These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_10621#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1076 fasta sequence [GATTTCCGCCTTCAGGGGTTTCTGAACGAGAGAGAGACAGACGGCGGCGGGCGGCG-GCGGCGGCGGCGAGGGAGCCGAAGCCTGAGAGGATGGTGTTTGGCCGGAGCAAGTCGTCCTCGTCGACGGCGTCTCCTCCCCCTGCTGCGGCGGCTTCCTCGGCGGCCGCGGCGGCGTGCTCGGAGCTGCGTGCGGCGTACCACGAGTGCTTCAACCGCTGGTACGCGGAGAAGTTCGCCAAGGGGCAATGGCACAAGGACGACTGCGTCGGCGAGTGGCACAAGTACCGCGCCTGCCTCGAGGAACATCTGGAAGACAAGAATCTCAGGCAAATCCTATTGGAATCAGAAACATCTGCCTACTATGCCCAGTTTGATGCTGATTCTTCTTCTCGAAAAGGTGGCACCTCGACGAAGTGACAACCTAGGGCTAACCACATATGATCAAGTTTCGCTTGACTCAACCTGGATTAGGAGACCCTCATAGATGAACGAAAAAGGTGTTTGTATTTTACATATTAGATGCATGTTCATGCTGTTGCATCGCGCTGCAGTTCAGCAGCTGAGATGTAAGCTTTTCCAAGATCATATTGAACTCAAACCTACAACTTTGATGTACCCTGAAATTTGCAGCAGTTTCTCTTCCTGAATCTGGGAGAACAGCTTCAGCTATATGTAAACTTAAAAAATATTCTCCAACCCACCAATTTTGTGCTGCATCGATGCAAATTTTCAATACCTCCTATATGCCATCTTCCAAAGTCCTTTGAGCATAGTTCTGGTAGCGTGACAGTGACTTGCAGTCTTGGAGGCTCTTGTGTTGTCCGAATCAGATGCCTTGACTTTGTTGTCTATTATGATGGATTCATTCAACAAAGCTTATTGTTTGTCACATAGGCCTGATCCTCTCTGATGTGGTGGCAAACAAGCAGTGAAAGCTACCAGTCTACCACTCACTCAGGGAAGCTTCGTAGCAAAGCAAAGCATCAGCCTTCACCTTGTCCAGAGCCCAGAGAAAAGGGATCCCCTTCAAGCTGCTGTTCTTCATGGCCAAGAAAGGCAAGAACAACTCTACCAGAA] [+] EMBL AK063109 [GATTTCCGCCTTCAGGGGTTTCTGAACGAGAGAGAGACAGACGGCGGCGGGCGGCG GCGGCGGCGGCGAGGGAGCCGAAGCCTGAGAGGATGGTGTTTGGCCGGAGCAAGTCGTCCTCGTCGACGGCGTCTCCTCCCCCTGCTGCGGCGGCTTCCTCGGCGGCCGCGGCGGCGTGCTCGGAGCTGCGTGCGGCGTACCACGAGTGCTTCAACCGCTGGTACGCGGAGAAGTTCGCCAAGGGGCAATGGCACAAGGACGACTGCGTCGGCGAGTGGCACAAGTACCGCGCCTGCCTCGAGGAACATCTGGAAGACAAGAATCTCAGGCAAATCCTATTGGAATCAGAAACATCTGCCTACTATGCCCAGTTTGATGCTGATTCTTCTTCTCGAAAAGGTGGCACCTCGACGAAGTGACAACCTAGGGCTAACCACATATGATCAAGTTTCGCTTGACTCAACCTGGATTAGGAGACCCTCATAGATGAACGAAAAAGGTGTTTGTATTTTACATATTAGATGCATGTTCATGCTGTTGCATCGCGCTGCAGTTCAGCAGCTGAGATGTAAGCTTTTCCAAGATCATATTGAACTCAAACCTACAACTTTGATGTACCCTGAAATTTGCAGCAGTTTCTCTTCCTGAATCTGGGAGAACAGCTTCAGCTATATGTAAACTTAAAAAATAT ] [+] EMBL CB631973 [ GCGGCGCGCGGCGGCGGCGAGGGAGCCGAAGCCTGAGAGGATGGTGTTTGGCCGGAGCAAGTCGTCCTCGTCGACGGTGTCTCCTCCCCCTGCTGCGGCGGCTTCCTCGGCGGCCGCGGCGGCGTGCTCGGAGCTGCGTGCGGCGTACCACGAGTGCTTCAACCGCTGGTACGCGGAGAAGTTCGCCAAGGGGCAATGGCACAAGGACGACTGCGTCGGCGAGTGGCACAAGTACCGCGCCTGCCTCGAGGAACATCTGGAAGACAAGAATCTCAGGCAAATCCTATTGGAATCAGAAACATCTGCCTACTATGCCCAGTTTGATGCTGATTCTTCTTCTCGAAAAGGTGGCACCTCGACGAAGTGACAACCTAGGGCTAACCACATATGATCAAGTTTCGCTTGACTCAACCTGGATTAGGAGACCCTCATAGATGAACGAAAAAGGTGTTTGTATTTTACATATTAGATGCATGTTCATGCTGTTGCATCGCGCTGCAGTTCAGCAGCTGAGATGTAAGCTTTTCCAAGATCATATTGAACTCAAACCTACAACTTTGATGTACCCTGAAATTTGCAGCAGTTTCTCTTCCTGAATCTGGGAGAACAGCTTCAGCTAT ] [+] EMBL AK073702 [ GAAGACAAGAATCTCAGGCAAATCCTATTGGAATCAGAAACATCTGCCTACTATGCCCAGTTTGATGCTGATTCTTCTTCTCGAAAAGGTGGCACCTCGACGAAGTGACAACCTAGGGCTAACCACATATGATCAAGTTTCGCTTGACTCAACCTGGATTAGGAGACCCTCATAGATGAACGAAAAAGGTGTTTGTATTTTACATATTAGATGCATGTTCATGCTGTTGCATCGCGCTGCAGTTCAGCAGCTGAGATGTAAGCTTTTCCAAGATCATATTGAACTCAAACCTACAACTTTGTTGTACCCTGAAATTTGCAGCAGTTTCTCTTCCTGAATCTGGGAGAACAGCTTCAGCTATATGTAAACTTAAAAAATATTCTCCAACCCACCAATTTTGTGCTGCATCGATGCAAATTTTCAATACCTCCTATATGCCATCTTCCAAAGTCCTTTGAGCATAGTTCTGGTAGCGTGACAGTGACTTGCAGTCTTGGAGGCTCTTGTGTTGTCCGAATCAGATGCCTTGACTTTGTTGTCTATTATGATGGATTCATTCAACAAAGCTTATTGTTTGTCACATAGGCCTGATCCTCTCTGATGTGGTGGCAAACAAGCAGTGAAAGCTACCAGTCTACCACTCACTCAGGGAAGCTTCGTAGCAAAGCAAAGCATCAGCCTTCACCTTGTCCAGAGCCCAGAGAAAAGGGATCCCCTTCAAGCTGCTGTTCTTCATGGCCAAGAAAGGCAAGAACAACTCTACCAGAA] consensusID : consensus_10621#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 654 fasta sequence [TGATTTCCGCCTTCAGGGGTTTCTGAACGAGAGAGAGACAGACGGCGGCGGGCGGCGGCGGCGGCGGCGAGGGAGCCGAAGCCTGAGAGGATGGTGTTTGGCCGGAGCAAGTCGTCCTCGTCGACGGCGTCTCCTCCCCCTGCTGCGGCGGCTTCCTCGGCGGCCGCGGCGGCGTGCTCGGAGCTGCGTGCGGCGTACCACGAGTGCTTCAACCGCTGGTACGCGGAGAAGTTCGCCAAGGGGCAATGGCACAAGGACGACTGCGTCGGCGAGTGGCACAAGTACCGCGCCTGCCTCGAGGTCACTCCCTTCTCGCCGCCTCCGAATTCGATCACAGCATCACTGATTTATTACCGATCCCCTCAATTTGTTGCAAAGACGACTGCCCTAGGGATTGCTCTTGTGTTTTCGCAGTTTAGGATGGGGTTTCATTTAAGTAGGTTTTTAGTTTATATGGCAAGAAATCGAGTTGTTTTCTAGTGTGTTGGTTGCTAGATCAAGTTGATAAAGTGGCTTATGTAATGGTGATGGCTAAAGCCTAAAGGGGATTCTTCTTTGAAGAATCATCTGATTTGGAGCTCCTAGTTAGACCTCTGTCTGTTTGTTGGTCATGATTCAGGCTAGGCGGCGCATGCGCTGCGCTGGCCTGTTGAA] [+] EMBL AK109244 [TGATTTCCGCCTTCAGGGGTTTCTGAACGAGAGAGAGACAGACGGCGGCGGGCGGCGGCGGCGGCGGCGAGGGAGCCGAAGCCTGAGAGGATGGTGTTTGGCCGGAGCAAGTCGTCCTCGTCGACGGCGTCTCCTCCCCCTGCTGCGGCGGCTTCCTCGGCGGCCGCGGCGGCGTGCTCGGAGCTGCGTGCGGCGTACCACGAGTGCTTCAACCGCTGGTACGCGGAGAAGTTCGCCAAGGGGCAATGGCACAAGGACGACTGCGTCGGCGAGTGGCACAAGTACCGCGCCTGCCTCGAGGTCACTCCCTTCTCGCCGCCTCCGAATTCGATCACAGCATCACTGATTTATTACCGATCCCCTCAATTTGTTGCAAAGACGACTGCCCTAGGGATTGCTCTTGTGTTTTCGCAGTTTAGGATGGGGTTTCATTTAAGTAGGTTTTTAGTTTATATGGCAAGAAATCGAGTTGTTTTCTAGTGTGTTGGTTGCTAGATCAAGTTGATAAAGTGGCTTATGTAATGGTGATGGCTAAAGCCTAAAGGGGATTCTTCTTTGAAGAATCATCTGATTTGGAGCTCCTAGTTAGACCTCTGTCTGTTTGTTGGTCATGATTCAGGCTAGGCGGCGCATGCGCTGCGCTGGCCTGTTGAA] consensusID : consensus_10621#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 491 fasta sequence [TCTTCATGGCCAAGAAAGGCAAGACCAACTCTACCAGAAGAGCCTCTGCTTCTTCTTCTTCTTCNTCTGCCGCAGCCGATGGCGATGGATCGCCATGGCTGCGGCTGACGGCCTTCGCCGTGCTCACCCTCCACTCGGCTTTCTCTGCATATCTGGCTAGAGATGACGCGAGGCTGGTCGCCCTCGTCGTCGTCGGCTACCTCCTGATGCTGGTGCTGCTGTTCTATGGCCTGGCCGTGCCTGTCCAACAGAAGAGAGACTAAGGTGAGGCTTCAGCAATCAGTCCTCAAGCATGAACCTGCCTTGTTTTTTTNTCCTTTTTGCTGGTTTGGTTTTCTTGCATGGTTTGATCTTGGTATTGAACTATGGATGTTATGTACAACCCTGTACATGCTGATCAAATGTGTATCTGTATGTTTAATTATTGATGTTACCAAAGAATCACATGTATAATATAAGTAATTCGAAAGAGCCACAAAAACAAAAAAACA] [+] EMBL AU031731 [TCTTCATGGCCAAGAAAGGCAAGACCAACTCTACCAGAAGAGCCTCTGCTTCTTCTTCTTCTTCNTCTGCCGCAGCCGATGGCGATGGATCGCCATGGCTGCGGCTGACGGCCTTCGCCGTGCTCACCCTCCACTCGGCTTTCTCTGCATATCTGGCTAGAGATGACGCGAGGCTGGTCGCCCTCGTCGTCGTCGGCTACCTCCTGATGCTGGTGCTGCTGTTCTATGGCCTGGCCGTGCCTGTCCAACAGAAGAGAGACTAAGGTGAGGCTTCAGCAATCAGTCCTCAAGCATGAACCTGCCTTGTTTTTTTNTCCTTTTTGCTGGTTTGGTTTTCTTGCATGGTTTGATCTTGGTATTGAACTATGGATGTTATGTACAACCCTGTACATGCTGATCAAATGTGTATCTGTATGTTTAATTATTGATGTTACCAAAGAATCACATGTATAATATAAGTAATTCGAAAGAGCCACAAAAACAAAAAAACA] [+] EMBL OSR10161B [TCTTCATGGCCAAGAAAGGCAAGAACAACTCTACCAGAAGAGCCTCTGCTTCTTCTTCTTCTTCCTCTNCCGCAGCCGATGGCGATGGATCGCCATGGCTGCGGCTGACGGCCTTCGCCGTGCTCACCCTCCACTCGGCTTTCTCTGCATATCTGGCTAGAGATGACGCGAGGCTGGTCGNCCTCGTCGTCGTCGGCTACCTCCTGATGCT ] consensusID : consensus_10621#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 173 fasta sequence [TTTTTTTTTTTTTTATACTGAACTCCATAGTGTGTAGCTCTTTCGAATTGCTTATATTATGCATGTGATTCTTGGATAACATCAGTAATTAAACATACAGATAGACATTTGATCAGCATGTACAAGGTTGTACATAACATCCATAGTTCAATATCCCCCTTGTCTCGTCCTCT] [+] EMBL CA760763 [TTTTTTTTTTTTTTATACTGAACTCCATAGTGTGTAGCTCTTTCGAATTGCTTATATTATGCATGTGATTCTTGGATAACATCAGTAATTAAACATACAGATAGACATTTGATCAGCATGTACAAGGTTGTACATAACATCCATAGTTCAATATCCCCCTTGTCTCGTCCTCT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_10621#2 ------------------------------------------------------------ consensus_10621#3 ------------------------------------------------------------ consensus_10621#0 -GATTTCCGCCTTCAGGGGTTTCTGAACGAGAGAGAGACAGACGGCGGCGGGCGGCGGCG 59 consensus_10621#1 TGATTTCCGCCTTCAGGGGTTTCTGAACGAGAGAGAGACAGACGGCGGCGGGCGGCGGCG 60 consensus_10621#2 ----------------------TCTTCATGGCCAAGAAAGGCAAGACCAACTCTACCAGA 38 consensus_10621#3 ------------------------------------------------------------ consensus_10621#0 GCGGCGGCGAGGGAGCCGAAGCCTGAGAGGATGGTGTTTGGCCGGAGCAAGTCGTCCTCG 119 consensus_10621#1 GCGGCGGCGAGGGAGCCGAAGCCTGAGAGGATGGTGTTTGGCCGGAGCAAGTCGTCCTCG 120 consensus_10621#2 AGAGCCTCTGCTTCTTCTTCTTCTTCNTCTGCCGCAGCCGATGGCGATGGATCGCCATGG 98 consensus_10621#3 ------------------------------------------------------------ consensus_10621#0 TCGACGGCGTCTCCTCCCCCTGCTGCGGCGGCTTCCTCGGCGGCCGCGGCGGCGTGCTCG 179 