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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_10622#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 6 consensus length = 824 fasta sequence
[TCCGACTGGAGCACGAGGACACTGAATGGACTGAAGGAGTAGAAAAATTAGCGACCCTTCCTTTTTACCTCCAGCGAAGTCCTCTCCGGCGCTGGCTTTCTCCTCCACGGGTCTAGGGTTCCGGCCACCGCCGCCGCCGCCGCACGGGGGAGAGAGAGTGAGAGGATGAGCGGGAGCGCGTTCAACGCGTTCAAGTCGCGGGTGGCGGTGGCGTGGAGCCCCAAGCTGTACATCACGCT-GGTGCGGGGCCTCCCGGGGACGCGCCGCCTCCACCGCCGCACGCTCGAGGCCATGCGCCTCCGCCGCTGCCACCGCACCGTCGAGCACCGCACCACCCCTTCCCTCCTCGGCATGCTCACCCAGGTCAAGCGCCTCGTCGTCGTCGAGACCCAGGAGATGTACGCCGCGCGGAGGCAGGCCGAGGACGACCGCCGCGCGCCCAGGCCACCCCTCGTCGTCTCCCACCGCCCGCCCGCCGCTGCCACGCCCACGCCCACGCCCACTGCGGGCCACTAGACTCACCAGTGGGCACCAGAAGCCATTCTTCAATCAAGACTGGCTACTATATGCTTGAGACTATCTTTGCTCTCAATGATGATTTCATTGAACCTGTTCTGGTAACTCATTATTTACCAAAGTGGTCTCATCAAGCTTGTACCTTTGAAGACCGTAATGTCTTGGCCTTTGTAGTCAGTTAAATGAATAAAGCCTTTTTGATATGTTGGTGCCACT-GTCCAATCTT-GTCAGTTACTGCTTCCTCTATCATCGAAATTATTGCTGCAAAATTCACATTCCATTTATGGTTTATCACTTCATTTCAACTA]
[+] EMBL CF340039 [TCCGACTGGAGCACGAGGACACTGAATGGACTGAAGGAGTAGAAAAATTAGCGACCCTTCCTTTTTACCTCCAGCGAAGTCCTCTCCGGCGCTGGCTTTCTCCTCCACGGGTCTAGGGTTCCGGCCACCGCCGCCGCCGCCGCACGGGGGAGAGAGAGTGAGAGGATGAGCGGGAGCGCGTTCAACGCGTTCAAGTCGCGGGTGGCGGTGGCGTGGAGCCCCAAGCTGTACATCACGCT GGTGCGGGGCCTCCCGGGGACGCGCCGCCTCCACCGCCGCACGCTCGAGGCCATGCGCCTCCGCCGCTGCCACCGCACCGTCGAGCACCGCACCACCCCTTCCCTCCTCGGCATGCTCACCCAGGTCAAGCGCCTCGTCGTCGTCGAGACCCAGGAGATGTACGCCGCGCGGAGGCAGGCCGAGGACGACCGCCGCGCGCCCAGGCCACCCCTCGTCGTCTCCCACCGCCCGCCCGCCGCTGCCACGCCCACGCCCACGCCCA ]
[+] EMBL CF338622 [ GAATGGACTGAAGGAGTAGAAAAATTAGCGACCCTTCCTTTTTACCTCCAGCGAAGTCCTCTCCGGCGCTGGCTTTCTCCTCCACGGGTCTAGGGTTCCGGCCACCGCCGCCGCCGCCGCACGGGGGAGAGAGAGTGAGAGGATGAGCGGGAGCGCGTTCAACGCGTTCAAGTCGCGGGTGGCGGTGGCGTGGAGCCCCAAGCTGTACATCACGCT GGTGCGGGGCCTNCCGGGGACGCGCCGCCTCCACCGCCGCACGCTCGAGGCCATGCGCCTCCGCCGCTG ]
[+] EMBL CF340699 [ TGAAGGAGTAGAAAAATTAGCGACCCTTCCTTTTTACCTCCAGCGAAGTCCTCTCCGGCGCTGGCTTTCTCCTCCACGGGTCTAGGGTTCCGGCCACCGCCGCCGCCGCCGCACGGGGGAGAGAGAGTGAGAGGATGAGCGGGAGCGCGTTCAACGCGTTC AGTCGCGGGTGGCGGTGGCGTGGAGCCCCAAGCTGTACATCACGCTGGGTGCGGNGCCTCCCGGGGACGCGCCGCCTCCACCGCCGCACGCTCGAGGCCATGCGCCTCCGCCGCTGCCACCGCACCGTCGAGCACCGCACCACCCCTTCCCTCCTCGGCATGCTCACCCAGGTCAAGCGCCTCGTCGTCGTCGAGACCCAGGAGATGTACGCCGCGCGGAGGCAGGCCGAGGACGACCGCCGCGCGCCCAGGCCACCCCTCGTCGTCTCCCACCGCCCGCCCGCCGTTGCCACGCCCACGCCCACGCCCACTGCGGGCCACTAGACTCACCAGTGGGCACCAGAAGCCATTCTTCAATCAAGACTGGC ]
