Home
Who am I
Technology
EST Assembly
Contact

These datas are free for academic use only, please contact me for any other use.

Oryza sativa
cluster # 10606 cluster # 10606       Sequences # 7       consensus # 3


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_10606#0 length = 1802 sequences # 5  
consensus_10606#1 length = 813 sequences # 1  
consensus_10606#2 length = 386 sequences # 1  

consensusID : consensus_10606#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 5
consensus length = 1802
fasta sequence
                              [GCACAGGCAGCATCCCCTCCCCGTCCGCTGCGCGAGAGCGACTGCGCCGGCGCCGGCGCCGGCGCCGCCTCCAAGTCGATCTCCCTCGGCCTCGACTACCGTCTCCTCGCGAGTTCACCCGCCACCTGCGCCGGTCTCCACCTATCCTGCTGTTTCCGGATTTAATATTAAGGAAAGGGCGATCATGAGCCTCCATCGATTTGTGAATCTACTAATGGAGAACGGTGAGAAGGGTGTCTACTCACTGCGTCGTCTCAACCTGTCTCGACACCCATTGTTCTACTCATCAACAGAGGTGTCAGCTGTCCAAGATCTGCCAGCGCTAGGAGAAGAAGGATATGTATATTACCCGTTCAAGGGTTATGGCGAGAGTAGCAAACAGGCTTTTGAGGTGGAGAGCATTCGGCTTCCATCACCAACTGTCAGCTTGCTACCGACTCCATCCTCAACTGATAAAATGTGCAAGTTTGATTGTTTCTCTGTCTCGGAGAGCAAGATCATATGCACAGACCAGGCTGCACGCACCTTCCTCTATGACCTTGATGAGCATTGCGTCACAAGCATGCCCAGCCTCCATGCTCCGAAGTATTCCCCCTTCTCAGTCTCGGTTGCAATCCAAGGCGAAAAAGGAGAAGGGGAA---AGCAGCAGCAGCAGCAGCCGCCGCCTCTATGTCATGGAGGAAGTCCTCTTGCCAGAGAGGGGCACGGGGAGTAGCTACCAGTTCGAGGCCTTTGACTATCGCAAGCCAGGACCAGAATATTTGGTTAAGGCTTGGCACTGTGATCCACTGCCGCCACCGCCTTTTGTCCGTGACCCTCGCTACGTTCCCTCTCCAGTGAGTTCCTATGCAGTGGTGGGAAATTTCATCTGCATATCCACTAAGGGGATTGGGACGTACTGCTTTGACACGGTGAGCTGCAGCTGGAGTCATGCCGGTGACTGGATGCTGCCATTCTGCGGCAAGGGTGAGTATGTCCCTGAGCTCAAGCTTTGGTTTGGTGTGTCCGCCAAGAACAACTATGCCCCATGTGCTTCCGATCTCTCACCTGTTGTCAGAGCTGAGCCACCAAAACCTGGCTGCATTTGGGAGGATCTCAACCTTCCTGAGGATTGGCGTCCGTGCAGGATGTCTGACCTCGTCAATCTTGGCTCAGGAAGGTTTTGCATCATTAGGTTCTTCCAACCATCGGGTAACAGGGACTACATGAAAGACCAAATTGATCAGACCATTGCTGTCTTTAGTGGTGTGGAAGTGCTGCCTGATGACAACAAGGCTGCGGGCAATGGCAAAGGGAAAGGCAAACAGAATGCCAAGGGGCTCCGTATGATCAAACACAAGTCCAGAAAATGCACATTCATCGAACAAATCAACAACGTCGAGTCGGTGCTCTAAAGCTTGGGTGATTAGCTCTTGAAATCTCCTGCCTTCTGCTACTGCTTTTAGTTGGCTGCAATGGACTAGTGGAACTTGGCTAGGTGGTGTTCCTGCTGACTTTAAGGGCCTGTTTGGGGGAGCTGGAGAGAGCTGGAGATTCTGAGAAGCTAGCTGGAGATTCTGAGAAGCTGAGGAGGGTCTGTTTGGGGGAGCTTCTTTAGGTTTGTTGGCTGGTGAGCTGAGAGGCTGAATTGTCTGAAATACCCCTGAGGTAGATGGTGGTCCTGATCTCTTGTTAATTATTTGGTTGATAGATTACACCCTTCCATATATAATTTGTGTGCATATAATTTTGTAAATATTCATTTTTCATAATGATAGGAATAAAAAAATGTGTTCATTTTTAAGGCAATGAGAAAGGTTAAAT]

