These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_10615#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 1248 fasta sequence [TTAAAAGCTAAGCAAGCAACAGCCAGACTCGAAGATGAAATGAATGAAGCTGAGGATGAAAAGGCGCAAGTGACCATAAAGTTCAAGAAAAACATAAAATGGACTATTCATTATGAATCAACAGGTTTAAATTTTGAGGTTCACTACGCTTTGCAAGAGCAACCTCATATTCTGTTAGCCCAGATTGCTCAGAGAACAGCTAGGTCTGTTTTTGTCAAGGCCTGTAAGAATATTGATCGATGTGAAGTGAATAAACCAAAGAAGATAGATAATAATACGATAAATACTCCCATCACTCTACAAACAGCAGGGGTGAACTTTGAAGTATTCCATAAGTTAGTGGACTAT-CTCGATATCAATGAGGTCAGATCCAATGATATACACGCTATGTTGAACACATATGGGGTAGAGGCTGCAAGGGCAACCATCATTGGGGAAGTGAAGGGCGTATTCGGTGCTTATGGTATCCATGTTGACATGAGGCATCTGAACTTGATTGCGGATTTCATGACCTTCGACGGCGGTTACCGACCGATGAGCAGGCTAGGGATGGGCCAGTTCAGCACCTCGCCATTTGGTAAGATGACTTTTGAGACGGCAACCAAGTTTATTGTGGAAGCAGCTTCTCATGGAGAGTCTGACACACTGGACGGCCCTTCGGCAAGCGTCTGTCTGGGGAAACCTGTTAAGGTGGGGACGGGTTCCTTTGGCTTGCTGCAGAATTTTTCCCTGGAGCAACCTGTTGCGATGTAAGCATACATGTAGCATCATCAGCCTGTTTGCTTTACTGGATTAGTCCAATTTTGATGGAGGCTGCCATAGAGCAGTAGGAATGTGTTACATATACGGTACTTTTTGCTAGCAAGTGCAGCAAGTTATGTCAGTTCTCAGTTGTGTTTGTGTAGCAGGAAACGAACATGTGAACACTGATACTCCCTTTGGTAGTAGTATGGACATTAGTCTCTGTGTAGACTGTGTGGAGTATCAGGCTGGCAGCAGCAGTAGCAGCATGATCTTGGTTTCTTTGCCATTTTAGATGCATTTCAGCACCCTTGTTTTTTCTGCCTTTAAACCCAAATCCGATAGCCACTTTGCCGTTGCTGTCTGCATGAGGTTAAGATGGCAGCTGAGGGGGAATATATCTAGGACTCCAGCTGCAATATCTTTTCTATAATTGAGTGTGCAAGACAGCATCCTCTGATTCAGGGCCTGTTTAGATCCATATGAGTAGATGGATCTCCTTCTTCT] [+] EMBL CA767334 [TTAAAAGCTAAGCAAGCAACAGCCAGACTCGAAGATGAAATGAATGAAGCTGAGGATGAAAAGGCGCAAGTGACCATAAAGTTCAAGAAAAACATAAAATGGACTATTCATTATGAATCAACAGGTTTAAATTTTGAGGTTCACTACGCTTTGCAAGAGCAACCTCATATTCTGTTAGCCCAGATTGCTCAGAGAACAGCTAGGTCTGTTTTTGTCAAGGCCTGTAAGAATATTGATCGATGTGAAGTGAATAAACCAAAGAAGATAGATAATAATACGATAAATACTCCCATCACTCTACAAACAGCGGGGGTGAACTTTGAAGTATTCCATAAGTTAGTGGACTAT CTCGATATCAATGAGGTCAGATCCAATGATATACACGCTATGTTGAACACATATGGGGTAGAGGCTGCAAGGGCAACCATCATTGGGGAAGTGAAGGGCGTATTCGGTGCTTATGGTATCCATGTTGACATGAGGCATCTGAACTTGATTGCGGATTTCATGACCTTCGACGGCGGTTACCGACCGATGAGCAGGCTAGGGATGGGCCAGTTCAGCACCTCGCCATTTGGTAAGATGACTTTTGAGACGGCAACCAAGTTTATTGTGGAAGCATCTTCTCATGGAGAGTCTGACACACTGGACGGCCCTTCGGCAAGCGTCTGTCTGGGGAAACCTGNTAAGGTGGGGACGGGTTCCTTTGGCTTGCTGCAGAATTTTTNCCTGGAGCAACCTGNTGCGATGTAAGCATACATGTAGCATCATCAGCCTGGTTGCTTTACTGGATTAGTCCAATTTTGATGGANGCTGnc ] [+] EMBL AK059094 [ TAAGCAAGCAACAGCCAGACTCGAAGATGAAATGAATGAAGCTGAGGATGAAAAGGCGCAAGTGACCATAAAGTTCAAGAAAAACATAAAATGGACTATTCATTATGAATCAACAGGTTTAAATTTTGAGGTTCACTACGCTTTGCAAGAGCAACCTCATATTCTGTTAGCCCAGATTGCTCAGAGAACAGCTAGGTCTGTTTTTGTCAAGGCCTGTAAGAATATTGATCGATGTGAAGTGAATAAACCAAAGAAGATAGATAATAATACGATAAATACTCCCATCACTCTACAAACAGCAGGGGTGAACTTTGAAGTATTCCATAAGTTAGTGGACTAT