[+] EMBL CF340458 [ TGAAGGAGTAGAAAAATTAGCGACCCTTCCTTTTTACCTCCAGCGAAGTCCTCTCCGGCGCTGGCTTTCTCCTCCACGGGTCTAGGGTTCCGGCCACCGCCGCCGCCGCCGCACGGGGGAGAGAGAGTGAGAGGATGAGCGGGAGCGCGTTCAACGCGTTCAAGTCGCGGGTGGCGGTGGCGTGGAGCCCCAAGCTGTACATCA ]
[+] EMBL AK063315 [ CCTCCACGGGTCTAGGGTTCCGGCCACCGCCGCCGCCGCCGCACGGGGGAGAGAGAGTGAGAGGATGAGCGGGAGCGCGTTCAACGCGTTCAAGTCGCGGGTGGCGGTGGCGTGGAGCCCCAAGCTGTACATCACGCT GGTGCGGGGCCTCCCGGGGACGCGCCGCCTCCACCGCCGCACGCTCGAGGCCATGCGCCTCCGCCGCTGCCACCGCACCGTCGAGCACCGCACCACCCCTTCCCTCCTCGGCATGCTCACCCAGGTCAAGCGCCTCGTCGTCGTCGAGACCCAGGAGATGTACGCCGCGCGGAGGCAGGCCGAGGACGACCGCCGCGCGCCCAGGCCACCCCTCGTCGTCTCCCACCGCCCGCCCGCCGCTGCCACGCCCACGCCCACGCCCACTGCGGGCCACTAGACTCACCAGTGGGCACCAGAAGCCATTCTTCAATAAAGACTGGCTACTATATGCTTGAGACTATCTTTGCTCTCAATGATGATTTCATTGAACCTGTTCTGGTAACTCATTATTTACCAAAGTGGTCTCATCAAGCTTGTACCTTTGAAGACCGTAATGTCTTGGCCTTTGTAGTCAGTTAAATGAATAAAGCCTTTTTGATATGTTGGTGCCACT GTCCAATCTT GTCAGTTACTGCTTCCTCTATCATCGAAATTATTGCTGCAAAATTCACATTCCATTTATGGTTTATCACTTCATTTCAACTA]
[+] EMBL AU162251 [ AGGCAGGCCGAGGACGACCGCCGCGCGCCCAGGCCACCCCTCGTCGTCTCCCACCGCCCGCCCGCCGCTGCCACGCCCACGCCCACGCCCACTGCGGGCCACTAGACTCACCAGTGGGCACCAGAAGCCATTCTTCAATCAAGACTGGCTACTATATGCTTGAGACTATCTTTGCTCTCAATGATGATTTCATTGAACCTGTTCTGGTAACTCATTATTTACCAAAGTGGTCTCATCAAGCTTGTACCTTTGAAGACCGTAATGTCTTGGCCTTTGTAGTCAGTTAAATGAATAAAGCCTTTTTGATATGTTGGTGCCACTGGTCCAATCTTGGTCAGTTACTGCTTCCTCTATCATCGAAATTATTGCTGCAAAATTCACATTCC ]
consensusID : consensus_10622#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 293 fasta sequence
[GCGGGAGCGCGTTCAAGGCGTTCAAGTCGCGGGTGGAGGTGGCGTGGAGCCCCAAGCTGGTGCGGGGCCTCCCAGGTACGCGCCGCCTCCACCGCCACACGCTTGAGGCCATGAGCCTCCGCCGCTGCCACCGCACCGTCGAGCACCGCACCACGCCCTCCCTGCTCGGCATGCTCACCCAGGTCAAGTGCCTCGTCGTCGTCGAGACCCAGGAGATGTACGCCGCGCGGAGGCAGGCCGAGGAGGACCGACGCGCCCCCAGGCCCCCGCTCATCGTCTCCCACACCCGCCGC]
[+] EMBL CA756244 [GCGGGAGCGCGTTCAAGGCGTTCAAGTCGCGGGTGGAGGTGGCGTGGAGCCCCAAGCTGGTGCGGGGCCTCCCAGGTACGCGCCGCCTCCACCGCCACACGCTTGAGGCCATGAGCCTCCGCCGCTGCCACCGCACCGTCGAGCACCGCACCACGCCCTCCCTGCTCGGCATGCTCACCCAGGTCAAGTGCCTCGTCGTCGTCGAGACCCAGGAGATGTACGCCGCGCGGAGGCAGGCCGAGGAGGACCGACGCGCCCCCAGGCCCCCGCTCATCGTCTCCCACACCCGCCGC]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_10622#0 TCCGACTGGAGCACGAGGACACTGAATGGACTGAAGGAGTAGAAAAATTAGCGACCCTTC 60
consensus_10622#1 ------------------------------------------------------------
consensus_10622#0 CTTTTTACCTCCAGCGAAGTCCTCTCCGGCGCTGGCTTTCTCCTCCACGGGTCTAGGGTT 120