[+] EMBL CF331343             [GCACAGGCAGCATCCCCTCCCCGTCCGCTGCGCGAGAGCGACTGCGCCGGCGCCGGCGCCGGCGCCGCCTCCAAGTCGATCTCCCTCGGCCTCGACTACCGTCTCCTCGCGAGTTCACCCGCCACCTGCGCCGGTCTCCACCTATCCTGCTGTTTCCGGATTTAATATTAAGGAAAGGGCGATCATGAGCCTCCATCGATTTGTGAATCTACTAATGGAGAACGGTGAGAAGGGTGTCTACTCACTGCGTCGTCTCAACCTGTCTCGACACCCATTGTTCTACTCATCAACAGAGGTGTCAGCTGTCCAAGATCTGCCAGCGCTAGGAGAAGAAGGATATGTATATTACCCGTTCAAGGGTTATGGCGAGAGTAGCAAA                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  ]
[+] EMBL AK102952             [     GGCAGCATCCCCTCCCCGTCCGCTGCGCGAGAGCGACTGCGCCGGCGCCGGCGCCGGCGCCGCCTCCAAGTCGATCTCCCTCGGCCTCGACTACCGTCTCCTCGCGAGTTCACCCGCCACCTGCGCCGGTCTCCACCTATCCTGCTGTTTCCGGATTTAATATTAAGGAAAGGGCGATCATGAGCCTCCATCGATTTGTGAATCTACTAATGGAGAACGGTGAGAAGGGTGTCTACTCACTGCGTCGTCTCAACCTGTCTCGACACCCATTGTTCTACTCATCAACAGAGGTGTCAGCTGTCCAAGATCTGCCAGCGCTAGGAGAAGAAGG  ATGTATATTACCCGTTCAAGGGTTATGGCGAGAGTAGCAAACAGGCTTTTGAGGTGGAGAGCATTCGGCTTCCATCACCAACTGTCAGCTTGCTACCGACTCCATCCTCAACTGATAAAATGTGCAAGTTTGATTGTTTCTCTGTCTCGGAGAGCAAGATCATATGCACAGACCAGGCTGCACGCACCTTCCTCTATGACCTTGATGAGCATTGCGTCACAAGCATGCCCAGCCTCCATGCTCCGAAGTATTCCCCCTTCTCAGTCTCGGTTGCAATCCAAGGCGAAAAAGGAGAAGGGGAAAGCAGCAGCAGCAGCAGCAGCCGCCGCCTCTATGTCATGGAGGAAGTCCTCTTGCCAGAGAGGGGCACGGGGAGTAGCTACCAGTTCGAGGCCTTTGACTATCGCAAGCCAGGACCAGAATATTTGGTTAAGGCTTGGCACTGTGATCCACTGCCGCCACCGCCTTTTGTCCGTGACCCTCGCTACGTTCCCTCTCCAGTGAGTTCCTATGCAGTGGTGGGAAATTTCATCTGCATATCCACTAAGGGGATTGGGACGTACTGCTTTGACACGGTGAGCTGCAGCTGGAGTCATGCCGGTGACTGGATGCTGCCATTCTGCGGCAAGGGTGAGTATGTCCCTGAGCTCAAGCTTTGGTTTGGTGTGTCCGCCAAGAACAACTATGCCCCATGTGCTTCCGATCTCTCACCTGTTGTCAGAGCTGAGCCACCAAAACCTGGCTGCATTTGGGAGGATCTCAACCTTCCTGAGGATTGGCGTCCGTGCAGGATGTCTGACCTCGTCAATCTTGGCTCAGGAAGGTTTTGCATCATTAGGTTCTTCCAACCATCGGGTAACAGGGACTACATGAAAGACCAAATTGATCAGACCATTGCTGTCTTTAGTGGTGTGGAAGTGCTGCCTGATGACAACAAGGCTGCGGGCAATGGCAAAGGGAAAGGCAAACAGAATGCCAAGGGGCTCCGTATGATCAAACACAAGTCCAGAAAATGCACATTCATCGAACAAATCAACAACGTCGAGTCGGTGCTCTAAAGCTTGGGTGATTAGCTCTTGAAATCTCCTGCCTTCTGCTACTGCTTTTAGTTGGCTGCAATGGACTAGTGGAACTTGGCTAGGTGGTGTTCCTGCTGACTTTAAGGGCCTGTTTGGGGGAGCTGGAGAGAGCTGGAGATTCTGAGAAGCTAGCTGGAGATTCTGAGAAGCTGAGGAGGGTCTGTTTGGGGGAGCTTCTTTAGGTTTGTTGGCTGGTGAGCTGAGAGGCTGAATTGTCTGAAATACCCCTGAGGTAGATGGTGGTCCTGATCTCTTGTTAATTATTTGGTTGATAGATT                                                                                                              ]
[+] EMBL CB658895             [                  CCCCCTTTGCTGCGCGAGAGCGACTGCGCCGGCGCCGGCGCCGGCGCCGCCTCCAAGTCGATCTCCCTCGGCCTCGACTACCGTCTCCTCGCGAGTTCACCCGCCACCTGCGCCGGTCTCCACCTATCCTGCTGTTTCCGGATTTAATATTAAGGAAAGGGCGATCATGAGCCTCCATCGATTTGTGAATCTACTAATGGAGAACGGTGAGAAGGGTGTCTACTCACTGCGTCGTCTCAACCTGTCTCGACACCCATTGTTCTACTCATCAACAGAGGTGTCAGCTGTCCAAGATCTGCCAGCGCTAGGAGAAGAAGGATATGTATATTACCCGTTCAAGGGTTATGGCGAGAGTAGCAAACAGGCTTTTGAGGTGGAGAGCATTCGGCTTCCATCACCAACTGTCAGCTTGCTACCGACTCCATCCTCAACTGATAAAATGTGCAAGTTTGATTGTTTCTCTGTCTCGGAGAGCAAGATCATATGCACAGACCAGGCTGCACGCACCTTCCTCTATGACCTTGATGAGCATTGCGTCACAAGCATGCCCAGCCTCCATGCTCCGAAGTATTCCCCCTTCTCAGTCTCGGTTGCAATCCAAGGCGAAAAAGGAGAAGGGGAA   AGCAGCAGCAGCAGCAGCCGCCGCCTCTATGTCATGGAGGAAGTCCTCTTGCCAGAGAGGGGCACGGGGAGTAGCTACCAGTTCGAGGCCT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                               ]
[+] EMBL CB658896             [                  CCCCCCCTGCTGCGCGAGAGCGACTGCGCCGGCGCCGGCGCCGGCGCCGCCTCCAAGTCGATCTCCCTCGGCCTCGACTACCGTCTCCTCGCGAGTTCACCCGCCACCTGCGCCGGTCTCCACCTATCCTGCTGTTTCCGGATTTAATATTAAGGAAAGGGCGATCATGAGCCTCCATCGATTTGTGAATCTACTAATGGAGAACGGTGAGAAGGGTGTCTACTCACTGCGTCGTCTCAACCTGTCTCGACACCCATTGTTCTACTCATCAACAGAGGTGTCAGCTGTCCAAGATCTGCCAGCGCTAGGAGAAGAAGGATATGTATATTACCCGTTCAAGGGTTATGGCGAGAGTAGCAAACAGGCTTTTGAGGTGGAGAGCATTCGGCTTCCATCACCAACTGTCAGCTTGCTACCGACTCCATCCTCAACTGATAAAATGTGCAAGTTTGATTGTTTCTCTGTCTCGGAGAGCAAGATCATATGCACAGACCAGGCTGCACGCACCTTCCTCTATGACCTTGATGAGCATTGCGTCACAAGCATGCCCAGCCTCCATGCTCCGAAGTATTCCCCCTTCTCAGTCTCGGTTGCAATCCAAGGCGAANAAGGAGAAGGGGAA   AGCAGCAGCAGCAGCAGCCGCCGCCTCTATGTCATGGAGGAAGTCCTCTTGCCAGAGAGGGGCACGGGGAGTAGCTACCAGTTCCAGGC                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                 ]
[+] EMBL AK063902             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                   TCGAGTCGGTGCTCTAAAGCTTGGGTGATTAGCTCTTGAAATCTCCTGCCTTCTGCTACTGCTTTTAGTTGGCTGCAATGGACTAGTGGAACTTGGCTAGGTGGTGTTCCTGCTGACTTTAAGGGCCTGTTTGGGGGAGCTGGAGAGAGCTGGAGATTCTGAGAAGCTAGCTGGAGATTCTGAGAAGCTGAGGAGGGTCTGTTTGGGGGAGCTTCTTTAGGTTTGTTGGCTGGTGAGCTGAGAGGCTGAATTGTCTGAAATACCCCTGAGGTAGATGGTGGTCCTGATCTCTTGTTAATTATTTGGTTGATAGATTACACCCTTCCATATATAATTTGTGTGCATATAATTTTGTAAATATTCATTTTTCATAATGATAGGAATAAAAAAATGTGTTCATTTTTAAGGCAATGAGAAAGGTTAAAT]