CTCGATATCAATGAGGTCAGATCCAATGATATACACGCTATGTTGAACACATATGGGGTAGAGGCTGCAAGGGCAACCATCATTGGGGAAGTGAAGGGCGTATTCGGTGCTTATGGTATCCATGTTGACATGAGGCATCTGAACTTGATTGCGGATTTCATGACCTTCGACGGCGGTTACCGACCGATGAGCAGGCTAGGGATGGGCCAGTTCAGCACCTCGCCATTTGGTAAGATGACTTTTGAGACGGCAACCAAGTTTATTGTGGAAGCAGCTTCTCATGGAGAGTCTGACACACTGGACGGCCCTTCGGCAAGCGTCTGTCTGGGGAAACCTGTTAAGGTGGGGACGGGTTCCTTTGGCTTGCTGCAGAATTTTTCCCTGGAGCAACCTGTTGCGATGTAAGCATACATGTAGCATCATCAGCCTGTTTGCTTTACTGGATTAGTCCAATTTTGATGGAGGCTGCCATAGAGCAGTAGGAATGTGTTACATATACGGTACTTTTTGCTAGCAAGTGCAGCAAGTTATGTCAGTTCTCAGTTGTGTTTGTGTAGCAGGAAACGAACATGTGAACACTGATACTCCCTTTGGTAGTAGTATGGACATTAGTCTCTGTGTAGACTGTGTGGAGTATCAGGCTGGCAGCAGCAGTAGCAGCATGATCTTGGTTTCTTTGCCA ] [+] EMBL CB096429 [ TAAACCAAAGAAGATAGATAATAATACGATAAATACTCCCATCACTCTACAAACAGCAGGGGTGAACCTTGAAGTATTCCATAAGTTAGTGGACTATNCTCGATATCAATGAGGTCAGATCCAATGATATACACGCTATGTTGAACACATATGGGGTAGAGGCTGCAAGGGCAACCATCATTGGGGAAGTGAAGGGCCTATTCGGTGCTTATGGTATCCATGTTGACATGAGGCATCTGAACTTGATTGCGGATTTCATGACCTTCGACGGCGGTTACCGACCGATGAGCAGGCTAGGGATGGGCCAGTTCAGCACCTCGCCATTTGGTAAGATGACTTTTGAGACGGCAACCAAGTTTATTGTGGAAGCAGCTTCTCATGGAGAGTCTGACACACTGGACGGCCCTTCGGCAAGCGTCTGTCTGGGGAAACCTGTTAAGGTGGGGACGGGTTCCTTTGGCTTGCTGCAGAATTTTTCCCTGGAGCAACCTGTTGCGATGTAAGCATACATGTAGCATCATCAGCCTGTTTGCTTTACTGGATTAGTCCAATTTTGATGGAGGCTGCCATAGAGCAGTAGGAATGTGNTACATATACGGTACTTTTTGCCAGCAAGTGCAGCAAGGTATGTCAGNTCTCAGTTGTGTTTGTGTAGCAGGAAACGAACATGTGAACACTGATACTNCCTTTGGTAGTAGTATGGACATTAGTCTCTGNGTANAC TGNGGAGTATCAGGCTGGCAGCAGCAGTAGCAGCATGATCTTGGTTTCT ] [-] EMBL AU174442 [ CAGTAGGAATGTGTTACATATACGGTACTTTTTGCTAGCAAGTGCAGCAAGTTATGTCAGTTCTCAGTTGTGTTTGTGTAGCAGGAAACGAACATGTGAACACTGATACTCCCTTTGGTAGTAGTATGGACATTAGTCTCTGTGTAGACTGTGTGGAGTATCAGGCTGGCAGCAGCAGTAGCAGCATGATCTTGGTTTCTTTGCCATTTTAGATGCATTTCAGCACCCTTGTTTTTTCTGCCTTTAAACCCAAATCCGATAGCCACTTTGCCGTTGCTGTCTGCATGAGGTTAAGATGGCAGCTGAGGGGGAATATATCTAGGACTCCAGCTGCAATATCTTTTCTATAATTGAGTGTGCAAGACAGCATCCTCTGATTCAGGGCCTGTTTAGATCCATATGAGTAGATGGATCTCCTTCTTCT] consensusID : consensus_10615#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 441 fasta sequence [TTTTTTTTTTTTTTTTTTTTTTTACATGTAGCATCATCAGCCTGTTTGCTTTACTGGATTAGTCCAATTTTGATGGAGGCTGCCATAGAGCAGTAGGAATGTGTTACATATACCGGTACTTTTTGCTAGCAAGNGCAGCAAGTTATGTCANTTNTCAGTTGGGTTTGTGTAGCAGGAAACGAACATGTGAACACTGATACTCCCTTTGGTAGTAGTATGGACATTAGTCTCTGTGTAGACTGNGTGGAGTATCAGGCTGGCAGCAGCAGTAGCAGCATGATCTTGGTTTCTTTGCCATTTTANATGCATTTCAGCACCCTTGTTTTTTCTGCCTTTAAACCCAAATCCGATAGCCACTTTGCCGTTGCTGTCTGCATGAGGTTAAGATGGCAGCTGAGGGGGAATATATCTAGGACTCCAGCTGCAATATCTTTTCTATAA] [-] EMBL