consensus_10622#1 ------------------------------------------------------------
consensus_10622#0 CCGGCCACCGCCGCCGCCGCCGCACGGGGGAGAGAGAGTGAGAGGATGAGCGGGAGCGCG 180
consensus_10622#1 -------------------------------------------------GCGGGAGCGCG 11
***********
consensus_10622#0 TTCAACGCGTTCAAGTCGCGGGTGGCGGTGGCGTGGAGCCCCAAGCTGTACATCACGCTG 240
consensus_10622#1 TTCAAGGCGTTCAAGTCGCGGGTGGAGGTGGCGTGGAGCCCCAAGCTG------------ 59
***** ******************* **********************
consensus_10622#0 GTGCGGGGCCTCCCGGGGACGCGCCGCCTCCACCGCCGCACGCTCGAGGCCATGCGCCTC 300
consensus_10622#1 GTGCGGGGCCTCCCAGGTACGCGCCGCCTCCACCGCCACACGCTTGAGGCCATGAGCCTC 119
************** ** ******************* ****** ********* *****
consensus_10622#0 CGCCGCTGCCACCGCACCGTCGAGCACCGCACCACCCCTTCCCTCCTCGGCATGCTCACC 360
consensus_10622#1 CGCCGCTGCCACCGCACCGTCGAGCACCGCACCACGCCCTCCCTGCTCGGCATGCTCACC 179
*********************************** ** ***** ***************
consensus_10622#0 CAGGTCAAGCGCCTCGTCGTCGTCGAGACCCAGGAGATGTACGCCGCGCGGAGGCAGGCC 420
consensus_10622#1 CAGGTCAAGTGCCTCGTCGTCGTCGAGACCCAGGAGATGTACGCCGCGCGGAGGCAGGCC 239
********* **************************************************
consensus_10622#0 GAGGACGACCGCCGCGCGCCCAGGCCACCCCTCGTCGTCTCCCACCGCCCGCCCGCCGCT 480
consensus_10622#1 GAGGAGGACCGACGCGCCCCCAGGCCCCCGCTCATCGTCTCCCA-----CACCCGCCGC- 293
***** ***** ***** ******** ** *** ********** * ********
consensus_10622#0 GCCACGCCCACGCCCACGCCCACTGCGGGCCACTAGACTCACCAGTGGGCACCAGAAGCC 540
consensus_10622#1 ------------------------------------------------------------
consensus_10622#0 ATTCTTCAATCAAGACTGGCTACTATATGCTTGAGACTATCTTTGCTCTCAATGATGATT 600
consensus_10622#1 ------------------------------------------------------------
consensus_10622#0 TCATTGAACCTGTTCTGGTAACTCATTATTTACCAAAGTGGTCTCATCAAGCTTGTACCT 660
consensus_10622#1 ------------------------------------------------------------
consensus_10622#0 TTGAAGACCGTAATGTCTTGGCCTTTGTAGTCAGTTAAATGAATAAAGCCTTTTTGATAT 720
consensus_10622#1 ------------------------------------------------------------
consensus_10622#0 GTTGGTGCCACTGTCCAATCTTGTCAGTTACTGCTTCCTCTATCATCGAAATTATTGCTG 780
consensus_10622#1 ------------------------------------------------------------
consensus_10622#0 CAAAATTCACATTCCATTTATGGTTTATCACTTCATTTCAACTA 824
consensus_10622#1 --------------------------------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||