>consensus_10606#0 GCACAGGCAGCATCCCCTCCCCGTCCGCTGCGCGAGAGCGACTGCGCCGGCGCCGGCGCC GGCGCCGCCTCCAAGTCGATCTCCCTCGGCCTCGACTACCGTCTCCTCGCGAGTTCACCC GCCACCTGCGCCGGTCTCCACCTATCCTGCTGTTTCCGGATTTAATATTAAGGAAAGGGC GATCATGAGCCTCCATCGATTTGTGAATCTACTAATGGAGAACGGTGAGAAGGGTGTCTA CTCACTGCGTCGTCTCAACCTGTCTCGACACCCATTGTTCTACTCATCAACAGAGGTGTC AGCTGTCCAAGATCTGCCAGCGCTAGGAGAAGAAGGATATGTATATTACCCGTTCAAGGG TTATGGCGAGAGTAGCAAACAGGCTTTTGAGGTGGAGAGCATTCGGCTTCCATCACCAAC TGTCAGCTTGCTACCGACTCCATCCTCAACTGATAAAATGTGCAAGTTTGATTGTTTCTC TGTCTCGGAGAGCAAGATCATATGCACAGACCAGGCTGCACGCACCTTCCTCTATGACCT TGATGAGCATTGCGTCACAAGCATGCCCAGCCTCCATGCTCCGAAGTATTCCCCCTTCTC AGTCTCGGTTGCAATCCAAGGCGAAAAAGGAGAAGGGGAAAGCAGCAGCAGCAGCAGCCG CCGCCTCTATGTCATGGAGGAAGTCCTCTTGCCAGAGAGGGGCACGGGGAGTAGCTACCA GTTCGAGGCCTTTGACTATCGCAAGCCAGGACCAGAATATTTGGTTAAGGCTTGGCACTG TGATCCACTGCCGCCACCGCCTTTTGTCCGTGACCCTCGCTACGTTCCCTCTCCAGTGAG TTCCTATGCAGTGGTGGGAAATTTCATCTGCATATCCACTAAGGGGATTGGGACGTACTG CTTTGACACGGTGAGCTGCAGCTGGAGTCATGCCGGTGACTGGATGCTGCCATTCTGCGG CAAGGGTGAGTATGTCCCTGAGCTCAAGCTTTGGTTTGGTGTGTCCGCCAAGAACAACTA TGCCCCATGTGCTTCCGATCTCTCACCTGTTGTCAGAGCTGAGCCACCAAAACCTGGCTG CATTTGGGAGGATCTCAACCTTCCTGAGGATTGGCGTCCGTGCAGGATGTCTGACCTCGT CAATCTTGGCTCAGGAAGGTTTTGCATCATTAGGTTCTTCCAACCATCGGGTAACAGGGA CTACATGAAAGACCAAATTGATCAGACCATTGCTGTCTTTAGTGGTGTGGAAGTGCTGCC TGATGACAACAAGGCTGCGGGCAATGGCAAAGGGAAAGGCAAACAGAATGCCAAGGGGCT CCGTATGATCAAACACAAGTCCAGAAAATGCACATTCATCGAACAAATCAACAACGTCGA GTCGGTGCTCTAAAGCTTGGGTGATTAGCTCTTGAAATCTCCTGCCTTCTGCTACTGCTT TTAGTTGGCTGCAATGGACTAGTGGAACTTGGCTAGGTGGTGTTCCTGCTGACTTTAAGG GCCTGTTTGGGGGAGCTGGAGAGAGCTGGAGATTCTGAGAAGCTAGCTGGAGATTCTGAG AAGCTGAGGAGGGTCTGTTTGGGGGAGCTTCTTTAGGTTTGTTGGCTGGTGAGCTGAGAG GCTGAATTGTCTGAAATACCCCTGAGGTAGATGGTGGTCCTGATCTCTTGTTAATTATTT GGTTGATAGATTACACCCTTCCATATATAATTTGTGTGCATATAATTTTGTAAATATTCA TTTTTCATAATGATAGGAATAAAAAAATGTGTTCATTTTTAAGGCAATGAGAAAGGTTAA AT