AU174443 [TTTTTTTTTTTTTTTTTTTTTTTACATGTAGCATCATCAGCCTGTTTGCTTTACTGGATTAGTCCAATTTTGATGGAGGCTGCCATAGAGCAGTAGGAATGTGTTACATATACCGGTACTTTTTGCTAGCAAGNGCAGCAAGTTATGTCANTTNTCAGTTGGGTTTGTGTAGCAGGAAACGAACATGTGAACACTGATACTCCCTTTGGTAGTAGTATGGACATTAGTCTCTGTGTAGACTGNGTGGAGTATCAGGCTGGCAGCAGCAGTAGCAGCATGATCTTGGTTTCTTTGCCATTTTANATGCATTTCAGCACCCTTGTTTTTTCTGCCTTTAAACCCAAATCCGATAGCCACTTTGCCGTTGCTGTCTGCATGAGGTTAAGATGGCAGCTGAGGGGGAATATATCTAGGACTCCAGCTGCAATATCTTTTCTATAA] consensusID : consensus_10615#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 347 fasta sequence [AGGGACTGAAGGAGTAGTTGGCTTGCTGCAGAATTTTTCCCTGGAGCAACCTGTTGCGATGTAAGCATACATGTAGCATCATCAGCCTGTTTGCTTTACTGGATTAGTCCAATTTTGATGGAGGCTGCCATAGAGCAGTAGGAATGTGTTACATATACGGTACTTTTTGCTAGCAAGTGCAGCAAGTTATGTCAGTTCTCAGTTGTGTTTGTGTAGCAGGAAACGAACATGTGAACACTGATACTCCCTTTGGTAGTAGTATGGACATTAGTCTCTGTGTAGACTGTGTGGAGTATCAGGCTGGCAGCAGCAGTAGCAGCATGATCTTGGTTTCTTTGCCAAAAAAA] [-] EMBL CF331682 [AGGGACTGAAGGAGTAGTTGGCTTGCTGCAGAATTTTTCCCTGGAGCAACCTGTTGCGATGTAAGCATACATGTAGCATCATCAGCCTGTTTGCTTTACTGGATTAGTCCAATTTTGATGGAGGCTGCCATAGAGCAGTAGGAATGTGTTACATATACGGTACTTTTTGCTAGCAAGTGCAGCAAGTTATGTCAGTTCTCAGTTGTGTTTGTGTAGCAGGAAACGAACATGTGAACACTGATACTCCCTTTGGTAGTAGTATGGACATTAGTCTCTGTGTAGACTGTGTGGAGTATCAGGCTGGCAGCAGCAGTAGCAGCATGATCTTGGTTTCTTTGCCAAAAAAA] [+] EMBL CF331681 [ GGGACTGAAGGAGTAGTTGGCTTGCTGCAGAATTTTTCCCTGGAGCAACCTGTTGCGATGTAAGCATACATGTAGCATCATCAGCCTGTTTGCTTTACTGGATTAGTCCAATTTTGATGGAGGCTGCCATAGAGCAGTAGGAATGTGTTACATATACGGTACTTTTTGCTAGCAAGTGCAGCAAGTTATGTCAGTTCTCAGTTGTGTTTGTGTAGCAGGAAACGAACATGTGAACACTGATACTCCCTTTGGTAGTAGTATGGACATTAGTCTCTGTGTAGACTGTGTGGAGTATCAGGCTGGCAGCAGCAGTAGCAGCATGATCTTGGTTTCTTTGCCAAAAAA ] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_10615#0 TTAAAAGCTAAGCAAGCAACAGCCAGACTCGAAGATGAAATGAATGAAGCTGAGGATGAA 60 consensus_10615#1 ------------------------------------------------------------ consensus_10615#2 ------------------------------------------------------------ consensus_10615#0 AAGGCGCAAGTGACCATAAAGTTCAAGAAAAACATAAAATGGACTATTCATTATGAATCA 120 consensus_10615#1 ------------------------------------------------------------ consensus_10615#2 ------------------------------------------------------------ consensus_10615#0 ACAGGTTTAAATTTTGAGGTTCACTACGCTTTGCAAGAGCAACCTCATATTCTGTTAGCC 