consensus_10621#1 TCGACGGCGTCTCCTCCCCCTGCTGCGGCGGCTTCCTCGGCGGCCGCGGCGGCGTGCTCG 180 consensus_10621#2 CTGCGGCTGACGGCCTTCGCCGTGCTCACCCTCCACTCG-GCTTTCTCTGCATATCTGGC 157 consensus_10621#3 ------------------------------------------------------------ consensus_10621#0 GAGCTGCGTGCGGCGTACCACGAGTGCTTCAACCGCTGGTACGCGGAGAAGTTCGCCAAG 239 consensus_10621#1 GAGCTGCGTGCGGCGTACCACGAGTGCTTCAACCGCTGGTACGCGGAGAAGTTCGCCAAG 240 consensus_10621#2 TAGAGATGACGCGAGGCTGGTCGCCCTCGTCGTCGTCGGCTACCTCCTGATGCTGGTGCT 217 consensus_10621#3 ------------------------------------------------------------ consensus_10621#0 GGGCAATGGCACAAGGACGACTGCGTCGGCGAGTGGCACAAGTACCGCGCCTGCCTCGAG 299 consensus_10621#1 GGGCAATGGCACAAGGACGACTGCGTCGGCGAGTGGCACAAGTACCGCGCCTGCCTCGAG 300 consensus_10621#2 GCTGTTCTATGGCCTGGCCGTGCCTGTCCAACAGAAGAGAGACTAAGGTGAGGCTTCAGC 277 consensus_10621#3 ------------------------------------------------------------ consensus_10621#0 GAACATCTGGAAGACAAGAATCTCAGGCAAATCCTATTGGAATCAGAAACATCTGCCTAC 359 consensus_10621#1 GTCACTCCC-----TTCTCGCCGCCTCCGAATTCGATCA----CAGCATCACTGATTTAT 351 consensus_10621#2 AATCAGTCCTCAAGCATGAACCTGCCTTGTTTTTTTNTC--CTTTTTGCTGGTTTGGTTT 335 consensus_10621#3 -----------------------------TTTTTTTTTT--TTTTATACTGAACT--CCA 27 consensus_10621#0 TATGCCCAGTTTGATGCTGATTCTTCTTCTCGAAAAGGTGGCACCTCGACGAAGTGACAA 419 consensus_10621#1 TA--------CCGATCCC--CTCAATTTGTTGCAAAGACGACTGCCCTAGGGATTG-CTC 400 * * * consensus_10621#2 TCTTGCATGGTTTGATCTTGGT---A-TTGAACTATGGATGTTATGTACAA-----CCCT 386 consensus_10621#3 TAGTGTGTAGCTCTTTCGAATT---GCTTATATTATGCATGTGATTCTTGG-----ATA- 78 consensus_10621#0 CCTAGGGCTAACCACATATGATCAAGTTTCGCTTGACTCAACCTGGATTAGGAGACCCTC 479 consensus_10621#1 TTGTGTTTTCGCAGTTTAGGATGGGGTTTCATTTAAGTAGGTTT---TTAG--------T 449 * * ** * consensus_10621#2 GTACAT----GCTGATCAAATGTGTATCT-GTATGTT---TAATTATTGATGTTACCAAA 438 consensus_10621#3 --ACATC---AGTAATTAAACATACAGAT-AGACATT---TGATCAGC-ATGT------A 122 consensus_10621#0 ATAGATGAACGAAAAAGGTGTTTGTATTTTACATATTAGATGCATGTTCATGCTGTTGCA 539 consensus_10621#1 TTATATGGCAAGAAATCGAGTTGTTTTCTAGTGTGTTGGTTGCTAGATCAAGTTGATAAA 509 * ** * * ** * * * * consensus_10621#2 GAATCACAT-GTATAATATAAGTAATTCGAAAGAGCCACAAAAACAAAAAAACA------ 491 consensus_10621#3 CAAGGTTGT-ACATAACATCCATAGTTCAATATCCCCCTTGTCTCGTCCTCT-------- 173 consensus_10621#0 TCGCGCTGCAGTTCAGCAGCTGAGATGTAAGCTTTTCCAAGATCATATTGAACTCAAACC 599 consensus_10621#1 GTGGCTTA---TGTAATGGTGATGGCTAAAGCCTAAAGGGGATTCTTCTTTGAAGAATCA 566 * * consensus_10621#2 ------------------------------------------------------------ consensus_10621#3 ------------------------------------------------------------ consensus_10621#0 TACAACTTTGATGTACCC-TGAAATTTGCAGCAGTTTCTCT-TCCTGAATCTGGGAGAAC 657 consensus_10621#1 TCTGATTTGGAGCTCCTAGTTAGACCTCTGTCTGTTTGTTGGTCATGATTCAGGCTAGGC 626 consensus_10621#2 ------------------------------------------------------------ consensus_10621#3 ------------------------------------------------------------ consensus_10621#0 AGCTTCAGCTATATGTAAACTTAAAAAATATTCTCCAACCCACCAATTTTGTGCTGCATC 717 consensus_10621#1 GGCGCATGCGCTGCGCTGGCCTGTTGAA-------------------------------- 654 consensus_10621#2 ------------------------------------------------------------ consensus_10621#3 ------------------------------------------------------------ consensus_10621#0 GATGCAAATTTTCAATACCTCCTATATGCCATCTTCCAAAGTCCTTTGAGCATAGTTCTG 777 consensus_10621#1 ------------------------------------------------------------ consensus_10621#2 ------------------------------------------------------------ consensus_10621#3 ------------------------------------------------------------ consensus_10621#0 GTAGCGTGACAGTGACTTGCAGTCTTGGAGGCTCTTGTGTTGTCCGAATCAGATGCCTTG 837 consensus_10621#1 ------------------------------------------------------------ consensus_10621#2 ------------------------------------------------------------ consensus_10621#3 ------------------------------------------------------------ consensus_10621#0 ACTTTGTTGTCTATTATGATGGATTCATTCAACAAAGCTTATTGTTTGTCACATAGGCCT 897 consensus_10621#1 ------------------------------------------------------------ consensus_10621#2 ------------------------------------------------------------ consensus_10621#3 ------------------------------------------------------------ consensus_10621#0 GATCCTCTCTGATGTGGTGGCAAACAAGCAGTGAAAGCTACCAGTCTACCACTCACTCAG 957 consensus_10621#1 ------------------------------------------------------------ consensus_10621#2 ------------------------------------------------------------ consensus_10621#3 ------------------------------------------------------------ consensus_10621#0 GGAAGCTTCGTAGCAAAGCAAAGCATCAGCCTTCACCTTGTCCAGAGCCCAGAGAAAAGG 1017 consensus_10621#1 ------------------------------------------------------------ consensus_10621#2 ----------------------------------------------------------- consensus_10621#3 ----------------------------------------------------------- consensus_10621#0 GATCCCCTTCAAGCTGCTGTTCTTCATGGCCAAGAAAGGCAAGAACAACTCTACCAGAA 1076 consensus_10621#1 ----------------------------------------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||