consensusID : consensus_10606#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 813
fasta sequence
                              [CATGCCGGTGACTGGATGCTGCCATTCTGCGGCAAGGGTGAGTATGTCCCTGAGCTCAAGCTTTGGTTTGGTGTGTCCGCCAAGAACAATTATGCCCCATGTGCTTCCGATCTCTCACCTGTTGTCAGAGCTGAGCCACCAAAACCTGGCTGCATTTGGGAGGATCTCAACCTTCCTGAGGATTGGCGTCCGTGCAGGATGTCTGACCTCGTCAATCTTGGCTCAGGAAGGTTTTGCATCATTAGGTTCTTCCAACCATCGGGTAACAGGGACTACATGAAAGACCAAATTGATCAGACCATTGCTGTCTTTAGTGGTGTGGAAGTGCTGCCTGATGACAACAAGGCTGCGGGCAATGGCAAAGGGAAAGGCAAACAGAATGCCAAGGGGCTCCGTATGATCAAACACAAGTCCAGAAAATGCACATTCATCGAACAAATCAACAACGTCGAGTCGGTGCTCTAAAGCTTGGGTGATTAGCTCTTGAAATCTCCTGCCTTCTGCTACTGCTTTTAGTTGGCTGCAATGGACTAGTGGAACTTGGCTAGGTGGTGTTCCTGCTGACTTTAAGGGCCTGTTTGGGGGAGCTGGAGAGAGCTGGAGATTCTGAGAAGCTAGCTGGAGATTCTGAGAAGCTGAGGAGGGTCTGTTTGGGGGAGCTTCTTTAGGTTTGTTGGCTGGTGAGCTGAGAGGCTGAATTGTCTGAAATACCCCTGAGGTAGATGGTGGTCCTGATCTCTTGTTAATTATTTGGTTGATAGATTACAACGGGTCCATATATAATTTGTGTGCATATAATTTGTCTTAAAAGGA]

