consensus_10601#0 TTTTCAACTAGAGGTGGTTAAATTATCACATTTATGTGATGTATCCAGAGCTCTCACCTG 660 consensus_10601#1 ------------------------------------------TCCANGAGCTCTCACCTG 18 * ************* consensus_10601#0 CCGTAGTACAAGCTAATGAGATCATCAAGAGCACCTTAATTTATTCCTCACCC-GGCAAA 719 consensus_10601#1 CCGTAGTACAAGCTAATGAGATCATCAAGAGCNCCTTAATTTATTCCTCACCCCGGCCAA 78 ******************************** ******************** *** ** consensus_10601#0 GTTCATTGTCTTCTTCTAGACAT--ATAGTCATTATTTTGGTCTGCGC-AAGAAGGCGTT 776 consensus_10601#1 GTTCATTGTCTTCTTCTAGACATGTATAGTCATTATTTTGGTCTGCGCCNAGAAGGCGTT 138 *********************** *********************** ********** consensus_10601#0 GCACA--GTCTGGTGTGGTCGGTTGAAAGAAATTTTCCA-TCTGGTTGGGTGTACA--GG 831 consensus_10601#1 GCACCACGTCTGGTGTGGTCGGTTGAAAGAAATTTTCCACTCTGGTTGGGTGTACCACGG 198 **** ******************************** *************** ** consensus_10601#0 GTTCTTTAATGTTGGAATTCTTAGTTGTTTTTAGGTAGATTCTGAAAGCTGTATATTGGG 891 consensus_10601#1 GTTCTTTAATGTTGGAATTCTTAGTTGTTTTTAGGTAGATTCTGAAAGCTGTATATTGGG 258 ************************************************************ consensus_10601#0 CA-TGGGCTGATCATCCCAGTGGTTTTTGTTTCACCA-TGGGGTTTTGTGGGATAACTGT 949 consensus_10601#1 CACTGGGCTGATCATCCCCGTGGTTTTTGTTTCACCCCTGGGGTTTTGTGGGATAACTGT 318 ** *************** ***************** ********************** consensus_10601#0 TGATGCCCACATAATATGATCGAAATCTATTTCAGGTTTAAATCGAAAGGGGAATCTGTT 1009 consensus_10601#1 TGATGCCCACATAATATGATCGAAATCTATTTCAGGTTTAAATCGAAAGGGGAATCTGTT 378 ************************************************************ consensus_10601#0 TTCGTTTGTAACGTT-----------------------AAACTACACA-TTTTGAGAAAA 1045 consensus_10601#1 TTCGTTTGTAACGTTTTAGTATAAATATATTCTTTCGCAAACTACACACTTTTGAGAAAA 438 *************** ********** *********** consensus_10601#0 A 1046 consensus_10601#1 A 439 * |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||