180 consensus_10615#1 ------------------------------------------------------------ consensus_10615#2 ------------------------------------------------------------ consensus_10615#0 CAGATTGCTCAGAGAACAGCTAGGTCTGTTTTTGTCAAGGCCTGTAAGAATATTGATCGA 240 consensus_10615#1 ------------------------------------------------------------ consensus_10615#2 ------------------------------------------------------------ consensus_10615#0 TGTGAAGTGAATAAACCAAAGAAGATAGATAATAATACGATAAATACTCCCATCACTCTA 300 consensus_10615#1 ------------------------------------------------------------ consensus_10615#2 ------------------------------------------------------------ consensus_10615#0 CAAACAGCAGGGGTGAACTTTGAAGTATTCCATAAGTTAGTGGACTATCTCGATATCAAT 360 consensus_10615#1 ------------------------------------------------------------ consensus_10615#2 ------------------------------------------------------------ consensus_10615#0 GAGGTCAGATCCAATGATATACACGCTATGTTGAACACATATGGGGTAGAGGCTGCAAGG 420 consensus_10615#1 ------------------------------------------------------------ consensus_10615#2 ------------------------------------------------------------ consensus_10615#0 GCAACCATCATTGGGGAAGTGAAGGGCGTATTCGGTGCTTATGGTATCCATGTTGACATG 480 consensus_10615#1 ------------------------------------------------------------ consensus_10615#2 ------------------------------------------------------------ consensus_10615#0 AGGCATCTGAACTTGATTGCGGATTTCATGACCTTCGACGGCGGTTACCGACCGATGAGC 540 consensus_10615#1 ------------------------------------------------------------ consensus_10615#2 ------------------------------------------------------------ consensus_10615#0 AGGCTAGGGATGGGCCAGTTCAGCACCTCGCCATTTGGTAAGATGACTTTTGAGACGGCA 600 consensus_10615#1 ------------------------------------------------------------ consensus_10615#2 ------------------------------------------------------------ consensus_10615#0 ACCAAGTTTATTGTGGAAGCAGCTTCTCATGGAGAGTCTGACACACTGGACGGCCCTTCG 660 consensus_10615#1 ------------------------------------------------------------ consensus_10615#2 ------------------------------------------------------------ consensus_10615#0 GCAAGCGTCTGTCTGGGGAAACCTGTTAAGGTGGGGACGGGTTCCTTTGGCTTGCTGCAG 720 consensus_10615#1 ------------------------------------------------------------ consensus_10615#2 -----------------------------AGGGACTGAAGGAGTAGTTGGCTTGCTGCAG 31 consensus_10615#0 AATTTTTCCCTGGAGCAACCTGTTGCGATGTAAGCATACATGTAGCATCATCAGCCTGTT 780 