[-] EMBL CB658897             [CATGCCGGTGACTGGATGCTGCCATTCTGCGGCAAGGGTGAGTATGTCCCTGAGCTCAAGCTTTGGTTTGGTGTGTCCGCCAAGAACAATTATGCCCCATGTGCTTCCGATCTCTCACCTGTTGTCAGAGCTGAGCCACCAAAACCTGGCTGCATTTGGGAGGATCTCAACCTTCCTGAGGATTGGCGTCCGTGCAGGATGTCTGACCTCGTCAATCTTGGCTCAGGAAGGTTTTGCATCATTAGGTTCTTCCAACCATCGGGTAACAGGGACTACATGAAAGACCAAATTGATCAGACCATTGCTGTCTTTAGTGGTGTGGAAGTGCTGCCTGATGACAACAAGGCTGCGGGCAATGGCAAAGGGAAAGGCAAACAGAATGCCAAGGGGCTCCGTATGATCAAACACAAGTCCAGAAAATGCACATTCATCGAACAAATCAACAACGTCGAGTCGGTGCTCTAAAGCTTGGGTGATTAGCTCTTGAAATCTCCTGCCTTCTGCTACTGCTTTTAGTTGGCTGCAATGGACTAGTGGAACTTGGCTAGGTGGTGTTCCTGCTGACTTTAAGGGCCTGTTTGGGGGAGCTGGAGAGAGCTGGAGATTCTGAGAAGCTAGCTGGAGATTCTGAGAAGCTGAGGAGGGTCTGTTTGGGGGAGCTTCTTTAGGTTTGTTGGCTGGTGAGCTGAGAGGCTGAATTGTCTGAAATACCCCTGAGGTAGATGGTGGTCCTGATCTCTTGTTAATTATTTGGTTGATAGATTACAACGGGTCCATATATAATTTGTGTGCATATAATTTGTCTTAAAAGGA]


>consensus_10606#1 CATGCCGGTGACTGGATGCTGCCATTCTGCGGCAAGGGTGAGTATGTCCCTGAGCTCAAG CTTTGGTTTGGTGTGTCCGCCAAGAACAATTATGCCCCATGTGCTTCCGATCTCTCACCT GTTGTCAGAGCTGAGCCACCAAAACCTGGCTGCATTTGGGAGGATCTCAACCTTCCTGAG GATTGGCGTCCGTGCAGGATGTCTGACCTCGTCAATCTTGGCTCAGGAAGGTTTTGCATC ATTAGGTTCTTCCAACCATCGGGTAACAGGGACTACATGAAAGACCAAATTGATCAGACC ATTGCTGTCTTTAGTGGTGTGGAAGTGCTGCCTGATGACAACAAGGCTGCGGGCAATGGC AAAGGGAAAGGCAAACAGAATGCCAAGGGGCTCCGTATGATCAAACACAAGTCCAGAAAA TGCACATTCATCGAACAAATCAACAACGTCGAGTCGGTGCTCTAAAGCTTGGGTGATTAG CTCTTGAAATCTCCTGCCTTCTGCTACTGCTTTTAGTTGGCTGCAATGGACTAGTGGAAC TTGGCTAGGTGGTGTTCCTGCTGACTTTAAGGGCCTGTTTGGGGGAGCTGGAGAGAGCTG GAGATTCTGAGAAGCTAGCTGGAGATTCTGAGAAGCTGAGGAGGGTCTGTTTGGGGGAGC TTCTTTAGGTTTGTTGGCTGGTGAGCTGAGAGGCTGAATTGTCTGAAATACCCCTGAGGT AGATGGTGGTCCTGATCTCTTGTTAATTATTTGGTTGATAGATTACAACGGGTCCATATA TAATTTGTGTGCATATAATTTGTCTTAAAAGGA



consensusID : consensus_10606#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 386
fasta sequence
                              [TGCCTTTTGGTACTGCTTTTAGTTGGCTGCAATGGACTAGTGGAACTTGGCTAGGTGGTGTTCCTGCTGACTTTAAGGGCCTGTTTGGGGGAGCTGGAAAAAGCTGGAGATTTTTAGAAGCTAGCTGGAGATTTTGAGAAGCTGAGGAGGGTTTGTTTGGGGGAGCTTTTTTAGGTTTGTTGGCTGGTGAGCTAAAAGAATAAATTGTTTGAAATACCCCTGAGGTAAATGGGGGTCCTAAAATATTGTTAATTATTTGGTTGATAGATTACACCCTTCCATATATAATTTGTGGGCATATAATTTTGTAAATATTCATTTTTCATAATGATAGGAATAAAAAAATGTGTTCTTTTTTAAAAAAAAAAAAAAAAAAAAAAAAAAAA]

[-] EMBL CF331344             [TGCCTTTTGGTACTGCTTTTAGTTGGCTGCAATGGACTAGTGGAACTTGGCTAGGTGGTGTTCCTGCTGACTTTAAGGGCCTGTTTGGGGGAGCTGGAAAAAGCTGGAGATTTTTAGAAGCTAGCTGGAGATTTTGAGAAGCTGAGGAGGGTTTGTTTGGGGGAGCTTTTTTAGGTTTGTTGGCTGGTGAGCTAAAAGAATAAATTGTTTGAAATACCCCTGAGGTAAATGGGGGTCCTAAAATATTGTTAATTATTTGGTTGATAGATTACACCCTTCCATATATAATTTGTGGGCATATAATTTTGTAAATATTCATTTTTCATAATGATAGGAATAAAAAAATGTGTTCTTTTTTAAAAAAAAAAAAAAAAAAAAAAAAAAAA]


>consensus_10606#2 TGCCTTTTGGTACTGCTTTTAGTTGGCTGCAATGGACTAGTGGAACTTGGCTAGGTGGTG TTCCTGCTGACTTTAAGGGCCTGTTTGGGGGAGCTGGAAAAAGCTGGAGATTTTTAGAAG CTAGCTGGAGATTTTGAGAAGCTGAGGAGGGTTTGTTTGGGGGAGCTTTTTTAGGTTTGT TGGCTGGTGAGCTAAAAGAATAAATTGTTTGAAATACCCCTGAGGTAAATGGGGGTCCTA AAATATTGTTAATTATTTGGTTGATAGATTACACCCTTCCATATATAATTTGTGGGCATA TAATTTTGTAAATATTCATTTTTCATAATGATAGGAATAAAAAAATGTGTTCTTTTTTAA AAAAAAAAAAAAAAAAAAAAAAAAAA



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_10606#0      GCACAGGCAGCATCCCCTCCCCGTCCGCTGCGCGAGAGCGACTGCGCCGGCGCCGGCGCC 60
consensus_10606#1      ------------------------------------------------------------
consensus_10606#2      ------------------------------------------------------------
                                                                                   

consensus_10606#0      GGCGCCGCCTCCAAGTCGATCTCCCTCGGCCTCGACTACCGTCTCCTCGCGAGTTCACCC 120
consensus_10606#1      ------------------------------------------------------------
consensus_10606#2      ------------------------------------------------------------
                                                                                   

consensus_10606#0      GCCACCTGCGCCGGTCTCCACCTATCCTGCTGTTTCCGGATTTAATATTAAGGAAAGGGC 180
consensus_10606#1      ------------------------------------------------------------
consensus_10606#2      ------------------------------------------------------------
                                                                                   

consensus_10606#0      GATCATGAGCCTCCATCGATTTGTGAATCTACTAATGGAGAACGGTGAGAAGGGTGTCTA 240
consensus_10606#1      ------------------------------------------------------------
consensus_10606#2      ------------------------------------------------------------
                                                                                   

consensus_10606#0      CTCACTGCGTCGTCTCAACCTGTCTCGACACCCATTGTTCTACTCATCAACAGAGGTGTC 300
consensus_10606#1      ------------------------------------------------------------
consensus_10606#2      ------------------------------------------------------------
                                                                                   

consensus_10606#0      AGCTGTCCAAGATCTGCCAGCGCTAGGAGAAGAAGGATATGTATATTACCCGTTCAAGGG 360
consensus_10606#1      ------------------------------------------------------------
consensus_10606#2      ------------------------------------------------------------
                                                                                   