consensus_10615#1 --------------TTTTTTTTTTTTTTTTTTTTTTTACATGTAGCATCATCAGCCTGTT 46 consensus_10615#2 AATTTTTCCCTGGAGCAACCTGTTGCGATGTAAGCATACATGTAGCATCATCAGCCTGTT 91 * ** * * ************************ consensus_10615#0 TGCTTTACTGGATTAGTCCAATTTTGATGGAGGCTGCCATAGAGCAGTAGGAATGTGTTA 840 consensus_10615#1 TGCTTTACTGGATTAGTCCAATTTTGATGGAGGCTGCCATAGAGCAGTAGGAATGTGTTA 106 consensus_10615#2 TGCTTTACTGGATTAGTCCAATTTTGATGGAGGCTGCCATAGAGCAGTAGGAATGTGTTA 151 ************************************************************ consensus_10615#0 CATATAC-GGTACTTTTTGCTAGCAAGTGCAGCAAGTTATGTCAGTTCTCAGTTGTGTTT 899 consensus_10615#1 CATATACCGGTACTTTTTGCTAGCAAGNGCAGCAAGTTATGTCANTTNTCAGTTGGGTTT 166 consensus_10615#2 CATATAC-GGTACTTTTTGCTAGCAAGTGCAGCAAGTTATGTCAGTTCTCAGTTGTGTTT 210 ******* ******************* **************** ** ******* **** consensus_10615#0 GTGTAGCAGGAAACGAACATGTGAACACTGATACTCCCTTTGGTAGTAGTATGGACATTA 959 consensus_10615#1 GTGTAGCAGGAAACGAACATGTGAACACTGATACTCCCTTTGGTAGTAGTATGGACATTA 226 consensus_10615#2 GTGTAGCAGGAAACGAACATGTGAACACTGATACTCCCTTTGGTAGTAGTATGGACATTA 270 ************************************************************ consensus_10615#0 GTCTCTGTGTAGACTGTGTGGAGTATCAGGCTGGCAGCAGCAGTAGCAGCATGATCTTGG 1019 consensus_10615#1 GTCTCTGTGTAGACTGNGTGGAGTATCAGGCTGGCAGCAGCAGTAGCAGCATGATCTTGG 286 consensus_10615#2 GTCTCTGTGTAGACTGTGTGGAGTATCAGGCTGGCAGCAGCAGTAGCAGCATGATCTTGG 330 **************** ******************************************* consensus_10615#0 TTTCTTTGCCATTTTAGATGCATTTCAGCACCCTTGTTTTTTCTGCCTTTAAACCCAAAT 1079 consensus_10615#1 TTTCTTTGCCATTTTANATGCATTTCAGCACCCTTGTTTTTTCTGCCTTTAAACCCAAAT 346 consensus_10615#2 TTTCTTTGCCAAAAAAA------------------------------------------- 347 *********** * consensus_10615#0 CCGATAGCCACTTTGCCGTTGCTGTCTGCATGAGGTTAAGATGGCAGCTGAGGGGGAATA 1139 consensus_10615#1 CCGATAGCCACTTTGCCGTTGCTGTCTGCATGAGGTTAAGATGGCAGCTGAGGGGGAATA 406 consensus_10615#2 ------------------------------------------------------------ consensus_10615#0 TATCTAGGACTCCAGCTGCAATATCTTTTCTATAATTGAGTGTGCAAGACAGCATCCTCT 1199 consensus_10615#1 TATCTAGGACTCCAGCTGCAATATCTTTTCTATAA------------------------- 441 consensus_10615#2 ------------------------------------------------------------ consensus_10615#0 GATTCAGGGCCTGTTTAGATCCATATGAGTAGATGGATCTCCTTCTTCT 1248 consensus_10615#1 ------------------------------------------------- consensus_10615#2 ------------------------------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||