consensus_10606#0      TTATGGCGAGAGTAGCAAACAGGCTTTTGAGGTGGAGAGCATTCGGCTTCCATCACCAAC 420
consensus_10606#1      ------------------------------------------------------------
consensus_10606#2      ------------------------------------------------------------
                                                                                   

consensus_10606#0      TGTCAGCTTGCTACCGACTCCATCCTCAACTGATAAAATGTGCAAGTTTGATTGTTTCTC 480
consensus_10606#1      ------------------------------------------------------------
consensus_10606#2      ------------------------------------------------------------
                                                                                   

consensus_10606#0      TGTCTCGGAGAGCAAGATCATATGCACAGACCAGGCTGCACGCACCTTCCTCTATGACCT 540
consensus_10606#1      ------------------------------------------------------------
consensus_10606#2      ------------------------------------------------------------
                                                                                   

consensus_10606#0      TGATGAGCATTGCGTCACAAGCATGCCCAGCCTCCATGCTCCGAAGTATTCCCCCTTCTC 600
consensus_10606#1      ------------------------------------------------------------
consensus_10606#2      ------------------------------------------------------------
                                                                                   

consensus_10606#0      AGTCTCGGTTGCAATCCAAGGCGAAAAAGGAGAAGGGGAAAGCAGCAGCAGCAGCAGCCG 660
consensus_10606#1      ------------------------------------------------------------
consensus_10606#2      ------------------------------------------------------------
                                                                                   

consensus_10606#0      CCGCCTCTATGTCATGGAGGAAGTCCTCTTGCCAGAGAGGGGCACGGGGAGTAGCTACCA 720
consensus_10606#1      ------------------------------------------------------------
consensus_10606#2      ------------------------------------------------------------
                                                                                   

consensus_10606#0      GTTCGAGGCCTTTGACTATCGCAAGCCAGGACCAGAATATTTGGTTAAGGCTTGGCACTG 780
consensus_10606#1      ------------------------------------------------------------
consensus_10606#2      ------------------------------------------------------------
                                                                                   

consensus_10606#0      TGATCCACTGCCGCCACCGCCTTTTGTCCGTGACCCTCGCTACGTTCCCTCTCCAGTGAG 840
consensus_10606#1      ------------------------------------------------------------
consensus_10606#2      ------------------------------------------------------------
                                                                                   

consensus_10606#0      TTCCTATGCAGTGGTGGGAAATTTCATCTGCATATCCACTAAGGGGATTGGGACGTACTG 900
consensus_10606#1      ------------------------------------------------------------
consensus_10606#2      ------------------------------------------------------------
                                                                                   

consensus_10606#0      CTTTGACACGGTGAGCTGCAGCTGGAGTCATGCCGGTGACTGGATGCTGCCATTCTGCGG 960
consensus_10606#1      ----------------------------CATGCCGGTGACTGGATGCTGCCATTCTGCGG 32
consensus_10606#2      ------------------------------------------------------------
                                                                                   

consensus_10606#0      CAAGGGTGAGTATGTCCCTGAGCTCAAGCTTTGGTTTGGTGTGTCCGCCAAGAACAACTA 1020
consensus_10606#1      CAAGGGTGAGTATGTCCCTGAGCTCAAGCTTTGGTTTGGTGTGTCCGCCAAGAACAATTA 92
consensus_10606#2      ------------------------------------------------------------
                                                                                   

consensus_10606#0      TGCCCCATGTGCTTCCGATCTCTCACCTGTTGTCAGAGCTGAGCCACCAAAACCTGGCTG 1080
consensus_10606#1      TGCCCCATGTGCTTCCGATCTCTCACCTGTTGTCAGAGCTGAGCCACCAAAACCTGGCTG 152
consensus_10606#2      ------------------------------------------------------------
                                                                                   

consensus_10606#0      CATTTGGGAGGATCTCAACCTTCCTGAGGATTGGCGTCCGTGCAGGATGTCTGACCTCGT 1140
consensus_10606#1      CATTTGGGAGGATCTCAACCTTCCTGAGGATTGGCGTCCGTGCAGGATGTCTGACCTCGT 212
consensus_10606#2      ------------------------------------------------------------
                                                                                   

consensus_10606#0      CAATCTTGGCTCAGGAAGGTTTTGCATCATTAGGTTCTTCCAACCATCGGGTAACAGGGA 1200
consensus_10606#1      CAATCTTGGCTCAGGAAGGTTTTGCATCATTAGGTTCTTCCAACCATCGGGTAACAGGGA 272
consensus_10606#2      ------------------------------------------------------------
                                                                                   

consensus_10606#0      CTACATGAAAGACCAAATTGATCAGACCATTGCTGTCTTTAGTGGTGTGGAAGTGCTGCC 1260
consensus_10606#1      CTACATGAAAGACCAAATTGATCAGACCATTGCTGTCTTTAGTGGTGTGGAAGTGCTGCC 332
consensus_10606#2      ------------------------------------------------------------
                                                                                   

consensus_10606#0      TGATGACAACAAGGCTGCGGGCAATGGCAAAGGGAAAGGCAAACAGAATGCCAAGGGGCT 1320
consensus_10606#1      TGATGACAACAAGGCTGCGGGCAATGGCAAAGGGAAAGGCAAACAGAATGCCAAGGGGCT 392
consensus_10606#2      ------------------------------------------------------------
                                                                                   

consensus_10606#0      CCGTATGATCAAACACAAGTCCAGAAAATGCACATTCATCGAACAAATCAACAACGTCGA 1380
consensus_10606#1      CCGTATGATCAAACACAAGTCCAGAAAATGCACATTCATCGAACAAATCAACAACGTCGA 452
consensus_10606#2      ------------------------------------------------------------
                                                                                   

consensus_10606#0      GTCGGTGCTCTAAAGCTTGGGTGATTAGCTCTTGAAATCTCCTGCCTTCTGCTACTGCTT 1440
consensus_10606#1      GTCGGTGCTCTAAAGCTTGGGTGATTAGCTCTTGAAATCTCCTGCCTTCTGCTACTGCTT 512
consensus_10606#2      ------------------------------------------TGCCTTTTGGTACTGCTT 18
                                                                 ****** ** ********

consensus_10606#0      TTAGTTGGCTGCAATGGACTAGTGGAACTTGGCTAGGTGGTGTTCCTGCTGACTTTAAGG 1500
consensus_10606#1      TTAGTTGGCTGCAATGGACTAGTGGAACTTGGCTAGGTGGTGTTCCTGCTGACTTTAAGG 572
consensus_10606#2      TTAGTTGGCTGCAATGGACTAGTGGAACTTGGCTAGGTGGTGTTCCTGCTGACTTTAAGG 78
                       ************************************************************

consensus_10606#0      GCCTGTTTGGGGGAGCTGGAGAGAGCTGGAGATTCTGAGAAGCTAGCTGGAGATTCTGAG 1560
consensus_10606#1      GCCTGTTTGGGGGAGCTGGAGAGAGCTGGAGATTCTGAGAAGCTAGCTGGAGATTCTGAG 632
consensus_10606#2      GCCTGTTTGGGGGAGCTGGAAAAAGCTGGAGATTTTTAGAAGCTAGCTGGAGATTTTGAG 138
                       ******************** * *********** * ****************** ****

consensus_10606#0      AAGCTGAGGAGGGTCTGTTTGGGGGAGCTTCTTTAGGTTTGTTGGCTGGTGAGCTGAGAG 1620
consensus_10606#1      AAGCTGAGGAGGGTCTGTTTGGGGGAGCTTCTTTAGGTTTGTTGGCTGGTGAGCTGAGAG 692
consensus_10606#2      AAGCTGAGGAGGGTTTGTTTGGGGGAGCTTTTTTAGGTTTGTTGGCTGGTGAGCTAAAAG 198
                       ************** *************** ************************ * **

consensus_10606#0      GCTGAATTGTCTGAAATACCCCTGAGGTAGATGGTGGTCCTGATCTCTTGTTAATTATTT 1680
consensus_10606#1      GCTGAATTGTCTGAAATACCCCTGAGGTAGATGGTGGTCCTGATCTCTTGTTAATTATTT 752
consensus_10606#2      AATAAATTGTTTGAAATACCCCTGAGGTAAATGGGGGTCCTAAAATATTGTTAATTATTT 258
                         * ****** ****************** **** ****** *  * *************

consensus_10606#0      GGTTGATAGATTACACCCT-TCCATATATAATTTGTGTGCATATAATTTTGTAAATATTC 1739
consensus_10606#1      GGTTGATAGATTACAACGGGTCCATATATAATTTGTGTGCATATAATTTGTCTTAAAAGG 812
consensus_10606#2      GGTTGATAGATTACACCCT-TCCATATATAATTTGTGGGCATATAATTTTGTAAATATTC 317
                       *************** *   ***************** ***********     * *   

consensus_10606#0      ATTTTTCATAATGATAGGAATAAAAAAATGTGTTCATTTTTAAGGCAATGAGAAAGGTTA 1799
consensus_10606#1      A----------------------------------------------------------- 813
consensus_10606#2      ATTTTTCATAATGATAGGAATAAAAAAATGTGTTCTTTTTTAAAAAAAAAAAAAAAAAAA 377
                       *                                                           

consensus_10606#0      AAT------ 1802
consensus_10606#1      ---------
consensus_10606#2      AAAAAAAAA 386
                                




Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)